Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 C 1.53007 * 109.47087 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99797 * 275.08009 * 5 4 3 7 7 H 1.08000 * 119.99986 * 321.67316 * 6 5 4 8 8 C 1.38804 * 120.00029 * 141.68206 * 6 5 4 9 9 N 1.31619 * 120.00099 * 340.96720 * 8 6 5 10 10 Si 1.86808 * 120.00055 * 160.97592 * 8 6 5 11 11 H 1.48500 * 109.46939 * 89.99390 * 10 8 6 12 12 H 1.48493 * 109.46929 * 209.99650 * 10 8 6 13 13 H 1.48500 * 109.46692 * 329.99640 * 10 8 6 14 14 C 1.46500 * 120.00079 * 95.07678 * 5 4 3 15 15 C 1.50704 * 109.46880 * 89.99893 * 14 5 4 16 16 C 1.38173 * 120.00297 * 260.02206 * 15 14 5 17 17 C 1.38209 * 120.08025 * 179.97438 * 16 15 14 18 18 C 1.38520 * 120.08213 * 359.97438 * 17 16 15 19 19 F 1.35106 * 119.99657 * 179.97438 * 18 17 16 20 20 C 1.38342 * 120.00731 * 359.76236 * 18 17 16 21 21 C 1.38712 * 119.91846 * 0.51133 * 20 18 17 22 22 O 1.35894 * 120.04116 * 179.74260 * 21 20 18 23 23 C 1.42901 * 117.00022 * 359.72771 * 22 21 20 24 24 H 1.08999 * 109.47318 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46667 * 300.00147 * 1 2 3 26 26 H 1.08994 * 109.47617 * 59.99637 * 1 2 3 27 27 H 1.09002 * 109.47134 * 240.00447 * 2 1 3 28 28 H 1.09000 * 109.47543 * 119.99637 * 2 1 3 29 29 H 1.08992 * 109.47338 * 60.00198 * 3 2 1 30 30 H 1.09004 * 109.47400 * 299.99994 * 3 2 1 31 31 H 1.08996 * 109.46772 * 59.99636 * 4 3 2 32 32 H 1.09004 * 109.46613 * 300.00008 * 4 3 2 33 33 H 0.96997 * 119.99937 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47332 * 329.99858 * 14 5 4 35 35 H 1.09005 * 109.47119 * 209.99618 * 14 5 4 36 36 H 1.07998 * 119.95876 * 359.97438 * 16 15 14 37 37 H 1.07995 * 119.95760 * 179.97438 * 17 16 15 38 38 H 1.08001 * 120.03845 * 180.28230 * 20 18 17 39 39 H 1.08999 * 109.47167 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.47445 * 60.00073 * 23 22 21 41 41 H 1.09002 * 109.47357 * 299.99698 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1870 3.5050 -1.1810 7 1 4.5399 2.9930 -2.0640 8 6 3.8641 4.8535 -1.2431 9 7 3.0993 5.3905 -0.3162 10 14 4.5148 5.9064 -2.6423 11 1 3.5516 5.8783 -3.7722 12 1 4.6855 7.3044 -2.1718 13 1 5.8247 5.3730 -3.0951 14 6 4.4088 3.4762 1.2639 15 6 5.8633 3.2283 1.5708 16 6 6.2213 2.2446 2.4727 17 6 7.5547 2.0155 2.7549 18 6 8.5356 2.7711 2.1337 19 9 9.8386 2.5460 2.4112 20 6 8.1814 3.7531 1.2260 21 6 6.8430 3.9871 0.9470 22 8 6.4920 4.9547 0.0597 23 6 7.5534 5.6969 -0.5443 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 2.8734 6.3328 -0.3598 34 1 3.7937 3.0686 2.0661 35 1 4.2329 4.5487 1.1803 36 1 5.4581 1.6541 2.9578 37 1 7.8322 1.2465 3.4604 38 1 8.9460 4.3394 0.7380 39 1 7.1365 6.4351 -1.2293 40 1 8.2047 5.0176 -1.0942 41 1 8.1285 6.2044 0.2301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231605193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = -47.076905 kcal Electronic energy + Delta-G solvation = -22911.298729 eV Core-core repulsion = 19513.555717 eV Total energy + Delta-G solvation = -3397.743011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.53087 -39.54396 -36.81768 -36.00684 -33.94951 -31.42434 -30.51535 -29.77328 -27.71537 -26.88490 -25.26708 -23.74927 -21.94690 -21.57342 -20.59137 -19.81577 -17.91696 -16.69784 -16.44862 -15.44079 -15.29263 -15.00621 -14.85376 -14.74324 -14.53735 -14.07179 -13.70814 -13.50596 -13.35697 -13.10207 -12.57933 -12.23587 -11.95707 -11.74015 -11.62426 -11.23327 -11.12488 -10.93748 -10.68783 -10.58769 -10.46584 -10.44094 -10.33196 -10.19841 -9.85154 -9.84409 -9.60139 -8.40756 -8.33683 -7.50363 -6.49950 -5.71219 -3.26684 1.67210 1.85368 3.33663 3.41912 3.44919 3.92235 4.14287 4.56486 4.68236 5.17423 5.35466 5.38907 5.40781 5.47379 5.50081 5.56907 5.63364 5.70732 5.82482 5.88427 5.92505 6.05302 6.11236 6.24723 6.42514 6.45080 6.47193 6.50040 6.53934 6.61952 6.69007 6.75060 6.91153 7.08610 7.15218 7.32116 7.35489 7.74272 7.89527 8.05346 8.61039 9.25890 9.89354 10.45990 11.30613 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.007541 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.596741 B = 3712.221757 C = 5556.079647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.150 3.850 5 N -0.573 5.573 6 C -0.246 4.246 7 H 0.053 0.947 8 C 0.035 3.965 9 N -0.885 5.885 10 Si 0.887 3.113 11 H -0.292 1.292 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.182 3.818 15 C -0.115 4.115 16 C -0.065 4.065 17 C -0.198 4.198 18 C 0.109 3.891 19 F -0.151 7.151 20 C -0.257 4.257 21 C 0.178 3.822 22 O -0.260 6.260 23 C 0.022 3.978 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.252 0.748 34 H 0.033 0.967 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -4.518 3.947 7.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.171 4.171 4 C 0.024 3.976 5 N -0.292 5.292 6 C -0.375 4.375 7 H 0.070 0.930 8 C -0.165 4.165 9 N -0.527 5.527 10 Si 0.717 3.283 11 H -0.220 1.220 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.056 3.944 15 C -0.119 4.119 16 C -0.084 4.084 17 C -0.217 4.217 18 C 0.089 3.911 19 F -0.130 7.130 20 C -0.277 4.277 21 C 0.130 3.870 22 O -0.171 6.171 23 C -0.073 4.073 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.411 -4.276 3.873 7.262 hybrid contribution 1.023 0.630 -0.774 1.429 sum 5.433 -3.645 3.099 7.240 Atomic orbital electron populations 1.21756 0.96853 1.00305 1.01676 1.21537 0.95048 0.98777 1.00774 1.22133 0.99016 0.93724 1.02255 1.20911 0.91469 0.87303 0.97959 1.43726 1.72439 1.10007 1.02988 1.18825 1.37629 0.92419 0.88640 0.92953 1.24932 0.96214 0.98475 0.96880 1.69891 1.35209 1.12252 1.35354 0.86617 0.79225 0.80095 0.82353 1.22008 1.21565 1.20331 1.19926 0.84653 1.02927 0.86873 1.20768 0.99989 0.95130 0.95965 1.20698 0.94632 0.96322 0.96791 1.20849 0.92874 1.03155 1.04833 1.17252 0.77477 0.97898 0.98470 1.91428 1.34571 1.94150 1.92812 1.21064 0.96524 1.04360 1.05756 1.18640 0.90756 0.88556 0.89023 1.86568 1.32128 1.44954 1.53422 1.23015 0.91232 0.95694 0.97398 0.93812 0.93109 0.92961 0.92818 0.93034 0.92942 0.91825 0.94589 0.94873 0.93740 0.94882 0.87124 0.85375 0.85836 0.85306 0.89211 0.93094 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.13 -2.52 5.51 -26.73 -0.15 -2.67 16 4 C 0.15 3.07 5.68 -4.04 -0.02 3.04 16 5 N -0.57 -13.60 2.41 -174.61 -0.42 -14.02 16 6 C -0.25 -6.42 8.62 -15.06 -0.13 -6.55 16 7 H 0.05 1.42 7.90 -52.49 -0.41 1.00 16 8 C 0.04 0.93 3.88 -17.43 -0.07 0.87 16 9 N -0.88 -24.31 11.37 55.49 0.63 -23.68 16 10 Si 0.89 21.05 27.45 -169.99 -4.67 16.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.18 4.12 5.07 -5.19 -0.03 4.09 16 15 C -0.11 -2.31 5.48 -104.46 -0.57 -2.89 16 16 C -0.07 -1.12 9.66 -39.62 -0.38 -1.50 16 17 C -0.20 -3.19 10.02 -39.49 -0.40 -3.58 16 18 C 0.11 1.86 7.30 -39.44 -0.29 1.58 16 19 F -0.15 -2.49 17.27 2.25 0.04 -2.45 16 20 C -0.26 -4.58 9.02 -39.37 -0.35 -4.93 16 21 C 0.18 3.58 6.66 -39.23 -0.26 3.32 16 22 O -0.26 -5.53 7.02 -19.41 -0.14 -5.66 16 23 C 0.02 0.38 9.51 101.05 0.96 1.34 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.03 0.70 7.93 -51.93 -0.41 0.29 16 35 H 0.11 2.86 5.18 -51.93 -0.27 2.59 16 36 H 0.13 1.91 8.04 -52.49 -0.42 1.49 16 37 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 39 H 0.09 1.50 6.88 -51.93 -0.36 1.14 16 40 H 0.05 0.78 7.65 -51.93 -0.40 0.39 16 41 H 0.05 0.67 7.67 -51.93 -0.40 0.28 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -27.67 336.12 -7.32 -35.00 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.36 Total: 0.97 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.48 Total: -11.60 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.21 Total: -37.70 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.14 Total: -5.66 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.67 -7.32 -35.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231605193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.080 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds