Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35889 * 119.46732 * 2 1 4 4 C 1.35027 * 120.88472 * 180.02562 * 3 2 1 5 5 C 1.40920 * 119.80984 * 359.97438 * 4 3 2 6 6 O 1.35447 * 120.51467 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00089 * 185.47443 * 6 5 4 8 8 H 1.08998 * 109.47348 * 36.36881 * 7 6 5 9 9 C 1.50707 * 109.46720 * 276.37378 * 7 6 5 10 10 H 1.07997 * 119.99931 * 124.68510 * 9 7 6 11 11 C 1.37875 * 120.00110 * 304.68378 * 9 7 6 12 12 N 1.31524 * 119.99907 * 2.39110 * 11 9 7 13 13 Si 1.86796 * 120.00105 * 182.39034 * 11 9 7 14 14 H 1.48504 * 109.46989 * 59.99783 * 13 11 9 15 15 H 1.48499 * 109.47157 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47157 * 300.00014 * 13 11 9 17 17 C 1.53003 * 109.47089 * 156.37667 * 7 6 5 18 18 N 1.46902 * 109.46935 * 293.79550 * 17 7 6 19 19 C 1.46904 * 109.47122 * 63.40520 * 18 17 7 20 20 C 1.46900 * 109.46837 * 183.40506 * 18 17 7 21 21 C 1.46902 * 109.47005 * 303.40524 * 18 17 7 22 22 C 1.38255 * 118.97210 * 0.27796 * 5 4 3 23 23 C 1.34598 * 119.47093 * 180.02562 * 2 1 3 24 24 O 1.22119 * 119.92410 * 359.95868 * 23 2 1 25 25 H 1.09006 * 109.47078 * 90.00099 * 1 2 3 26 26 H 1.09007 * 109.46666 * 209.99673 * 1 2 3 27 27 H 1.08992 * 109.47027 * 329.99527 * 1 2 3 28 28 H 1.08008 * 119.56018 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.09686 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99871 * 4.28299 * 12 11 9 31 31 H 1.08996 * 109.47384 * 53.79677 * 17 7 6 32 32 H 1.08995 * 109.46669 * 173.79981 * 17 7 6 33 33 H 1.08998 * 109.46729 * 50.26111 * 19 18 17 34 34 H 1.08998 * 109.47220 * 170.25955 * 19 18 17 35 35 H 1.08998 * 109.47027 * 290.26386 * 19 18 17 36 36 H 1.09002 * 109.47085 * 60.00143 * 20 18 17 37 37 H 1.09003 * 109.46528 * 180.02562 * 20 18 17 38 38 H 1.08999 * 109.47315 * 300.00231 * 20 18 17 39 39 H 1.09007 * 109.47160 * 60.00464 * 21 18 17 40 40 H 1.09003 * 109.46549 * 179.97438 * 21 18 17 41 41 H 1.08993 * 109.47387 * 300.00253 * 21 18 17 42 42 H 1.08005 * 120.43464 * 179.70493 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1335 1.1831 0.0000 4 6 3.4833 1.2165 -0.0005 5 6 4.2139 0.0115 -0.0005 6 8 5.5683 0.0283 -0.0005 7 6 6.2327 -1.2309 -0.1220 8 1 5.6684 -1.8761 -0.7953 9 6 6.3283 -1.8813 1.2342 10 1 5.9363 -2.8763 1.3847 11 6 6.9161 -1.2060 2.2827 12 7 7.3511 0.0234 2.1118 13 14 7.0947 -2.0371 3.9460 14 1 7.9204 -3.2629 3.8007 15 1 7.7546 -1.1061 4.8963 16 1 5.7518 -2.4034 4.4631 17 6 7.6393 -1.0133 -0.6835 18 7 7.5444 -0.5176 -2.0631 19 6 6.8813 0.7932 -2.0679 20 6 8.8933 -0.3862 -2.6299 21 6 6.7638 -1.4642 -2.8710 22 6 3.5268 -1.1883 -0.0059 23 6 2.1272 -1.1718 -0.0005 24 8 1.5054 -2.2229 -0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.5776 2.1092 0.0004 29 1 4.0016 2.1640 -0.0009 30 1 7.2030 0.4772 1.2674 31 1 8.1663 -0.2825 -0.0702 32 1 8.1845 -1.9570 -0.6732 33 1 7.3589 1.4446 -1.3361 34 1 6.9639 1.2386 -3.0594 35 1 5.8291 0.6691 -1.8119 36 1 9.3853 -1.3588 -2.6263 37 1 8.8229 -0.0179 -3.6535 38 1 9.4725 0.3162 -2.0305 39 1 5.7629 -1.5617 -2.4503 40 1 6.6931 -1.0961 -3.8945 41 1 7.2558 -2.4368 -2.8674 42 1 4.0630 -2.1258 -0.0108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229675791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = 73.589904 kcal Electronic energy + Delta-G solvation = -23930.021541 eV Core-core repulsion = 20609.201168 eV Total energy + Delta-G solvation = -3320.820373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.65411 -42.01179 -39.81617 -37.44325 -35.40775 -33.91272 -31.69051 -30.73565 -30.54833 -30.38181 -28.09611 -27.76278 -25.28950 -24.78201 -23.34047 -22.49005 -19.75039 -19.26722 -18.88987 -18.60430 -18.20792 -17.95861 -17.69866 -16.82966 -16.38088 -15.84441 -15.36355 -15.17675 -15.06515 -14.84832 -14.78733 -14.37473 -14.30956 -14.22469 -13.98550 -13.94683 -13.90398 -13.74728 -13.48605 -13.34716 -12.91115 -12.66037 -12.16323 -12.01511 -11.71078 -11.27301 -10.69669 -10.59103 -10.12468 -9.66313 -8.73992 -8.05500 -6.06165 0.06771 0.12644 1.14304 1.89165 1.95898 2.07372 2.11349 2.24176 2.36614 2.40865 2.51533 2.93481 2.98545 3.02181 3.10910 3.23421 3.32393 3.43856 3.45318 3.58283 3.60056 3.64485 3.65913 3.84373 3.88511 3.91032 3.98693 4.12545 4.31975 4.34506 4.39340 4.58143 4.69442 4.74370 4.79313 5.21263 5.43882 5.69030 5.84088 6.34233 6.43650 6.70675 7.08135 7.39769 7.73071 9.26750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.511 5.511 3 C 0.153 3.847 4 C -0.241 4.241 5 C 0.235 3.765 6 O -0.319 6.319 7 C 0.171 3.829 8 H 0.063 0.937 9 C -0.630 4.630 10 H 0.077 0.923 11 C 0.053 3.947 12 N -0.864 5.864 13 Si 1.059 2.941 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.278 1.278 17 C -0.004 4.004 18 N -0.273 5.273 19 C -0.045 4.045 20 C -0.043 4.043 21 C -0.047 4.047 22 C -0.345 4.345 23 C 0.527 3.473 24 O -0.561 6.561 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.149 0.851 30 H 0.276 0.724 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 5.911 -16.697 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.224 5.224 3 C 0.025 3.975 4 C -0.265 4.265 5 C 0.184 3.816 6 O -0.231 6.231 7 C 0.118 3.882 8 H 0.080 0.920 9 C -0.666 4.666 10 H 0.095 0.905 11 C -0.159 4.159 12 N -0.498 5.498 13 Si 0.883 3.117 14 H -0.204 1.204 15 H -0.198 1.198 16 H -0.203 1.203 17 C -0.123 4.123 18 N 0.068 4.932 19 C -0.186 4.186 20 C -0.184 4.184 21 C -0.189 4.189 22 C -0.368 4.368 23 C 0.332 3.668 24 O -0.445 6.445 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.184 0.816 29 H 0.167 0.833 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.440 5.597 -15.184 16.781 hybrid contribution -0.593 -0.242 -1.287 1.437 sum 3.847 5.355 -16.471 17.742 Atomic orbital electron populations 1.22126 0.77435 1.05027 1.03654 1.45520 1.09220 1.06831 1.60843 1.21690 0.92985 0.89674 0.93109 1.20108 0.91993 0.97850 1.16541 1.19330 0.83065 0.93087 0.86165 1.85998 1.15580 1.36993 1.84499 1.20689 0.86162 0.81629 0.99764 0.91980 1.22142 1.46371 1.05198 0.92922 0.90533 1.26049 0.90771 0.95138 1.03976 1.71026 1.39661 1.11045 1.28062 0.83596 0.77950 0.75771 0.74344 1.20427 1.19849 1.20303 1.25007 1.05048 1.05588 0.76676 1.46418 1.14404 1.15450 1.16922 1.24344 1.04345 0.82865 1.07010 1.24060 0.82524 1.08488 1.03354 1.24110 1.00894 0.95688 0.98197 1.22214 0.92715 0.99247 1.22583 1.16705 0.88764 0.82477 0.78875 1.90958 1.69569 1.29807 1.54156 0.90814 0.88795 0.89806 0.81581 0.83310 0.91028 0.84540 0.84811 0.86222 0.87648 0.85199 0.86592 0.86889 0.86442 0.86250 0.86797 0.86343 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.02 10.35 59.85 0.62 0.60 16 2 N -0.51 -1.10 2.99 -127.44 -0.38 -1.48 16 3 C 0.15 -0.14 10.26 -16.90 -0.17 -0.31 16 4 C -0.24 0.04 9.98 -39.71 -0.40 -0.36 16 5 C 0.24 0.53 6.13 -38.56 -0.24 0.29 16 6 O -0.32 -0.33 4.84 -18.03 -0.09 -0.42 16 7 C 0.17 0.10 1.36 -27.88 -0.04 0.06 16 8 H 0.06 -0.05 4.16 -51.93 -0.22 -0.27 16 9 C -0.63 -4.57 7.88 -34.44 -0.27 -4.84 16 10 H 0.08 0.70 7.81 -52.49 -0.41 0.29 16 11 C 0.05 0.50 5.25 -17.82 -0.09 0.41 16 12 N -0.86 -8.54 12.89 55.43 0.71 -7.83 16 13 Si 1.06 9.76 29.90 -169.99 -5.08 4.68 16 14 H -0.28 -2.39 7.11 56.52 0.40 -1.98 16 15 H -0.27 -2.85 7.11 56.52 0.40 -2.45 16 16 H -0.28 -2.82 7.11 56.52 0.40 -2.42 16 17 C 0.00 0.02 3.50 -3.82 -0.01 0.01 16 18 N -0.27 2.92 0.05 -395.62 -0.02 2.90 16 19 C -0.04 0.45 7.10 60.07 0.43 0.88 16 20 C -0.04 0.57 8.00 60.06 0.48 1.05 16 21 C -0.05 0.54 7.57 60.07 0.45 1.00 16 22 C -0.34 -1.70 8.66 -38.93 -0.34 -2.04 16 23 C 0.53 3.30 7.39 -15.69 -0.12 3.19 16 24 O -0.56 -5.74 16.62 4.81 0.08 -5.66 16 25 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.09 0.18 7.37 -51.93 -0.38 -0.21 16 27 H 0.08 -0.27 8.00 -51.93 -0.42 -0.69 16 28 H 0.17 -0.84 8.03 -52.48 -0.42 -1.26 16 29 H 0.15 -0.36 8.06 -52.49 -0.42 -0.78 16 30 H 0.28 1.96 4.71 -40.82 -0.19 1.76 16 31 H 0.14 -0.32 5.89 -51.93 -0.31 -0.63 16 32 H 0.13 -0.75 8.11 -51.93 -0.42 -1.17 16 33 H 0.12 -1.07 7.95 -51.93 -0.41 -1.49 16 34 H 0.10 -1.38 8.00 -51.93 -0.42 -1.79 16 35 H 0.13 -1.02 5.20 -51.93 -0.27 -1.29 16 36 H 0.12 -1.60 8.13 -51.93 -0.42 -2.02 16 37 H 0.11 -1.71 8.07 -51.93 -0.42 -2.13 16 38 H 0.12 -1.50 8.14 -51.93 -0.42 -1.93 16 39 H 0.12 -1.09 5.88 -51.93 -0.31 -1.39 16 40 H 0.11 -1.58 8.14 -51.93 -0.42 -2.01 16 41 H 0.12 -1.45 8.14 -51.93 -0.42 -1.88 16 42 H 0.15 0.93 5.75 -52.48 -0.30 0.63 16 LS Contribution 325.71 15.07 4.91 4.91 Total: 0.00 -22.82 325.71 -5.78 -28.61 By element: Atomic # 1 Polarization: -19.42 SS G_CDS: -6.22 Total: -25.64 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 0.31 Total: -0.07 kcal Atomic # 7 Polarization: -6.72 SS G_CDS: 0.31 Total: -6.40 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.01 Total: -6.08 kcal Atomic # 14 Polarization: 9.76 SS G_CDS: -5.08 Total: 4.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -22.82 -5.78 -28.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229675791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.198 kcal (2) G-P(sol) polarization free energy of solvation -22.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds