Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 N 1.46898 * 109.47249 * 182.26538 * 3 2 1 5 5 C 1.46896 * 111.00103 * 299.25757 * 4 3 2 6 6 C 1.50695 * 109.47436 * 288.76739 * 5 4 3 7 7 H 1.07995 * 120.00278 * 1.46183 * 6 5 4 8 8 C 1.37884 * 120.00203 * 181.46954 * 6 5 4 9 9 N 1.31514 * 120.00260 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99887 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46898 * 90.00156 * 10 8 6 12 12 H 1.48494 * 109.47190 * 210.00375 * 10 8 6 13 13 H 1.48504 * 109.47182 * 330.00752 * 10 8 6 14 14 C 1.46898 * 111.00174 * 63.21466 * 4 3 2 15 15 C 1.50705 * 109.46855 * 66.04192 * 14 4 3 16 16 C 1.38172 * 120.00712 * 259.97808 * 15 14 4 17 17 C 1.38201 * 120.08249 * 180.02562 * 16 15 14 18 18 C 1.38522 * 120.08489 * 0.04966 * 17 16 15 19 19 F 1.35098 * 119.99821 * 179.97438 * 18 17 16 20 20 C 1.38335 * 120.00556 * 359.94806 * 18 17 16 21 21 C 1.38719 * 119.92194 * 0.02864 * 20 18 17 22 22 O 1.35891 * 120.04515 * 179.71999 * 21 20 18 23 23 C 1.42907 * 116.99932 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46781 * 299.99809 * 1 2 3 26 26 H 1.08997 * 109.46963 * 59.99207 * 1 2 3 27 27 H 1.09002 * 109.47203 * 240.00522 * 2 1 3 28 28 H 1.08996 * 109.47414 * 120.00516 * 2 1 3 29 29 H 1.09008 * 109.46963 * 62.26678 * 3 2 1 30 30 H 1.08995 * 109.47122 * 302.27001 * 3 2 1 31 31 H 1.09008 * 109.46693 * 48.76301 * 5 4 3 32 32 H 1.09000 * 109.47219 * 168.76067 * 5 4 3 33 33 H 0.96999 * 120.00195 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46829 * 306.04986 * 14 4 3 35 35 H 1.08999 * 109.46965 * 186.04403 * 14 4 3 36 36 H 1.08001 * 119.95887 * 0.02562 * 16 15 14 37 37 H 1.08005 * 119.95793 * 180.02562 * 17 16 15 38 38 H 1.07996 * 120.04243 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.46914 * 179.97438 * 23 22 21 40 40 H 1.08992 * 109.47417 * 299.99868 * 23 22 21 41 41 H 1.09004 * 109.46496 * 60.00117 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5080 1.4428 -0.0547 5 6 4.0785 0.7570 1.1123 6 6 3.8773 1.6052 2.3415 7 1 3.3550 2.5476 2.2678 8 6 4.3603 1.1783 3.5604 9 7 4.1851 1.9188 4.6331 10 14 5.2633 -0.4519 3.6882 11 1 6.7156 -0.2317 3.4699 12 1 5.0480 -1.0326 5.0378 13 1 4.7443 -1.3874 2.6582 14 6 3.9884 0.8411 -1.3058 15 6 3.5859 1.7112 -2.4686 16 6 2.4838 1.3778 -3.2323 17 6 2.1136 2.1743 -4.2993 18 6 2.8472 3.3085 -4.6065 19 9 2.4841 4.0856 -5.6502 20 6 3.9513 3.6457 -3.8442 21 6 4.3227 2.8467 -2.7729 22 8 5.4102 3.1725 -2.0259 23 6 6.1251 4.3517 -2.4009 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7103 1.9445 0.9097 30 1 1.6439 1.9679 -0.8689 31 1 3.5812 -0.2035 1.2483 32 1 5.1446 0.5948 0.9532 33 1 4.5245 1.6183 5.4906 34 1 3.5494 -0.1496 -1.4244 35 1 5.0746 0.7560 -1.2744 36 1 1.9108 0.4935 -2.9951 37 1 1.2515 1.9120 -4.8946 38 1 4.5234 4.5301 -4.0829 39 1 6.9676 4.4962 -1.7246 40 1 6.4923 4.2449 -3.4215 41 1 5.4604 5.2136 -2.3421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231602549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = -73.571510 kcal Electronic energy + Delta-G solvation = -22619.857509 eV Core-core repulsion = 19220.965605 eV Total energy + Delta-G solvation = -3398.891904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.92849 -41.26624 -39.19572 -37.95668 -34.78482 -33.79397 -32.36880 -31.26146 -29.50732 -28.19741 -27.34527 -25.30074 -23.61461 -23.39308 -22.67667 -20.72402 -19.36468 -18.83990 -18.03757 -17.03604 -16.83513 -16.76839 -16.56032 -16.28060 -16.07941 -15.93799 -15.50340 -15.22904 -14.81137 -14.54820 -14.43057 -14.02532 -13.41351 -13.30791 -13.27750 -12.89180 -12.69048 -12.62333 -12.44781 -12.31659 -12.19951 -12.15152 -11.91993 -11.85109 -11.71789 -11.40032 -11.26830 -10.72298 -9.85292 -9.14793 -8.76742 -8.23713 -6.25004 0.11219 0.34837 1.36192 1.37104 1.47710 2.37262 2.39139 2.55861 3.10053 3.22627 3.47449 3.74584 3.83466 4.05373 4.15562 4.16409 4.18737 4.33492 4.39082 4.46474 4.53034 4.54606 4.69208 4.73207 4.77915 4.84080 4.99654 5.03276 5.05618 5.10586 5.14557 5.22647 5.29870 5.41779 5.43624 5.51369 5.63384 5.78583 6.06116 6.44769 6.50299 6.74500 6.80674 7.37671 8.93481 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.005269 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.698492 B = 5313.199647 C = 6266.850346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.158 4.158 3 C 0.070 3.930 4 N -0.534 5.534 5 C 0.171 3.829 6 C -0.504 4.504 7 H 0.031 0.969 8 C 0.007 3.993 9 N -0.952 5.952 10 Si 0.944 3.056 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.248 1.248 14 C 0.101 3.899 15 C -0.127 4.127 16 C -0.043 4.043 17 C -0.187 4.187 18 C 0.122 3.878 19 F -0.142 7.142 20 C -0.253 4.253 21 C 0.164 3.836 22 O -0.319 6.319 23 C 0.018 3.982 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.002 0.998 32 H 0.020 0.980 33 H 0.265 0.735 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -1.945 -20.252 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C -0.058 4.058 4 N -0.257 5.257 5 C 0.044 3.956 6 C -0.542 4.542 7 H 0.050 0.950 8 C -0.189 4.189 9 N -0.593 5.593 10 Si 0.767 3.233 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.172 1.172 14 C -0.026 4.026 15 C -0.129 4.129 16 C -0.062 4.062 17 C -0.206 4.206 18 C 0.103 3.897 19 F -0.121 7.121 20 C -0.273 4.273 21 C 0.117 3.883 22 O -0.232 6.232 23 C -0.076 4.076 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.019 0.981 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.170 0.830 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.870 -1.499 -19.922 20.065 hybrid contribution 0.303 -0.515 0.524 0.795 sum -1.567 -2.014 -19.398 19.565 Atomic orbital electron populations 1.21624 0.94060 1.02085 1.01897 1.22106 0.97728 0.98329 1.01493 1.21992 0.87137 0.95886 1.00777 1.62012 1.07695 1.54914 1.01039 1.19954 0.94252 0.92740 0.88607 1.21225 1.35344 1.05545 0.92119 0.95017 1.25801 0.96973 1.00999 0.95158 1.70058 1.48808 1.40312 1.00159 0.85765 0.79464 0.80092 0.77938 1.19303 1.20919 1.17182 1.20847 0.99984 0.94550 0.87255 1.19378 0.97738 0.96481 0.99283 1.20961 0.93570 0.99376 0.92284 1.21210 1.03000 0.95242 1.01144 1.17509 0.95199 0.90942 0.86061 1.91479 1.91223 1.74054 1.55342 1.21232 1.01898 1.04622 0.99504 1.18724 0.87423 0.92998 0.89136 1.86249 1.38351 1.45061 1.53539 1.23323 0.96514 0.85245 1.02544 0.91704 0.94033 0.91187 0.90597 0.93852 0.93973 0.90649 0.98067 0.96243 0.92635 0.92672 0.91391 0.82468 0.82234 0.83029 0.87263 0.90825 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.16 -4.91 5.29 30.59 0.16 -4.75 16 3 C 0.07 2.61 4.96 86.30 0.43 3.04 16 4 N -0.53 -22.09 4.65 -905.36 -4.21 -26.30 16 5 C 0.17 8.24 3.63 85.56 0.31 8.55 16 6 C -0.50 -29.58 9.15 25.60 0.23 -29.35 16 7 H 0.03 2.10 7.65 -2.91 -0.02 2.08 16 8 C 0.01 0.42 5.47 84.66 0.46 0.89 16 9 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 10 Si 0.94 44.49 27.44 68.60 1.88 46.37 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.25 -10.81 6.58 99.48 0.66 -10.15 16 14 C 0.10 3.33 4.56 85.56 0.39 3.72 16 15 C -0.13 -3.67 4.59 -19.76 -0.09 -3.76 16 16 C -0.04 -0.97 8.63 22.25 0.19 -0.78 16 17 C -0.19 -3.88 10.02 22.33 0.22 -3.65 16 18 C 0.12 2.89 7.30 22.36 0.16 3.06 16 19 F -0.14 -3.34 17.27 44.97 0.78 -2.57 16 20 C -0.25 -6.30 9.02 22.41 0.20 -6.10 16 21 C 0.16 4.81 6.66 22.50 0.15 4.96 16 22 O -0.32 -10.08 9.72 -92.32 -0.90 -10.98 16 23 C 0.02 0.39 9.81 113.37 1.11 1.51 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 2.00 5.99 -2.39 -0.01 1.99 16 28 H 0.04 1.60 6.31 -2.39 -0.02 1.59 16 29 H 0.04 1.89 7.18 -2.38 -0.02 1.87 16 30 H 0.08 2.49 6.46 -2.39 -0.02 2.48 16 31 H 0.00 0.08 5.01 -2.38 -0.01 0.07 16 32 H 0.02 0.94 7.17 -2.39 -0.02 0.92 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.06 1.60 5.92 -2.38 -0.01 1.59 16 35 H 0.07 2.38 7.57 -2.39 -0.02 2.36 16 36 H 0.16 2.77 7.79 -2.91 -0.02 2.75 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.15 3.16 6.30 -2.91 -0.02 3.14 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 41 H 0.06 1.22 7.66 -2.38 -0.02 1.20 16 Total: -1.00 -69.95 330.47 3.48 -66.47 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.97 Total: 12.60 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.65 Total: -25.45 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -3.91 Total: -86.45 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.90 Total: -10.98 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -69.95 3.48 -66.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231602549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.097 kcal (2) G-P(sol) polarization free energy of solvation -69.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds