Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 C 1.53002 * 109.46806 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46777 * 179.62393 * 4 3 2 6 6 C 1.46903 * 111.00066 * 296.96552 * 5 4 3 7 7 C 1.50697 * 109.46997 * 288.58481 * 6 5 4 8 8 H 1.08006 * 120.00101 * 0.91012 * 7 6 5 9 9 C 1.37882 * 120.00047 * 180.91232 * 7 6 5 10 10 N 1.31508 * 120.00289 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99845 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46735 * 90.00032 * 11 9 7 13 13 H 1.48489 * 109.46939 * 209.99986 * 11 9 7 14 14 H 1.48494 * 109.46997 * 330.00525 * 11 9 7 15 15 C 1.46901 * 111.00456 * 60.92016 * 5 4 3 16 16 C 1.50698 * 109.46993 * 66.04128 * 15 5 4 17 17 C 1.33398 * 125.20293 * 90.33922 * 16 15 5 18 18 C 1.38424 * 114.92175 * 180.20960 * 17 16 15 19 19 C 1.50694 * 122.54002 * 179.76376 * 18 17 16 20 20 C 1.33385 * 114.91922 * 359.49171 * 18 17 16 21 21 C 1.50700 * 125.20332 * 180.25253 * 20 18 17 22 22 S 1.75880 * 125.20710 * 270.02848 * 16 15 5 23 23 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47019 * 300.00003 * 1 2 3 25 25 H 1.08997 * 109.46681 * 60.00157 * 1 2 3 26 26 H 1.08995 * 109.47019 * 239.99482 * 2 1 3 27 27 H 1.08997 * 109.46681 * 119.99843 * 2 1 3 28 28 H 1.08995 * 109.47637 * 59.99860 * 3 2 1 29 29 H 1.09000 * 109.46764 * 299.99465 * 3 2 1 30 30 H 1.09000 * 109.47710 * 59.62553 * 4 3 2 31 31 H 1.09002 * 109.46803 * 299.61659 * 4 3 2 32 32 H 1.08998 * 109.47358 * 48.58647 * 6 5 4 33 33 H 1.08998 * 109.47121 * 168.58855 * 6 5 4 34 34 H 0.96993 * 120.00383 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46972 * 306.05031 * 15 5 4 36 36 H 1.08996 * 109.47566 * 186.04302 * 15 5 4 37 37 H 1.08005 * 122.53654 * 359.97307 * 17 16 15 38 38 H 1.09001 * 109.46765 * 269.71385 * 19 18 17 39 39 H 1.08999 * 109.47450 * 149.71132 * 19 18 17 40 40 H 1.08998 * 109.47264 * 29.70782 * 19 18 17 41 41 H 1.09001 * 109.47460 * 89.99815 * 21 20 18 42 42 H 1.08998 * 109.47352 * 210.00086 * 21 20 18 43 43 H 1.09007 * 109.46914 * 329.99571 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0097 6 6 3.6483 3.5232 -1.2364 7 6 4.4287 2.9821 -2.4065 8 1 5.1469 2.1895 -2.2566 9 6 4.2260 3.4991 -3.6686 10 7 4.9074 3.0273 -4.6897 11 14 2.9835 4.8696 -3.9281 12 1 3.6558 6.1840 -3.7680 13 1 2.4133 4.7684 -5.2954 14 1 1.8938 4.7458 -2.9269 15 6 3.6073 3.5537 1.1843 16 6 4.2485 2.9547 2.4095 17 6 5.4108 3.3426 2.9368 18 6 5.8032 2.6410 4.0637 19 6 7.0888 2.9333 4.7936 20 6 4.9545 1.6905 4.4578 21 6 5.1481 0.7945 5.6539 22 16 3.5751 1.6424 3.3676 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9562 -0.8901 30 1 3.9331 0.9229 -0.8874 31 1 3.9337 0.9344 0.8926 32 1 2.5833 3.3636 -1.4049 33 1 3.8437 4.5904 -1.1317 34 1 4.7645 3.3907 -5.5776 35 1 2.5232 3.4767 1.2673 36 1 3.8919 4.6025 1.1013 37 1 6.0028 4.1410 2.5141 38 1 7.8894 2.3208 4.3789 39 1 6.9662 2.7030 5.8519 40 1 7.3407 3.9874 4.6780 41 1 4.7044 1.2613 6.5333 42 1 4.6664 -0.1659 5.4703 43 1 6.2138 0.6398 5.8233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233684714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = 15.246027 kcal Electronic energy + Delta-G solvation = -20203.426362 eV Core-core repulsion = 17374.599052 eV Total energy + Delta-G solvation = -2828.827310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.61113 -37.51956 -34.09604 -32.86395 -31.93297 -29.68852 -28.64437 -28.08216 -25.69173 -24.00500 -23.08134 -21.27320 -21.17122 -19.27334 -18.03338 -16.96083 -16.59536 -15.40937 -15.05604 -14.68612 -14.35947 -14.21487 -14.03117 -13.55752 -13.36001 -12.97181 -12.89002 -12.55102 -12.44634 -12.40861 -12.26491 -11.84462 -11.61947 -11.53349 -11.30770 -11.10246 -10.93310 -10.81063 -10.65287 -10.54040 -10.42475 -10.34306 -9.91284 -9.84656 -9.29232 -8.55342 -8.20090 -8.06240 -7.29216 -6.03619 -4.00127 1.20093 1.82761 2.22628 2.91112 3.27939 3.35747 3.36687 4.42270 4.86092 4.93245 5.00142 5.17318 5.24931 5.26251 5.29680 5.43455 5.44895 5.48786 5.51234 5.62242 5.63791 5.73871 5.76998 5.87522 5.93102 6.03878 6.06117 6.07603 6.13771 6.22440 6.34987 6.46563 6.51100 6.55784 6.61708 6.78872 6.82092 6.94083 7.04436 7.60798 7.89342 8.02403 8.67275 9.06526 9.58091 11.09716 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.005204 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.034942 B = 5379.034499 C = 6507.430931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.158 4.158 4 C 0.059 3.941 5 N -0.517 5.517 6 C 0.158 3.842 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.113 3.887 16 C -0.143 4.143 17 C -0.126 4.126 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.200 4.200 21 C -0.076 4.076 22 S 0.083 5.917 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.061 0.939 32 H -0.002 1.002 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 -2.974 19.067 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.197 4.197 4 C -0.070 4.070 5 N -0.239 5.239 6 C 0.032 3.968 7 C -0.541 4.541 8 H 0.098 0.902 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.699 3.301 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.017 4.017 16 C -0.260 4.260 17 C -0.156 4.156 18 C -0.115 4.115 19 C -0.151 4.151 20 C -0.317 4.317 21 C -0.135 4.135 22 S 0.349 5.651 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.015 0.985 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.042 -3.823 18.767 19.574 hybrid contribution -0.279 1.670 -0.372 1.733 sum -4.321 -2.154 18.395 19.018 Atomic orbital electron populations 1.21770 0.96549 1.00939 1.01476 1.21414 0.95185 0.97170 1.01833 1.22261 0.98978 0.96818 1.01650 1.22201 0.91392 0.90973 1.02423 1.62236 1.58770 1.01885 1.01012 1.20268 0.94802 0.93939 0.87765 1.20991 1.22581 1.20882 0.89694 0.90168 1.24871 0.95794 0.96588 0.95980 1.69884 1.41495 1.42834 0.99768 0.86918 0.82383 0.83193 0.77607 1.20190 1.21233 1.19317 1.20661 0.96091 0.97762 0.87137 1.24382 0.99849 1.00729 1.01087 1.19923 0.96381 1.02834 0.96485 1.18762 0.98083 0.97177 0.97469 1.20481 0.93677 1.01933 0.98968 1.24179 0.99752 1.04288 1.03474 1.20247 1.02529 0.97251 0.93460 1.84155 1.23650 1.36009 1.21316 0.93209 0.93280 0.92844 0.91751 0.92449 0.93127 0.91058 0.89563 0.92038 0.98479 0.96075 0.92711 0.94260 0.89633 0.84390 0.91391 0.91972 0.91640 0.91331 0.91677 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.16 -2.70 4.57 -26.73 -0.12 -2.82 16 4 C 0.06 1.13 4.96 -3.82 -0.02 1.11 16 5 N -0.52 -10.77 4.65 -237.52 -1.10 -11.87 16 6 C 0.16 3.77 3.66 -4.98 -0.02 3.75 16 7 C -0.50 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.08 2.49 7.70 -52.48 -0.40 2.09 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 11 Si 0.87 21.38 27.45 -169.99 -4.67 16.72 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.32 6.57 56.52 0.37 -5.95 16 15 C 0.11 1.98 5.22 -4.98 -0.03 1.96 16 16 C -0.14 -2.28 5.25 -36.00 -0.19 -2.47 16 17 C -0.13 -1.90 9.85 -41.20 -0.41 -2.31 16 18 C -0.10 -1.36 5.80 -106.25 -0.62 -1.98 16 19 C -0.09 -0.93 9.60 36.00 0.35 -0.59 16 20 C -0.20 -2.56 6.50 -36.00 -0.23 -2.80 16 21 C -0.08 -0.72 9.74 36.01 0.35 -0.37 16 22 S 0.08 1.17 21.86 -107.50 -2.35 -1.18 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.82 6.31 -51.93 -0.33 0.49 16 29 H 0.07 1.37 6.23 -51.93 -0.32 1.05 16 30 H 0.09 1.87 7.16 -51.93 -0.37 1.50 16 31 H 0.06 1.11 6.02 -51.93 -0.31 0.80 16 32 H 0.00 -0.06 5.01 -51.93 -0.26 -0.32 16 33 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 36 H 0.09 1.45 7.87 -51.93 -0.41 1.04 16 37 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.53 7.25 -51.93 -0.38 0.15 16 40 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -30.22 348.02 -10.48 -40.70 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.24 Total: -0.28 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.14 Total: -22.55 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.33 Total: -38.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.35 Total: -1.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.22 -10.48 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233684714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.945 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds