Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 N 1.46898 * 109.47249 * 182.26538 * 3 2 1 5 5 C 1.46896 * 111.00103 * 299.25757 * 4 3 2 6 6 C 1.50695 * 109.47436 * 288.76739 * 5 4 3 7 7 H 1.07995 * 120.00278 * 1.46183 * 6 5 4 8 8 C 1.37884 * 120.00203 * 181.46954 * 6 5 4 9 9 N 1.31514 * 120.00260 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99887 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46898 * 90.00156 * 10 8 6 12 12 H 1.48494 * 109.47190 * 210.00375 * 10 8 6 13 13 H 1.48504 * 109.47182 * 330.00752 * 10 8 6 14 14 C 1.46898 * 111.00174 * 63.21466 * 4 3 2 15 15 C 1.50705 * 109.46855 * 66.04192 * 14 4 3 16 16 C 1.38172 * 120.00712 * 259.97808 * 15 14 4 17 17 C 1.38201 * 120.08249 * 180.02562 * 16 15 14 18 18 C 1.38522 * 120.08489 * 0.04966 * 17 16 15 19 19 F 1.35098 * 119.99821 * 179.97438 * 18 17 16 20 20 C 1.38335 * 120.00556 * 359.94806 * 18 17 16 21 21 C 1.38719 * 119.92194 * 0.02864 * 20 18 17 22 22 O 1.35891 * 120.04515 * 179.71999 * 21 20 18 23 23 C 1.42907 * 116.99932 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46781 * 299.99809 * 1 2 3 26 26 H 1.08997 * 109.46963 * 59.99207 * 1 2 3 27 27 H 1.09002 * 109.47203 * 240.00522 * 2 1 3 28 28 H 1.08996 * 109.47414 * 120.00516 * 2 1 3 29 29 H 1.09008 * 109.46963 * 62.26678 * 3 2 1 30 30 H 1.08995 * 109.47122 * 302.27001 * 3 2 1 31 31 H 1.09008 * 109.46693 * 48.76301 * 5 4 3 32 32 H 1.09000 * 109.47219 * 168.76067 * 5 4 3 33 33 H 0.96999 * 120.00195 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46829 * 306.04986 * 14 4 3 35 35 H 1.08999 * 109.46965 * 186.04403 * 14 4 3 36 36 H 1.08001 * 119.95887 * 0.02562 * 16 15 14 37 37 H 1.08005 * 119.95793 * 180.02562 * 17 16 15 38 38 H 1.07996 * 120.04243 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.46914 * 179.97438 * 23 22 21 40 40 H 1.08992 * 109.47417 * 299.99868 * 23 22 21 41 41 H 1.09004 * 109.46496 * 60.00117 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5080 1.4428 -0.0547 5 6 4.0785 0.7570 1.1123 6 6 3.8773 1.6052 2.3415 7 1 3.3550 2.5476 2.2678 8 6 4.3603 1.1783 3.5604 9 7 4.1851 1.9188 4.6331 10 14 5.2633 -0.4519 3.6882 11 1 6.7156 -0.2317 3.4699 12 1 5.0480 -1.0326 5.0378 13 1 4.7443 -1.3874 2.6582 14 6 3.9884 0.8411 -1.3058 15 6 3.5859 1.7112 -2.4686 16 6 2.4838 1.3778 -3.2323 17 6 2.1136 2.1743 -4.2993 18 6 2.8472 3.3085 -4.6065 19 9 2.4841 4.0856 -5.6502 20 6 3.9513 3.6457 -3.8442 21 6 4.3227 2.8467 -2.7729 22 8 5.4102 3.1725 -2.0259 23 6 6.1251 4.3517 -2.4009 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7103 1.9445 0.9097 30 1 1.6439 1.9679 -0.8689 31 1 3.5812 -0.2035 1.2483 32 1 5.1446 0.5948 0.9532 33 1 4.5245 1.6183 5.4906 34 1 3.5494 -0.1496 -1.4244 35 1 5.0746 0.7560 -1.2744 36 1 1.9108 0.4935 -2.9951 37 1 1.2515 1.9120 -4.8946 38 1 4.5234 4.5301 -4.0829 39 1 6.9676 4.4962 -1.7246 40 1 6.4923 4.2449 -3.4215 41 1 5.4604 5.2136 -2.3421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231602549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = -53.835526 kcal Electronic energy + Delta-G solvation = -22619.001692 eV Core-core repulsion = 19220.965605 eV Total energy + Delta-G solvation = -3398.036087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.92181 -40.18443 -37.83348 -36.77540 -32.75036 -32.46985 -30.96284 -30.23397 -27.80262 -27.11884 -26.06284 -23.73752 -22.46904 -22.01590 -21.39797 -19.18765 -18.32680 -16.98585 -16.71325 -15.91738 -15.78084 -15.51835 -15.31432 -15.01727 -14.71190 -14.47718 -14.12498 -13.79604 -13.69377 -13.25638 -12.91642 -12.51895 -12.19254 -12.14664 -11.76187 -11.53639 -11.45696 -11.25997 -11.05654 -11.02509 -10.91423 -10.82595 -10.51715 -10.31562 -9.84884 -9.82413 -9.24682 -8.82734 -8.51376 -8.07191 -7.19839 -6.00164 -3.95869 1.15732 1.35608 3.30696 3.36190 3.38153 3.39529 3.61143 4.23240 4.45691 4.70558 4.89506 4.93196 5.01508 5.13254 5.22101 5.29900 5.34953 5.43737 5.46871 5.53854 5.58393 5.75494 5.77671 5.92993 6.04598 6.06478 6.16351 6.23093 6.29211 6.34256 6.46191 6.48413 6.59567 6.77286 6.86645 6.99925 7.08731 7.45901 7.67879 7.97292 8.12134 8.72682 9.10335 9.62182 11.13327 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.005269 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.698492 B = 5313.199647 C = 6266.850346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.064 3.936 4 N -0.514 5.514 5 C 0.159 3.841 6 C -0.500 4.500 7 H 0.079 0.921 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.872 3.128 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.094 3.906 15 C -0.106 4.106 16 C -0.050 4.050 17 C -0.195 4.195 18 C 0.128 3.872 19 F -0.143 7.143 20 C -0.252 4.252 21 C 0.181 3.819 22 O -0.287 6.287 23 C 0.025 3.975 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.056 0.944 31 H -0.004 1.004 32 H 0.021 0.979 33 H 0.262 0.738 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -0.189 -17.758 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.065 4.065 4 N -0.236 5.236 5 C 0.033 3.967 6 C -0.538 4.538 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.034 4.034 15 C -0.107 4.107 16 C -0.069 4.069 17 C -0.214 4.214 18 C 0.109 3.891 19 F -0.122 7.122 20 C -0.272 4.272 21 C 0.134 3.866 22 O -0.198 6.198 23 C -0.070 4.070 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.014 0.986 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.423 0.251 -17.392 17.452 hybrid contribution 0.208 -1.217 -0.176 1.247 sum -1.215 -0.966 -17.569 17.637 Atomic orbital electron populations 1.21655 0.96233 1.00716 1.01524 1.22204 0.95827 1.00518 1.01857 1.22105 0.88039 0.94275 1.02056 1.62185 1.06560 1.54240 1.00587 1.20244 0.94180 0.93341 0.88927 1.21008 1.36304 1.06698 0.89798 0.90268 1.24877 0.95965 0.96743 0.95756 1.69893 1.47107 1.37859 0.99381 0.86912 0.80730 0.85011 0.77391 1.20241 1.21350 1.19308 1.20919 1.00610 0.93437 0.88389 1.19379 0.96175 0.96063 0.99107 1.20751 0.94541 0.98790 0.92827 1.20921 1.02716 0.96228 1.01550 1.17325 0.95131 0.90553 0.86124 1.91474 1.91274 1.73992 1.55419 1.21100 1.01614 1.04376 1.00085 1.18528 0.87177 0.92430 0.88473 1.86305 1.37694 1.43368 1.52434 1.23099 0.96521 0.86377 1.01001 0.93595 0.92542 0.93355 0.92968 0.90960 0.89863 0.92527 0.98645 0.96076 0.92799 0.94470 0.90214 0.84701 0.85006 0.84513 0.87929 0.93081 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.17 -2.71 5.29 -26.73 -0.14 -2.85 16 3 C 0.06 1.19 4.96 -3.82 -0.02 1.17 16 4 N -0.51 -10.56 4.65 -237.52 -1.11 -11.67 16 5 C 0.16 3.79 3.63 -4.98 -0.02 3.77 16 6 C -0.50 -14.09 9.15 -34.44 -0.32 -14.40 16 7 H 0.08 2.46 7.65 -52.49 -0.40 2.06 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 10 Si 0.87 21.44 27.44 -169.99 -4.66 16.78 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.32 6.58 56.52 0.37 -5.95 16 14 C 0.09 1.61 4.56 -4.97 -0.02 1.59 16 15 C -0.11 -1.61 4.59 -104.46 -0.48 -2.09 16 16 C -0.05 -0.65 8.63 -39.62 -0.34 -0.99 16 17 C -0.20 -2.37 10.02 -39.49 -0.40 -2.76 16 18 C 0.13 1.68 7.30 -39.44 -0.29 1.39 16 19 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 20 C -0.25 -3.35 9.02 -39.37 -0.35 -3.70 16 21 C 0.18 2.74 6.66 -39.22 -0.26 2.48 16 22 O -0.29 -4.52 9.72 -19.40 -0.19 -4.71 16 23 C 0.03 0.28 9.81 101.05 0.99 1.27 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.78 5.99 -51.93 -0.31 0.46 16 28 H 0.07 1.37 6.31 -51.93 -0.33 1.04 16 29 H 0.08 1.78 7.18 -51.92 -0.37 1.40 16 30 H 0.06 0.97 6.46 -51.93 -0.34 0.63 16 31 H 0.00 -0.09 5.01 -51.92 -0.26 -0.35 16 32 H 0.02 0.51 7.17 -51.93 -0.37 0.14 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.04 0.59 5.92 -51.93 -0.31 0.28 16 35 H 0.08 1.41 7.57 -51.93 -0.39 1.02 16 36 H 0.14 1.50 7.79 -52.49 -0.41 1.09 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.14 1.54 6.30 -52.49 -0.33 1.21 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 41 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -31.07 330.47 -7.44 -38.50 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.90 Total: -0.29 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.38 Total: -14.88 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.33 Total: -38.56 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.66 Total: 16.78 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.07 -7.44 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231602549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.333 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds