Wall clock time and date at job start Tue Mar 31 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46937 * 2 1 4 4 C 1.46898 * 110.99796 * 299.60738 * 3 2 1 5 5 C 1.50694 * 109.47454 * 297.03940 * 4 3 2 6 6 H 1.08000 * 119.99751 * 4.64286 * 5 4 3 7 7 C 1.37882 * 120.00023 * 184.64888 * 5 4 3 8 8 N 1.31510 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00018 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47380 * 59.99228 * 9 7 5 11 11 H 1.48502 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46911 * 299.99880 * 9 7 5 13 13 C 1.46904 * 111.00042 * 63.56483 * 3 2 1 14 14 C 1.50702 * 109.46867 * 73.06125 * 13 3 2 15 15 C 1.38754 * 120.34466 * 96.37165 * 14 13 3 16 16 C 1.38380 * 118.53599 * 180.22594 * 15 14 13 17 17 C 1.39074 * 119.15206 * 359.50475 * 16 15 14 18 18 N 1.38992 * 119.68721 * 180.23087 * 17 16 15 19 19 C 1.46503 * 120.00225 * 11.03766 * 18 17 16 20 20 C 1.46501 * 120.00120 * 191.04380 * 18 17 16 21 21 N 1.32436 * 120.62430 * 0.50009 * 17 16 15 22 22 C 1.32138 * 121.58812 * 359.75232 * 21 17 16 23 23 F 1.35103 * 119.60676 * 180.02562 * 22 21 17 24 24 H 1.08999 * 109.47252 * 185.53643 * 1 2 3 25 25 H 1.08998 * 109.46997 * 305.53955 * 1 2 3 26 26 H 1.08999 * 109.47402 * 65.53747 * 1 2 3 27 27 H 1.09001 * 109.46795 * 240.00263 * 2 1 3 28 28 H 1.08996 * 109.46787 * 120.00057 * 2 1 3 29 29 H 1.08999 * 109.47258 * 57.04719 * 4 3 2 30 30 H 1.09009 * 109.46561 * 177.04019 * 4 3 2 31 31 H 0.97000 * 119.99650 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46783 * 313.06726 * 13 3 2 33 33 H 1.08994 * 109.46627 * 193.06470 * 13 3 2 34 34 H 1.08000 * 120.73511 * 359.94623 * 15 14 13 35 35 H 1.07999 * 120.42310 * 179.74545 * 16 15 14 36 36 H 1.09005 * 109.47141 * 5.58974 * 19 18 17 37 37 H 1.08994 * 109.47754 * 125.59493 * 19 18 17 38 38 H 1.09005 * 109.47108 * 245.60107 * 19 18 17 39 39 H 1.08993 * 109.47251 * 89.99542 * 20 18 17 40 40 H 1.08998 * 109.46849 * 209.99811 * 20 18 17 41 41 H 1.09003 * 109.46561 * 329.99170 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5563 2.1072 -1.1924 5 6 2.1263 1.4570 -2.4266 6 1 2.7067 0.5504 -2.3402 7 6 1.9070 2.0198 -3.6661 8 7 1.1999 3.1236 -3.7712 9 14 2.6130 1.2135 -5.1960 10 1 2.0703 -0.1627 -5.3256 11 1 2.2369 2.0082 -6.3928 12 1 4.0927 1.1536 -5.0860 13 6 1.6195 2.0849 1.2281 14 6 2.4391 1.5762 2.3859 15 6 3.5745 2.2606 2.7952 16 6 4.3019 1.7575 3.8595 17 6 3.8680 0.5948 4.4873 18 7 4.5874 0.0824 5.5605 19 6 5.6473 0.8816 6.1804 20 6 4.2859 -1.2570 6.0718 21 7 2.7787 -0.0316 4.0689 22 6 2.0668 0.4220 3.0523 23 9 0.9619 -0.2487 2.6592 24 1 -0.3634 -1.0229 0.0991 25 1 -0.3633 0.5973 0.8362 26 1 -0.3634 0.4255 -0.9354 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.4676 2.0766 -1.2354 30 1 1.8889 3.1440 -1.1412 31 1 1.0452 3.5193 -4.6432 32 1 0.5627 1.9017 1.4227 33 1 1.7865 3.1551 1.1071 34 1 3.8864 3.1635 2.2914 35 1 5.1930 2.2634 4.2008 36 1 5.6594 1.8767 5.7355 37 1 5.4610 0.9645 7.2510 38 1 6.6104 0.3983 6.0155 39 1 4.8960 -1.9920 5.5471 40 1 4.5063 -1.2967 7.1386 41 1 3.2309 -1.4784 5.9104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233115097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:38 Heat of formation + Delta-G solvation = 22.780038 kcal Electronic energy + Delta-G solvation = -22438.837962 eV Core-core repulsion = 19076.416926 eV Total energy + Delta-G solvation = -3362.421036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.80765 -40.21183 -37.47711 -36.24098 -32.94622 -32.36830 -30.81727 -29.17747 -28.35252 -27.37030 -25.51629 -24.02651 -22.92782 -22.87437 -21.28921 -19.26483 -17.89311 -17.37313 -16.38888 -16.09056 -15.98706 -15.27401 -14.94102 -14.85407 -14.72500 -14.47518 -13.78426 -13.43905 -13.14435 -12.95299 -12.82486 -12.74370 -12.48670 -12.33845 -12.12856 -11.80568 -11.54426 -11.27348 -11.02705 -10.90409 -10.71962 -10.50251 -10.01255 -9.88679 -9.66709 -9.50643 -9.44707 -9.12253 -8.39951 -7.55758 -7.11104 -5.99151 -3.99452 1.20926 1.45652 2.69133 3.36213 3.39845 3.43275 3.79488 3.92075 4.46664 4.68519 4.79436 4.99650 5.07374 5.10224 5.12820 5.22747 5.35178 5.40791 5.41203 5.46859 5.67478 5.74021 5.90969 6.01202 6.03079 6.10299 6.16888 6.30387 6.50109 6.59635 6.66856 6.73230 6.80696 7.04409 7.24282 7.36750 7.46448 7.83362 7.92342 8.12664 8.27399 8.60253 9.07359 9.64088 11.11797 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026726 B = 0.003976 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.435490 B = 7039.749303 C = 7359.171305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.056 3.944 3 N -0.529 5.529 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.094 3.906 14 C -0.183 4.183 15 C 0.006 3.994 16 C -0.249 4.249 17 C 0.423 3.577 18 N -0.621 5.621 19 C 0.095 3.905 20 C 0.099 3.901 21 N -0.574 5.574 22 C 0.354 3.646 23 F -0.107 7.107 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.052 0.948 29 H -0.004 1.004 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.136 -3.192 19.674 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.072 4.072 3 N -0.252 5.252 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.035 4.035 14 C -0.189 4.189 15 C -0.020 4.020 16 C -0.274 4.274 17 C 0.189 3.811 18 N -0.337 5.337 19 C -0.048 4.048 20 C -0.044 4.044 21 N -0.297 5.297 22 C 0.200 3.800 23 F -0.086 7.086 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.013 0.987 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.365 -3.913 20.044 21.391 hybrid contribution -0.476 0.109 -1.316 1.404 sum 5.889 -3.804 18.728 19.998 Atomic orbital electron populations 1.22331 0.99149 1.00701 1.01976 1.22082 0.92456 0.91360 1.01327 1.62427 1.59300 1.01981 1.01538 1.19783 0.93981 0.93982 0.85710 1.21118 1.32561 1.10113 0.90463 0.92043 1.24957 0.95471 0.95042 0.99044 1.69943 1.39945 1.19714 1.24331 0.86593 0.79551 0.79265 0.82190 1.20323 1.21408 1.20223 1.20868 0.95414 0.98644 0.88549 1.20449 1.00537 0.96836 1.01077 1.21148 0.90623 0.98024 0.92231 1.21424 1.04563 0.99882 1.01498 1.17704 0.87003 0.88998 0.87369 1.46118 1.37214 1.17328 1.33056 1.21739 0.89388 0.96107 0.97543 1.21540 1.02674 0.82393 0.97830 1.66159 1.08845 1.37058 1.17681 1.17479 0.83872 0.88320 0.90325 1.91610 1.48764 1.79905 1.88294 0.93602 0.93374 0.91575 0.90356 0.92974 0.98660 0.95059 0.92944 0.93874 0.90195 0.83742 0.84477 0.90144 0.92248 0.92551 0.93554 0.92031 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.40 37.16 0.31 -3.24 16 2 C 0.06 1.16 5.26 -3.82 -0.02 1.14 16 3 N -0.53 -11.55 4.66 -237.51 -1.11 -12.66 16 4 C 0.19 4.90 4.41 -4.98 -0.02 4.88 16 5 C -0.50 -14.13 8.59 -34.44 -0.30 -14.42 16 6 H 0.06 1.72 6.71 -52.49 -0.35 1.37 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.09 1.72 4.89 -4.97 -0.02 1.70 16 14 C -0.18 -3.01 5.23 -104.38 -0.55 -3.55 16 15 C 0.01 0.08 9.82 -39.34 -0.39 -0.31 16 16 C -0.25 -3.08 9.24 -39.22 -0.36 -3.44 16 17 C 0.42 5.82 7.33 -155.02 -1.14 4.69 16 18 N -0.62 -6.74 3.39 -189.68 -0.64 -7.39 16 19 C 0.10 0.66 10.53 59.85 0.63 1.29 16 20 C 0.10 0.94 10.59 59.85 0.63 1.57 16 21 N -0.57 -9.27 9.09 -12.78 -0.12 -9.38 16 22 C 0.35 6.01 7.30 -17.37 -0.13 5.89 16 23 F -0.11 -1.88 12.85 2.25 0.03 -1.85 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.89 5.32 -51.93 -0.28 0.61 16 26 H 0.07 1.43 6.65 -51.93 -0.35 1.08 16 27 H 0.08 1.75 6.55 -51.93 -0.34 1.41 16 28 H 0.05 1.03 4.97 -51.93 -0.26 0.77 16 29 H 0.00 -0.12 6.28 -51.93 -0.33 -0.44 16 30 H 0.03 0.86 7.93 -51.92 -0.41 0.45 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.04 0.80 5.48 -51.93 -0.28 0.51 16 33 H 0.08 1.40 7.74 -51.93 -0.40 1.00 16 34 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.14 1.26 5.98 -52.49 -0.31 0.95 16 36 H 0.08 0.50 5.51 -51.93 -0.29 0.21 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.42 8.07 -51.93 -0.42 0.01 16 41 H 0.08 0.90 7.24 -51.93 -0.38 0.52 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -31.60 324.55 -8.31 -39.91 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.64 Total: -2.08 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.44 Total: -2.31 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -1.13 Total: -55.33 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.60 -8.31 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233115097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.693 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds