Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35455 * 119.26999 * 2 1 4 4 C 1.35191 * 120.79011 * 179.97438 * 3 2 1 5 5 C 1.41276 * 119.32399 * 359.77235 * 4 3 2 6 6 O 1.22297 * 120.68019 * 180.27799 * 5 4 3 7 7 C 1.41798 * 118.64270 * 0.51099 * 5 4 3 8 8 O 1.36095 * 120.41618 * 179.73475 * 7 5 4 9 9 C 1.42906 * 116.99951 * 184.93582 * 8 7 5 10 10 H 1.08999 * 109.46890 * 36.44292 * 9 8 7 11 11 C 1.50700 * 109.46729 * 276.44303 * 9 8 7 12 12 H 1.07990 * 120.00710 * 354.96408 * 11 9 8 13 13 C 1.37886 * 119.99472 * 174.95990 * 11 9 8 14 14 N 1.31508 * 119.99860 * 348.81316 * 13 11 9 15 15 Si 1.86798 * 119.99874 * 168.81425 * 13 11 9 16 16 H 1.48503 * 109.47033 * 89.99726 * 15 13 11 17 17 H 1.48496 * 109.47033 * 209.99936 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99984 * 15 13 11 19 19 C 1.52997 * 109.46858 * 156.44494 * 9 8 7 20 20 N 1.46898 * 109.47501 * 292.53778 * 19 9 8 21 21 C 1.46905 * 109.47065 * 57.86747 * 20 19 9 22 22 C 1.46894 * 109.47533 * 177.86883 * 20 19 9 23 23 C 1.46899 * 109.47233 * 297.87139 * 20 19 9 24 24 C 1.35435 * 119.16704 * 359.46703 * 7 5 4 25 25 H 1.08999 * 109.46905 * 269.97917 * 1 2 3 26 26 H 1.09000 * 109.46517 * 29.97593 * 1 2 3 27 27 H 1.09000 * 109.46930 * 149.97847 * 1 2 3 28 28 H 1.08002 * 119.60142 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.33687 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00638 * 1.92459 * 14 13 11 31 31 H 1.08999 * 109.47346 * 52.53908 * 19 9 8 32 32 H 1.08998 * 109.47118 * 172.53409 * 19 9 8 33 33 H 1.08998 * 109.46636 * 49.72269 * 21 20 19 34 34 H 1.08995 * 109.47025 * 169.72463 * 21 20 19 35 35 H 1.09004 * 109.46919 * 289.72389 * 21 20 19 36 36 H 1.08999 * 109.47086 * 60.00044 * 22 20 19 37 37 H 1.09000 * 109.47516 * 180.02562 * 22 20 19 38 38 H 1.08999 * 109.47043 * 300.00143 * 22 20 19 39 39 H 1.09001 * 109.47019 * 67.16481 * 23 20 19 40 40 H 1.08994 * 109.47796 * 187.17032 * 23 20 19 41 41 H 1.09007 * 109.46843 * 307.17150 * 23 20 19 42 42 H 1.08001 * 119.69203 * 180.24763 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1816 0.0000 4 6 3.4787 1.2175 0.0005 5 6 4.2031 0.0045 0.0060 6 8 5.4260 0.0081 0.0117 7 6 3.4832 -1.2171 -0.0004 8 8 4.1445 -2.4066 -0.0009 9 6 3.3514 -3.5897 -0.1170 10 1 2.5137 -3.4011 -0.7883 11 6 2.8286 -3.9792 1.2417 12 1 3.1422 -3.4320 2.1183 13 6 1.9498 -5.0345 1.3656 14 7 1.3971 -5.5592 0.2938 15 14 1.5444 -5.7188 3.0558 16 1 0.3707 -4.9992 3.6126 17 1 1.2297 -7.1655 2.9416 18 1 2.7105 -5.5354 3.9568 19 6 4.2092 -4.7255 -0.6783 20 7 4.5711 -4.4242 -2.0697 21 6 5.2863 -3.1421 -2.1230 22 6 5.4367 -5.4898 -2.5923 23 6 3.3523 -4.3392 -2.8853 24 6 2.1292 -1.1853 -0.0004 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.5690 2.1061 0.0004 29 1 3.9993 2.1638 0.0009 30 1 1.6289 -5.2223 -0.5858 31 1 5.1153 -4.8259 -0.0808 32 1 3.6457 -5.6578 -0.6431 33 1 6.0851 -3.1406 -1.3815 34 1 5.7126 -3.0050 -3.1167 35 1 4.5916 -2.3294 -1.9104 36 1 4.9061 -6.4411 -2.5528 37 1 5.7056 -5.2660 -3.6246 38 1 6.3411 -5.5528 -1.9871 39 1 2.7703 -3.4699 -2.5794 40 1 3.6243 -4.2428 -3.9364 41 1 2.7578 -5.2421 -2.7453 42 1 1.5724 -2.1107 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234028557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = 75.311648 kcal Electronic energy + Delta-G solvation = -24041.242266 eV Core-core repulsion = 20720.496554 eV Total energy + Delta-G solvation = -3320.745712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54463 -41.92171 -39.32166 -38.48485 -35.38351 -33.27848 -32.09429 -31.03172 -30.50222 -30.26591 -27.86029 -27.50994 -25.34004 -24.59845 -23.76634 -22.60172 -19.76177 -19.32092 -18.77400 -18.50674 -18.24826 -17.90444 -17.45689 -16.76712 -16.59700 -15.79280 -15.32952 -15.21548 -15.18437 -14.98230 -14.71774 -14.54787 -14.26685 -14.19020 -14.13708 -14.03011 -13.86883 -13.62744 -13.55579 -13.30627 -13.07293 -12.83656 -12.50589 -12.25014 -11.84875 -11.38388 -10.71095 -10.20256 -10.15442 -9.96166 -8.38451 -8.22113 -6.13201 0.18458 0.41947 0.51141 1.62645 2.06033 2.17073 2.22693 2.25251 2.29429 2.40796 2.45010 2.92305 2.99543 3.09565 3.13569 3.31960 3.36880 3.48228 3.54008 3.60517 3.65106 3.66834 3.68872 3.73437 3.87874 3.88630 3.96946 4.08653 4.13311 4.18756 4.33938 4.36638 4.41975 4.69103 4.86926 5.06187 5.35340 5.77422 5.78960 6.02522 6.34853 6.70713 6.92550 7.33383 7.55627 9.04891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.463 5.463 3 C 0.143 3.857 4 C -0.302 4.302 5 C 0.397 3.603 6 O -0.522 6.522 7 C -0.029 4.029 8 O -0.297 6.297 9 C 0.181 3.819 10 H 0.036 0.964 11 C -0.623 4.623 12 H 0.079 0.921 13 C 0.041 3.959 14 N -0.879 5.879 15 Si 1.064 2.936 16 H -0.277 1.277 17 H -0.275 1.275 18 H -0.278 1.278 19 C -0.008 4.008 20 N -0.272 5.272 21 C -0.037 4.037 22 C -0.043 4.043 23 C -0.044 4.044 24 C 0.029 3.971 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.261 0.739 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 1.450 -12.626 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.153 5.153 3 C 0.013 3.987 4 C -0.328 4.328 5 C 0.289 3.711 6 O -0.409 6.409 7 C -0.079 4.079 8 O -0.210 6.210 9 C 0.125 3.875 10 H 0.053 0.947 11 C -0.660 4.660 12 H 0.097 0.903 13 C -0.166 4.166 14 N -0.511 5.511 15 Si 0.889 3.111 16 H -0.203 1.203 17 H -0.199 1.199 18 H -0.204 1.204 19 C -0.127 4.127 20 N 0.070 4.930 21 C -0.178 4.178 22 C -0.185 4.185 23 C -0.185 4.185 24 C -0.095 4.095 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.181 0.819 29 H 0.170 0.830 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.195 0.195 -11.830 11.892 hybrid contribution 0.459 0.980 -0.604 1.239 sum 1.654 1.175 -12.434 12.599 Atomic orbital electron populations 1.22398 0.76202 1.05059 1.04480 1.42803 1.08252 1.04059 1.60166 1.21879 0.94099 0.88943 0.93755 1.22051 0.93013 1.00504 1.17211 1.16914 0.89539 0.86707 0.77910 1.90822 1.14251 1.89596 1.46187 1.20197 0.90406 0.88462 1.08813 1.86141 1.34982 1.11403 1.88517 1.20453 0.88069 0.79782 0.99148 0.94658 1.22309 1.31105 1.20368 0.92259 0.90259 1.26137 0.91546 0.93187 1.05767 1.71171 1.38530 1.42877 0.98551 0.83505 0.77408 0.77523 0.72695 1.20315 1.19942 1.20355 1.25027 1.05775 1.05780 0.76144 1.46371 1.14661 1.15198 1.16818 1.24309 1.02131 0.84548 1.06793 1.24062 0.97965 0.92405 1.04041 1.24077 0.87455 1.09164 0.97836 1.22034 0.93558 0.89962 1.03981 0.90081 0.89207 0.89250 0.81859 0.83000 0.92851 0.85718 0.84384 0.86010 0.87879 0.85539 0.86580 0.86893 0.86513 0.86790 0.86838 0.86118 0.80757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.25 10.58 59.85 0.63 0.38 16 2 N -0.46 0.46 3.01 -124.66 -0.37 0.09 16 3 C 0.14 -0.18 10.25 -17.04 -0.17 -0.36 16 4 C -0.30 -0.55 10.00 -39.51 -0.39 -0.95 16 5 C 0.40 2.02 6.77 -37.07 -0.25 1.77 16 6 O -0.52 -4.58 17.72 -10.93 -0.19 -4.77 16 7 C -0.03 -0.09 5.91 -39.22 -0.23 -0.33 16 8 O -0.30 -0.83 6.59 -35.62 -0.23 -1.06 16 9 C 0.18 0.25 0.84 -27.88 -0.02 0.22 16 10 H 0.04 0.01 3.69 -51.93 -0.19 -0.18 16 11 C -0.62 -4.32 7.76 -34.44 -0.27 -4.58 16 12 H 0.08 0.80 7.84 -52.49 -0.41 0.39 16 13 C 0.04 0.34 5.10 -17.82 -0.09 0.25 16 14 N -0.88 -7.12 12.99 55.43 0.72 -6.40 16 15 Si 1.06 8.43 29.92 -169.99 -5.09 3.34 16 16 H -0.28 -2.34 7.11 56.52 0.40 -1.94 16 17 H -0.27 -2.41 7.11 56.52 0.40 -2.00 16 18 H -0.28 -2.27 7.11 56.52 0.40 -1.87 16 19 C -0.01 0.03 3.48 -3.83 -0.01 0.01 16 20 N -0.27 2.37 0.05 -395.63 -0.02 2.35 16 21 C -0.04 0.27 6.87 60.07 0.41 0.68 16 22 C -0.04 0.50 7.98 60.06 0.48 0.98 16 23 C -0.04 0.42 7.65 60.06 0.46 0.88 16 24 C 0.03 0.04 8.97 -16.76 -0.15 -0.11 16 25 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 26 H 0.09 -0.58 7.99 -51.93 -0.41 -1.00 16 27 H 0.09 -0.41 8.00 -51.93 -0.42 -0.82 16 28 H 0.16 -0.84 8.02 -52.49 -0.42 -1.26 16 29 H 0.15 0.14 8.06 -52.48 -0.42 -0.29 16 30 H 0.26 1.31 6.25 -40.82 -0.26 1.05 16 31 H 0.12 -0.38 8.09 -51.93 -0.42 -0.80 16 32 H 0.14 -0.28 6.38 -51.93 -0.33 -0.62 16 33 H 0.12 -0.70 7.89 -51.93 -0.41 -1.11 16 34 H 0.10 -1.06 7.98 -51.93 -0.41 -1.47 16 35 H 0.13 -0.56 5.10 -51.93 -0.27 -0.83 16 36 H 0.12 -1.37 8.14 -51.93 -0.42 -1.79 16 37 H 0.11 -1.53 8.02 -51.93 -0.42 -1.95 16 38 H 0.12 -1.36 8.14 -51.93 -0.42 -1.78 16 39 H 0.11 -0.92 6.21 -51.93 -0.32 -1.25 16 40 H 0.11 -1.40 8.05 -51.93 -0.42 -1.82 16 41 H 0.12 -1.10 8.02 -51.92 -0.42 -1.51 16 42 H 0.18 0.32 5.55 -52.49 -0.29 0.03 16 LS Contribution 329.30 15.07 4.96 4.96 Total: 0.00 -20.07 329.30 -6.14 -26.21 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -6.30 Total: -23.56 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.39 Total: -1.16 kcal Atomic # 7 Polarization: -4.28 SS G_CDS: 0.33 Total: -3.96 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.43 Total: -5.84 kcal Atomic # 14 Polarization: 8.43 SS G_CDS: -5.09 Total: 3.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -20.07 -6.14 -26.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234028557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.519 kcal (2) G-P(sol) polarization free energy of solvation -20.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds