Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35889 * 119.46732 * 2 1 4 4 C 1.35027 * 120.88472 * 180.02562 * 3 2 1 5 5 C 1.40920 * 119.80984 * 359.97438 * 4 3 2 6 6 O 1.35447 * 120.51467 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00089 * 185.47443 * 6 5 4 8 8 H 1.08998 * 109.47348 * 36.36881 * 7 6 5 9 9 C 1.50707 * 109.46720 * 276.37378 * 7 6 5 10 10 H 1.07997 * 119.99931 * 124.68510 * 9 7 6 11 11 C 1.37875 * 120.00110 * 304.68378 * 9 7 6 12 12 N 1.31524 * 119.99907 * 2.39110 * 11 9 7 13 13 Si 1.86796 * 120.00105 * 182.39034 * 11 9 7 14 14 H 1.48504 * 109.46989 * 59.99783 * 13 11 9 15 15 H 1.48499 * 109.47157 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47157 * 300.00014 * 13 11 9 17 17 C 1.53003 * 109.47089 * 156.37667 * 7 6 5 18 18 N 1.46902 * 109.46935 * 293.79550 * 17 7 6 19 19 C 1.46904 * 109.47122 * 63.40520 * 18 17 7 20 20 C 1.46900 * 109.46837 * 183.40506 * 18 17 7 21 21 C 1.46902 * 109.47005 * 303.40524 * 18 17 7 22 22 C 1.38255 * 118.97210 * 0.27796 * 5 4 3 23 23 C 1.34598 * 119.47093 * 180.02562 * 2 1 3 24 24 O 1.22119 * 119.92410 * 359.95868 * 23 2 1 25 25 H 1.09006 * 109.47078 * 90.00099 * 1 2 3 26 26 H 1.09007 * 109.46666 * 209.99673 * 1 2 3 27 27 H 1.08992 * 109.47027 * 329.99527 * 1 2 3 28 28 H 1.08008 * 119.56018 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.09686 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99871 * 4.28299 * 12 11 9 31 31 H 1.08996 * 109.47384 * 53.79677 * 17 7 6 32 32 H 1.08995 * 109.46669 * 173.79981 * 17 7 6 33 33 H 1.08998 * 109.46729 * 50.26111 * 19 18 17 34 34 H 1.08998 * 109.47220 * 170.25955 * 19 18 17 35 35 H 1.08998 * 109.47027 * 290.26386 * 19 18 17 36 36 H 1.09002 * 109.47085 * 60.00143 * 20 18 17 37 37 H 1.09003 * 109.46528 * 180.02562 * 20 18 17 38 38 H 1.08999 * 109.47315 * 300.00231 * 20 18 17 39 39 H 1.09007 * 109.47160 * 60.00464 * 21 18 17 40 40 H 1.09003 * 109.46549 * 179.97438 * 21 18 17 41 41 H 1.08993 * 109.47387 * 300.00253 * 21 18 17 42 42 H 1.08005 * 120.43464 * 179.70493 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1335 1.1831 0.0000 4 6 3.4833 1.2165 -0.0005 5 6 4.2139 0.0115 -0.0005 6 8 5.5683 0.0283 -0.0005 7 6 6.2327 -1.2309 -0.1220 8 1 5.6684 -1.8761 -0.7953 9 6 6.3283 -1.8813 1.2342 10 1 5.9363 -2.8763 1.3847 11 6 6.9161 -1.2060 2.2827 12 7 7.3511 0.0234 2.1118 13 14 7.0947 -2.0371 3.9460 14 1 7.9204 -3.2629 3.8007 15 1 7.7546 -1.1061 4.8963 16 1 5.7518 -2.4034 4.4631 17 6 7.6393 -1.0133 -0.6835 18 7 7.5444 -0.5176 -2.0631 19 6 6.8813 0.7932 -2.0679 20 6 8.8933 -0.3862 -2.6299 21 6 6.7638 -1.4642 -2.8710 22 6 3.5268 -1.1883 -0.0059 23 6 2.1272 -1.1718 -0.0005 24 8 1.5054 -2.2229 -0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.5776 2.1092 0.0004 29 1 4.0016 2.1640 -0.0009 30 1 7.2030 0.4772 1.2674 31 1 8.1663 -0.2825 -0.0702 32 1 8.1845 -1.9570 -0.6732 33 1 7.3589 1.4446 -1.3361 34 1 6.9639 1.2386 -3.0594 35 1 5.8291 0.6691 -1.8119 36 1 9.3853 -1.3588 -2.6263 37 1 8.8229 -0.0179 -3.6535 38 1 9.4725 0.3162 -2.0305 39 1 5.7629 -1.5617 -2.4503 40 1 6.6931 -1.0961 -3.8945 41 1 7.2558 -2.4368 -2.8674 42 1 4.0630 -2.1258 -0.0108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229675791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = 62.981082 kcal Electronic energy + Delta-G solvation = -23930.481574 eV Core-core repulsion = 20609.201168 eV Total energy + Delta-G solvation = -3321.280406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.07866 -42.17151 -39.92219 -37.79662 -35.76291 -34.14676 -31.66588 -30.85916 -29.68854 -29.56372 -28.11251 -27.82628 -25.40160 -24.53322 -23.43395 -22.48948 -20.00973 -19.33256 -18.65828 -18.07003 -17.90817 -17.79862 -17.41616 -17.03716 -16.63209 -15.97725 -15.67526 -15.26913 -15.01533 -14.51742 -14.38807 -14.17664 -14.05050 -13.95547 -13.57619 -13.45914 -13.36982 -13.34220 -13.22941 -13.10527 -12.91056 -12.88234 -12.68581 -12.29764 -12.12490 -11.79528 -11.16169 -11.06061 -10.82911 -9.87237 -9.03053 -8.70694 -6.67111 -0.01200 0.83256 0.91755 1.45208 1.56974 1.68338 1.77103 2.06055 2.35938 2.66896 2.69489 2.91923 2.97858 3.13728 3.65745 3.79516 3.84716 3.91082 4.04278 4.11710 4.15718 4.21624 4.25411 4.26679 4.37171 4.42992 4.46809 4.48426 4.53280 4.63016 4.68390 4.74108 4.77952 4.79418 4.85130 5.08533 5.29015 5.47923 5.54323 5.94459 6.12892 6.29926 6.52210 7.04590 7.10679 8.67561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.511 5.511 3 C 0.170 3.830 4 C -0.250 4.250 5 C 0.250 3.750 6 O -0.305 6.305 7 C 0.170 3.830 8 H 0.073 0.927 9 C -0.638 4.638 10 H 0.043 0.957 11 C 0.032 3.968 12 N -0.895 5.895 13 Si 1.070 2.930 14 H -0.270 1.270 15 H -0.289 1.289 16 H -0.299 1.299 17 C 0.018 3.982 18 N -0.259 5.259 19 C -0.048 4.048 20 C -0.045 4.045 21 C -0.052 4.052 22 C -0.384 4.384 23 C 0.511 3.489 24 O -0.623 6.623 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.223 0.777 29 H 0.181 0.819 30 H 0.289 0.711 31 H 0.119 0.881 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.151 0.849 41 H 0.128 0.872 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 8.824 -19.576 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.221 5.221 3 C 0.043 3.957 4 C -0.273 4.273 5 C 0.197 3.803 6 O -0.216 6.216 7 C 0.116 3.884 8 H 0.091 0.909 9 C -0.676 4.676 10 H 0.061 0.939 11 C -0.178 4.178 12 N -0.532 5.532 13 Si 0.898 3.102 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.226 1.226 17 C -0.104 4.104 18 N 0.084 4.916 19 C -0.189 4.189 20 C -0.185 4.185 21 C -0.193 4.193 22 C -0.407 4.407 23 C 0.318 3.682 24 O -0.513 6.513 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.239 0.761 29 H 0.198 0.802 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.128 0.872 34 H 0.166 0.834 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.164 0.836 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.142 8.540 -18.073 20.639 hybrid contribution -0.858 -1.089 -0.463 1.462 sum 4.284 7.451 -18.535 20.431 Atomic orbital electron populations 1.22346 0.75850 1.05538 1.04882 1.45555 1.10414 1.06684 1.59486 1.22594 0.93137 0.90037 0.89908 1.20531 0.92469 0.97783 1.16517 1.19674 0.83507 0.93276 0.83885 1.86032 1.15095 1.36430 1.84003 1.20672 0.89017 0.81618 0.97112 0.90920 1.22258 1.45025 1.04028 0.96280 0.93857 1.25989 0.91893 0.95676 1.04202 1.70966 1.41557 1.11244 1.29419 0.83423 0.76545 0.75777 0.74459 1.19493 1.21436 1.22586 1.24161 1.00128 1.06088 0.79997 1.46013 1.16394 1.15410 1.13821 1.24389 1.02571 0.82705 1.09253 1.24292 0.80238 1.09276 1.04681 1.24273 0.99203 0.96398 0.99440 1.21946 0.92677 0.99471 1.26567 1.16894 0.89190 0.83065 0.79026 1.90899 1.70626 1.32083 1.57678 0.89283 0.91776 0.85725 0.76075 0.80164 0.89689 0.86313 0.83773 0.87236 0.83429 0.87618 0.85727 0.83586 0.86682 0.89112 0.83107 0.85331 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.05 10.35 127.77 1.32 1.27 16 2 N -0.51 -2.24 2.99 -675.26 -2.02 -4.26 16 3 C 0.17 -0.72 10.26 83.33 0.85 0.14 16 4 C -0.25 0.47 9.98 22.19 0.22 0.69 16 5 C 0.25 1.37 6.13 22.93 0.14 1.51 16 6 O -0.30 -0.91 4.84 -87.44 -0.42 -1.34 16 7 C 0.17 0.51 1.36 29.85 0.04 0.55 16 8 H 0.07 0.07 4.16 -2.39 -0.01 0.06 16 9 C -0.64 -11.32 7.88 25.60 0.20 -11.12 16 10 H 0.04 1.01 7.81 -2.91 -0.02 0.98 16 11 C 0.03 0.69 5.25 84.65 0.44 1.13 16 12 N -0.90 -19.21 12.89 21.45 0.28 -18.93 16 13 Si 1.07 23.00 29.90 68.60 2.05 25.05 16 14 H -0.27 -5.22 7.11 99.48 0.71 -4.52 16 15 H -0.29 -6.82 7.11 99.48 0.71 -6.11 16 16 H -0.30 -7.28 7.11 99.48 0.71 -6.57 16 17 C 0.02 -0.16 3.50 86.30 0.30 0.14 16 18 N -0.26 5.92 0.05 ******* -0.07 5.85 16 19 C -0.05 1.07 7.10 127.69 0.91 1.97 16 20 C -0.04 1.32 8.00 127.69 1.02 2.34 16 21 C -0.05 1.27 7.57 127.69 0.97 2.24 16 22 C -0.38 -5.03 8.66 22.69 0.20 -4.84 16 23 C 0.51 7.91 7.39 84.69 0.63 8.54 16 24 O -0.62 -15.62 16.62 -5.70 -0.09 -15.71 16 25 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 26 H 0.06 0.37 7.37 -2.38 -0.02 0.35 16 27 H 0.12 -1.16 8.00 -2.39 -0.02 -1.18 16 28 H 0.22 -3.41 8.03 -2.91 -0.02 -3.44 16 29 H 0.18 -1.46 8.06 -2.91 -0.02 -1.48 16 30 H 0.29 4.40 4.71 -92.71 -0.44 3.96 16 31 H 0.12 -0.51 5.89 -2.39 -0.01 -0.53 16 32 H 0.14 -1.60 8.11 -2.39 -0.02 -1.62 16 33 H 0.11 -2.11 7.95 -2.39 -0.02 -2.13 16 34 H 0.15 -4.45 8.00 -2.39 -0.02 -4.47 16 35 H 0.11 -1.75 5.20 -2.39 -0.01 -1.76 16 36 H 0.12 -3.77 8.13 -2.39 -0.02 -3.79 16 37 H 0.15 -5.10 8.07 -2.39 -0.02 -5.12 16 38 H 0.11 -3.20 8.14 -2.39 -0.02 -3.22 16 39 H 0.09 -1.60 5.88 -2.38 -0.01 -1.61 16 40 H 0.15 -4.71 8.14 -2.39 -0.02 -4.73 16 41 H 0.13 -3.34 8.14 -2.39 -0.02 -3.36 16 42 H 0.13 2.22 5.75 -2.91 -0.02 2.20 16 Total: 0.00 -61.52 325.71 8.31 -53.22 By element: Atomic # 1 Polarization: -49.78 SS G_CDS: 1.34 Total: -48.44 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 7.24 Total: 4.57 kcal Atomic # 7 Polarization: -15.53 SS G_CDS: -1.81 Total: -17.34 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.52 Total: -17.05 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: 2.05 Total: 25.05 kcal Total: -61.52 8.31 -53.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229675791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.196 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds