Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46805 * 2 1 4 4 C 1.53002 * 109.46805 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47021 * 181.35177 * 4 3 2 6 6 C 1.46903 * 111.00018 * 61.35995 * 5 4 3 7 7 C 1.50699 * 109.47254 * 66.03885 * 6 5 4 8 8 H 1.07998 * 119.99881 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00207 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00153 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99638 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46851 * 90.00332 * 11 9 7 13 13 H 1.48504 * 109.47011 * 209.99910 * 11 9 7 14 14 H 1.48496 * 109.47256 * 329.99930 * 11 9 7 15 15 C 1.46896 * 111.00526 * 297.40420 * 5 4 3 16 16 C 1.50707 * 109.47104 * 288.29048 * 15 5 4 17 17 C 1.33387 * 125.20225 * 95.58179 * 16 15 5 18 18 C 1.38428 * 114.91808 * 179.86186 * 17 16 15 19 19 C 1.33384 * 114.92213 * 0.43144 * 18 17 16 20 20 C 1.50699 * 125.20611 * 179.79770 * 19 18 17 21 21 C 1.52994 * 109.47493 * 89.99429 * 20 19 18 22 22 S 1.75884 * 125.20171 * 275.88775 * 16 15 5 23 23 H 1.09000 * 109.47174 * 59.99956 * 1 2 3 24 24 H 1.09002 * 109.46696 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47075 * 299.99591 * 1 2 3 26 26 H 1.09002 * 109.46772 * 239.99975 * 2 1 3 27 27 H 1.09000 * 109.47174 * 120.00044 * 2 1 3 28 28 H 1.08999 * 109.46970 * 60.00345 * 3 2 1 29 29 H 1.08997 * 109.46791 * 300.00045 * 3 2 1 30 30 H 1.09006 * 109.47099 * 61.35723 * 4 3 2 31 31 H 1.09000 * 109.47278 * 301.35594 * 4 3 2 32 32 H 1.08991 * 109.47679 * 186.04480 * 6 5 4 33 33 H 1.09011 * 109.46739 * 306.04482 * 6 5 4 34 34 H 0.97009 * 120.00343 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47022 * 48.28658 * 15 5 4 36 36 H 1.08998 * 109.47577 * 168.28896 * 15 5 4 37 37 H 1.08002 * 122.54034 * 0.02562 * 17 16 15 38 38 H 1.07998 * 122.53597 * 180.20050 * 18 17 16 39 39 H 1.09003 * 109.47183 * 210.00456 * 20 19 18 40 40 H 1.09004 * 109.46688 * 329.99153 * 20 19 18 41 41 H 1.09001 * 109.47060 * 300.00410 * 21 20 19 42 42 H 1.09003 * 109.46960 * 60.00477 * 21 20 19 43 43 H 1.08996 * 109.47004 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8271 0.0333 6 6 3.6148 3.5142 1.2532 7 6 4.2637 2.8758 2.4543 8 1 4.9393 2.0434 2.3243 9 6 3.9949 3.3546 3.7190 10 7 4.5615 2.7979 4.7670 11 14 2.8257 4.7941 3.9437 12 1 1.4408 4.2853 4.1118 13 1 3.2187 5.5674 5.1491 14 1 2.8884 5.6739 2.7491 15 6 3.6405 3.5623 -1.1674 16 6 4.4186 3.0646 -2.3583 17 6 3.9986 2.1344 -3.2171 18 6 4.8858 1.8401 -4.2381 19 6 6.0300 2.5248 -4.2032 20 6 7.1565 2.3854 -5.1945 21 6 6.9459 3.3686 -6.3476 22 16 6.0226 3.6161 -2.8238 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9498 -0.9011 31 1 3.9330 0.9080 0.8784 32 1 3.8988 4.5652 1.2025 33 1 2.5311 3.4344 1.3405 34 1 4.3721 3.1345 5.6569 35 1 2.5756 3.4038 -1.3372 36 1 3.8317 4.6262 -1.0273 37 1 3.0380 1.6496 -3.1244 38 1 4.6696 1.1087 -5.0027 39 1 8.1039 2.6018 -4.7007 40 1 7.1740 1.3673 -5.5836 41 1 5.9986 3.1520 -6.8413 42 1 6.9285 4.3866 -5.9584 43 1 7.7605 3.2673 -7.0647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231501520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 14.584098 kcal Electronic energy + Delta-G solvation = -20004.217457 eV Core-core repulsion = 17175.361443 eV Total energy + Delta-G solvation = -2828.856014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.49553 -37.19434 -34.21194 -33.65232 -32.40169 -29.82407 -28.60823 -27.00011 -25.19155 -23.61671 -22.46192 -22.02058 -21.19884 -19.48833 -18.47358 -16.84357 -16.54737 -15.33763 -15.19020 -14.82691 -14.54427 -14.22069 -14.11771 -13.78391 -13.42737 -12.94572 -12.82628 -12.53364 -12.43466 -12.16339 -12.02268 -11.87710 -11.64597 -11.39736 -11.14533 -11.09673 -10.89113 -10.76632 -10.70927 -10.57016 -10.40706 -10.22985 -9.86246 -9.81949 -9.27004 -8.57129 -8.25213 -8.17797 -7.32240 -6.04442 -4.01220 1.23415 1.87768 2.31811 2.95096 3.27084 3.35462 3.36729 4.41721 4.74101 4.84790 4.96384 5.17816 5.19332 5.26651 5.27581 5.30532 5.41411 5.48896 5.53325 5.67913 5.71263 5.74095 5.81639 5.90732 5.95189 6.04075 6.06256 6.08457 6.15170 6.24942 6.37125 6.40310 6.50879 6.52466 6.57836 6.75288 6.84951 6.97901 7.04510 7.59596 7.89126 8.03556 8.66040 9.04933 9.57212 11.08753 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.004839 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.968489 B = 5785.007313 C = 6947.112815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.158 4.158 4 C 0.065 3.935 5 N -0.519 5.519 6 C 0.159 3.841 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.110 3.890 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.134 4.134 19 C -0.195 4.195 20 C -0.050 4.050 21 C -0.146 4.146 22 S 0.118 5.882 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.026 0.974 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -1.324 -19.194 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.241 5.241 6 C 0.033 3.967 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.020 4.020 16 C -0.259 4.259 17 C -0.178 4.178 18 C -0.165 4.165 19 C -0.313 4.313 20 C -0.089 4.089 21 C -0.204 4.204 22 S 0.383 5.617 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.023 -0.240 -18.369 18.371 hybrid contribution -2.588 -0.281 -0.201 2.611 sum -2.565 -0.521 -18.570 18.753 Atomic orbital electron populations 1.21772 0.96609 1.00901 1.01475 1.21411 0.95127 0.97299 1.01726 1.22251 0.98992 0.96671 1.01736 1.22088 0.91372 0.90797 1.02120 1.62193 1.59098 1.01973 1.00821 1.20270 0.93824 0.94622 0.88010 1.20988 1.27290 1.17577 0.88412 0.90135 1.24868 0.95870 0.96531 0.95926 1.69887 1.43875 1.41732 0.98423 0.86918 0.81642 0.83552 0.77973 1.20367 1.21169 1.19219 1.20637 0.95404 0.98078 0.87885 1.24492 0.97960 1.02419 1.01046 1.19992 1.01689 0.99987 0.96179 1.19927 0.93726 1.02362 1.00487 1.24459 1.00610 1.04438 1.01750 1.20024 0.94797 1.00438 0.93645 1.21782 1.01744 0.99385 0.97518 1.84304 1.15660 1.40878 1.20893 0.93320 0.93275 0.92803 0.92666 0.91739 0.90935 0.93065 0.92381 0.89534 0.95623 0.99084 0.92704 0.93100 0.90578 0.85018 0.85206 0.91015 0.90475 0.92486 0.92495 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.85 16 3 C -0.16 -2.64 4.58 -26.73 -0.12 -2.76 16 4 C 0.06 1.22 5.01 -3.83 -0.02 1.20 16 5 N -0.52 -10.67 4.65 -237.52 -1.10 -11.78 16 6 C 0.16 3.76 3.56 -4.97 -0.02 3.75 16 7 C -0.50 -14.12 9.05 -34.44 -0.31 -14.43 16 8 H 0.08 2.48 7.35 -52.49 -0.39 2.09 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 11 Si 0.87 21.35 27.47 -169.99 -4.67 16.69 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 15 C 0.11 1.89 5.34 -4.97 -0.03 1.87 16 16 C -0.14 -2.21 5.46 -36.00 -0.20 -2.41 16 17 C -0.15 -2.08 9.06 -41.21 -0.37 -2.45 16 18 C -0.13 -1.71 10.05 -41.21 -0.41 -2.12 16 19 C -0.19 -2.47 5.76 -36.01 -0.21 -2.67 16 20 C -0.05 -0.49 6.43 -27.89 -0.18 -0.67 16 21 C -0.15 -1.24 9.89 37.15 0.37 -0.87 16 22 S 0.12 1.73 23.31 -107.50 -2.51 -0.77 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.40 6.24 -51.93 -0.32 1.07 16 29 H 0.05 0.79 6.30 -51.93 -0.33 0.47 16 30 H 0.06 1.02 6.65 -51.93 -0.35 0.68 16 31 H 0.09 1.87 6.82 -51.93 -0.35 1.52 16 32 H 0.03 0.63 6.92 -51.93 -0.36 0.27 16 33 H -0.01 -0.20 5.44 -51.92 -0.28 -0.48 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.05 0.83 5.89 -51.93 -0.31 0.52 16 36 H 0.08 1.31 7.81 -51.93 -0.41 0.90 16 37 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -29.66 350.92 -10.94 -40.60 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.33 Total: -0.28 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.39 Total: -23.07 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.33 Total: -38.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.51 Total: -0.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.66 -10.94 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231501520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.180 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds