Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99658 * 2 1 4 4 H 1.08002 * 119.99605 * 203.04263 * 3 2 1 5 5 C 1.38807 * 120.00243 * 23.04011 * 3 2 1 6 6 N 1.31621 * 119.99880 * 13.05917 * 5 3 2 7 7 Si 1.86798 * 119.99998 * 193.05885 * 5 3 2 8 8 H 1.48498 * 109.47170 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47158 * 120.00078 * 7 5 3 10 10 H 1.48502 * 109.47300 * 240.00145 * 7 5 3 11 11 C 1.46495 * 120.00219 * 179.97438 * 2 1 3 12 12 C 1.50692 * 109.47414 * 90.00202 * 11 2 1 13 13 C 1.38238 * 120.00239 * 90.00149 * 12 11 2 14 14 C 1.38234 * 120.00322 * 180.02562 * 13 12 11 15 15 C 1.38234 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00339 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46994 * 89.99759 * 16 15 14 18 18 C 1.38236 * 119.99915 * 269.72911 * 17 16 15 19 19 C 1.38234 * 119.99823 * 179.76907 * 18 17 16 20 20 C 1.38237 * 119.99869 * 0.48349 * 19 18 17 21 21 C 1.38229 * 120.00100 * 359.79137 * 20 19 18 22 22 C 1.38231 * 119.99809 * 90.00224 * 17 16 15 23 23 C 1.38236 * 119.99731 * 0.25593 * 15 14 13 24 24 C 1.38233 * 120.00333 * 359.46805 * 23 15 14 25 25 H 1.08996 * 109.47646 * 275.12741 * 1 2 3 26 26 H 1.08999 * 109.47128 * 35.13067 * 1 2 3 27 27 H 1.08997 * 109.47035 * 155.12268 * 1 2 3 28 28 H 0.97003 * 119.99954 * 180.02562 * 6 5 3 29 29 H 1.09008 * 109.47120 * 330.00122 * 11 2 1 30 30 H 1.09001 * 109.47391 * 210.00816 * 11 2 1 31 31 H 1.07999 * 119.99821 * 359.97438 * 13 12 11 32 32 H 1.08001 * 120.00028 * 179.97438 * 14 13 12 33 33 H 1.08991 * 109.47226 * 209.99994 * 16 15 14 34 34 H 1.09001 * 109.47006 * 330.00214 * 16 15 14 35 35 H 1.08000 * 119.99808 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.99724 * 180.25374 * 19 18 17 37 37 H 1.08003 * 119.99784 * 179.77207 * 20 19 18 38 38 H 1.07995 * 120.00187 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00408 * 0.02562 * 22 17 16 40 40 H 1.08005 * 119.99798 * 179.73081 * 23 15 14 41 41 H 1.08001 * 120.00282 * 180.27940 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4705 6 7 0.4130 2.2596 1.1478 7 14 2.3139 4.0076 0.1423 8 1 3.5661 3.8269 -0.6352 9 1 1.3676 4.8495 -0.6331 10 1 2.6240 4.6722 1.4336 11 6 2.1975 -1.2687 0.0006 12 6 2.4488 -1.7043 -1.4199 13 6 3.6008 -1.3056 -2.0718 14 6 3.8310 -1.7048 -3.3750 15 6 2.9095 -2.5032 -4.0264 16 6 3.1602 -2.9380 -5.4473 17 6 3.9143 -4.2428 -5.4478 18 6 5.2967 -4.2421 -5.4541 19 6 5.9884 -5.4389 -5.4498 20 6 5.2977 -6.6364 -5.4491 21 6 3.9154 -6.6371 -5.4485 22 6 3.2237 -5.4402 -5.4476 23 6 1.7553 -2.8980 -3.3762 24 6 1.5277 -2.5036 -2.0710 25 1 -0.3634 0.0918 1.0235 26 1 -0.3633 0.8405 -0.5914 27 1 -0.3633 -0.9323 -0.4323 28 1 -0.0142 3.0661 1.4763 29 1 1.6084 -2.0282 0.5148 30 1 3.1499 -1.1381 0.5145 31 1 4.3205 -0.6815 -1.5631 32 1 4.7309 -1.3929 -3.8844 33 1 2.2077 -3.0687 -5.9607 34 1 3.7487 -2.1780 -5.9613 35 1 5.8362 -3.3066 -5.4583 36 1 7.0684 -5.4384 -5.4506 37 1 5.8382 -7.5715 -5.4494 38 1 3.3759 -7.5726 -5.4485 39 1 2.1437 -5.4407 -5.4475 40 1 1.0332 -3.5182 -3.8866 41 1 0.6280 -2.8158 -1.5616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233331377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = 49.477999 kcal Electronic energy + Delta-G solvation = -20672.011031 eV Core-core repulsion = 17709.224179 eV Total energy + Delta-G solvation = -2962.786852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66146 -39.67490 -37.41802 -34.90810 -33.24715 -31.85160 -31.57751 -31.32009 -28.55246 -27.87738 -26.01294 -23.76623 -23.36225 -23.06039 -22.16732 -21.25802 -18.73493 -17.64839 -17.00549 -16.85998 -16.41443 -16.05241 -15.94841 -15.67017 -15.42982 -14.97035 -14.59928 -14.28894 -14.27655 -14.10786 -13.75013 -13.39022 -13.10853 -13.00371 -12.86381 -12.78968 -12.56871 -12.32470 -12.13246 -11.96676 -11.86112 -11.78193 -11.76734 -11.62750 -10.66219 -9.76351 -9.68144 -9.60331 -9.30109 -8.76897 -7.82388 -5.31964 0.40697 0.56116 0.64146 0.67120 1.44365 1.45670 1.56206 2.49915 2.89231 3.00188 3.30657 3.87794 3.91813 4.03925 4.07458 4.11467 4.19983 4.26413 4.27372 4.36029 4.36718 4.61095 4.68071 4.73048 4.82012 4.84053 4.91730 4.92774 4.97122 5.14384 5.22621 5.28992 5.31346 5.33043 5.59145 5.63101 5.66782 5.67999 5.68709 5.69323 5.86004 5.94513 6.17864 6.26781 6.32521 7.14566 7.85432 8.30077 9.20481 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.003424 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.168441 B = 8176.161617 C = 8596.808626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.257 4.257 4 H 0.068 0.932 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.267 1.267 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.182 3.818 12 C -0.101 4.101 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.088 4.088 16 C -0.034 4.034 17 C -0.083 4.083 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.122 4.122 25 H 0.007 0.993 26 H 0.011 0.989 27 H 0.029 0.971 28 H 0.248 0.752 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -17.158 -15.386 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.333 5.333 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.795 3.205 8 H -0.191 1.191 9 H -0.219 1.219 10 H -0.217 1.217 11 C 0.056 3.944 12 C -0.104 4.104 13 C -0.139 4.139 14 C -0.138 4.138 15 C -0.089 4.089 16 C -0.071 4.071 17 C -0.083 4.083 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.153 4.153 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.136 4.136 24 C -0.141 4.141 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.642 -17.030 -15.294 24.132 hybrid contribution 0.077 1.296 0.389 1.356 sum 7.719 -15.734 -14.905 23.006 Atomic orbital electron populations 1.20521 0.82768 0.95748 0.97577 1.44083 1.01978 1.01224 1.85986 1.19509 0.98362 0.86723 1.34111 0.91407 1.25774 0.98718 1.01795 0.98657 1.70240 1.20938 1.27477 1.39985 0.85205 0.78002 0.80105 0.77174 1.19120 1.21860 1.21697 1.19852 0.96103 0.87276 0.91145 1.20895 0.94560 0.96001 0.98910 1.21075 0.97541 0.99642 0.95646 1.21140 0.99785 0.98629 0.94255 1.19816 0.94625 0.98018 0.96400 1.19562 1.01221 0.94251 0.92101 1.19897 0.94042 0.94821 0.99511 1.21282 0.93890 0.98970 1.00634 1.21424 1.00859 0.92523 0.99933 1.21453 0.94707 0.98792 1.00394 1.21434 0.94835 0.98533 0.99828 1.21289 1.00626 0.92169 1.00473 1.21170 0.97653 1.00454 0.94281 1.21121 0.98748 0.98596 0.95595 0.97439 0.97005 0.95206 0.94302 0.92557 0.93241 0.87374 0.84963 0.88971 0.89350 0.85471 0.84564 0.84346 0.84384 0.85122 0.84358 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.16 8.98 127.77 1.15 10.31 16 2 N -0.61 -31.67 2.91 -731.33 -2.12 -33.80 16 3 C -0.26 -14.49 9.65 84.03 0.81 -13.68 16 4 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -3.15 5.10 84.86 0.43 -2.71 16 6 N -0.94 -56.85 10.72 21.65 0.23 -56.62 16 7 Si 0.97 46.11 29.57 68.60 2.03 48.14 16 8 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 9 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 C 0.18 7.77 5.77 85.63 0.49 8.26 16 12 C -0.10 -3.82 5.46 -19.87 -0.11 -3.93 16 13 C -0.12 -4.29 9.70 22.27 0.22 -4.08 16 14 C -0.12 -3.56 9.70 22.27 0.22 -3.34 16 15 C -0.09 -2.35 5.12 -19.87 -0.10 -2.45 16 16 C -0.03 -0.69 5.48 29.10 0.16 -0.53 16 17 C -0.08 -1.68 5.12 -19.86 -0.10 -1.78 16 18 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 19 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 20 C -0.14 -2.24 10.05 22.27 0.22 -2.01 16 21 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 22 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 23 C -0.12 -3.28 9.70 22.27 0.22 -3.06 16 24 C -0.12 -4.04 9.70 22.27 0.22 -3.82 16 25 H 0.01 0.41 7.34 -2.39 -0.02 0.39 16 26 H 0.01 0.63 7.35 -2.39 -0.02 0.61 16 27 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.06 2.22 8.02 -2.38 -0.02 2.20 16 30 H 0.05 2.12 7.98 -2.39 -0.02 2.10 16 31 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 34 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 35 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -66.70 347.00 5.82 -60.88 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.99 Total: 12.74 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 4.70 Total: -31.35 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -1.89 Total: -90.42 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -66.70 5.82 -60.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233331377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.358 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds