Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35455 * 119.26999 * 2 1 4 4 C 1.35191 * 120.79011 * 179.97438 * 3 2 1 5 5 C 1.41276 * 119.32399 * 359.77235 * 4 3 2 6 6 O 1.22297 * 120.68019 * 180.27799 * 5 4 3 7 7 C 1.41798 * 118.64270 * 0.51099 * 5 4 3 8 8 O 1.36095 * 120.41618 * 179.73475 * 7 5 4 9 9 C 1.42906 * 116.99951 * 184.93582 * 8 7 5 10 10 H 1.08999 * 109.46890 * 36.44292 * 9 8 7 11 11 C 1.50700 * 109.46729 * 276.44303 * 9 8 7 12 12 H 1.07990 * 120.00710 * 354.96408 * 11 9 8 13 13 C 1.37886 * 119.99472 * 174.95990 * 11 9 8 14 14 N 1.31508 * 119.99860 * 348.81316 * 13 11 9 15 15 Si 1.86798 * 119.99874 * 168.81425 * 13 11 9 16 16 H 1.48503 * 109.47033 * 89.99726 * 15 13 11 17 17 H 1.48496 * 109.47033 * 209.99936 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99984 * 15 13 11 19 19 C 1.52997 * 109.46858 * 156.44494 * 9 8 7 20 20 N 1.46898 * 109.47501 * 292.53778 * 19 9 8 21 21 C 1.46905 * 109.47065 * 57.86747 * 20 19 9 22 22 C 1.46894 * 109.47533 * 177.86883 * 20 19 9 23 23 C 1.46899 * 109.47233 * 297.87139 * 20 19 9 24 24 C 1.35435 * 119.16704 * 359.46703 * 7 5 4 25 25 H 1.08999 * 109.46905 * 269.97917 * 1 2 3 26 26 H 1.09000 * 109.46517 * 29.97593 * 1 2 3 27 27 H 1.09000 * 109.46930 * 149.97847 * 1 2 3 28 28 H 1.08002 * 119.60142 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.33687 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00638 * 1.92459 * 14 13 11 31 31 H 1.08999 * 109.47346 * 52.53908 * 19 9 8 32 32 H 1.08998 * 109.47118 * 172.53409 * 19 9 8 33 33 H 1.08998 * 109.46636 * 49.72269 * 21 20 19 34 34 H 1.08995 * 109.47025 * 169.72463 * 21 20 19 35 35 H 1.09004 * 109.46919 * 289.72389 * 21 20 19 36 36 H 1.08999 * 109.47086 * 60.00044 * 22 20 19 37 37 H 1.09000 * 109.47516 * 180.02562 * 22 20 19 38 38 H 1.08999 * 109.47043 * 300.00143 * 22 20 19 39 39 H 1.09001 * 109.47019 * 67.16481 * 23 20 19 40 40 H 1.08994 * 109.47796 * 187.17032 * 23 20 19 41 41 H 1.09007 * 109.46843 * 307.17150 * 23 20 19 42 42 H 1.08001 * 119.69203 * 180.24763 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1816 0.0000 4 6 3.4787 1.2175 0.0005 5 6 4.2031 0.0045 0.0060 6 8 5.4260 0.0081 0.0117 7 6 3.4832 -1.2171 -0.0004 8 8 4.1445 -2.4066 -0.0009 9 6 3.3514 -3.5897 -0.1170 10 1 2.5137 -3.4011 -0.7883 11 6 2.8286 -3.9792 1.2417 12 1 3.1422 -3.4320 2.1183 13 6 1.9498 -5.0345 1.3656 14 7 1.3971 -5.5592 0.2938 15 14 1.5444 -5.7188 3.0558 16 1 0.3707 -4.9992 3.6126 17 1 1.2297 -7.1655 2.9416 18 1 2.7105 -5.5354 3.9568 19 6 4.2092 -4.7255 -0.6783 20 7 4.5711 -4.4242 -2.0697 21 6 5.2863 -3.1421 -2.1230 22 6 5.4367 -5.4898 -2.5923 23 6 3.3523 -4.3392 -2.8853 24 6 2.1292 -1.1853 -0.0004 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.5690 2.1061 0.0004 29 1 3.9993 2.1638 0.0009 30 1 1.6289 -5.2223 -0.5858 31 1 5.1153 -4.8259 -0.0808 32 1 3.6457 -5.6578 -0.6431 33 1 6.0851 -3.1406 -1.3815 34 1 5.7126 -3.0050 -3.1167 35 1 4.5916 -2.3294 -1.9104 36 1 4.9061 -6.4411 -2.5528 37 1 5.7056 -5.2660 -3.6246 38 1 6.3411 -5.5528 -1.9871 39 1 2.7703 -3.4699 -2.5794 40 1 3.6243 -4.2428 -3.9364 41 1 2.7578 -5.2421 -2.7453 42 1 1.5724 -2.1107 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234028557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = 68.718008 kcal Electronic energy + Delta-G solvation = -24041.528188 eV Core-core repulsion = 20720.496554 eV Total energy + Delta-G solvation = -3321.031634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.09928 -41.96589 -39.38367 -38.74281 -35.80034 -33.34824 -32.17399 -31.04553 -29.74457 -29.61617 -27.84973 -27.50912 -25.44920 -24.37568 -23.86331 -22.57832 -20.02907 -19.25793 -18.64554 -18.06671 -18.00648 -17.73023 -17.29500 -16.82652 -16.68373 -15.85985 -15.79865 -15.39890 -15.12250 -14.77183 -14.52884 -14.28710 -14.12672 -13.79286 -13.59253 -13.46802 -13.37002 -13.31457 -13.25324 -13.22707 -13.19040 -12.85231 -12.79734 -12.50348 -12.12717 -12.04704 -11.16274 -10.66513 -10.50491 -10.13755 -8.87266 -8.51394 -6.67833 0.26363 0.38629 0.78713 1.47652 1.59534 1.65549 1.71651 2.18275 2.35319 2.65424 2.72121 2.86240 2.90667 3.01810 3.51674 3.71447 3.77364 3.84457 3.89327 4.03295 4.08967 4.11587 4.15360 4.22010 4.31421 4.40950 4.42649 4.45629 4.46647 4.56225 4.67391 4.70994 4.76471 4.78536 4.80973 4.97108 5.25182 5.43438 5.74840 5.91252 5.95507 6.35673 6.41180 6.97899 7.11428 8.54457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.454 5.454 3 C 0.171 3.829 4 C -0.330 4.330 5 C 0.375 3.625 6 O -0.586 6.586 7 C -0.049 4.049 8 O -0.305 6.305 9 C 0.183 3.817 10 H 0.051 0.949 11 C -0.629 4.629 12 H 0.038 0.962 13 C 0.028 3.972 14 N -0.901 5.901 15 Si 1.079 2.921 16 H -0.285 1.285 17 H -0.284 1.284 18 H -0.288 1.288 19 C 0.010 3.990 20 N -0.257 5.257 21 C -0.034 4.034 22 C -0.046 4.046 23 C -0.050 4.050 24 C 0.042 3.958 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.216 0.784 29 H 0.156 0.844 30 H 0.277 0.723 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 1.880 -15.138 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.141 5.141 3 C 0.039 3.961 4 C -0.355 4.355 5 C 0.272 3.728 6 O -0.479 6.479 7 C -0.099 4.099 8 O -0.219 6.219 9 C 0.127 3.873 10 H 0.068 0.932 11 C -0.667 4.667 12 H 0.057 0.943 13 C -0.178 4.178 14 N -0.536 5.536 15 Si 0.906 3.094 16 H -0.212 1.212 17 H -0.209 1.209 18 H -0.214 1.214 19 C -0.112 4.112 20 N 0.085 4.915 21 C -0.175 4.175 22 C -0.186 4.186 23 C -0.190 4.190 24 C -0.084 4.084 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.113 0.887 28 H 0.232 0.768 29 H 0.174 0.826 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.161 0.839 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.171 0.829 41 H 0.138 0.862 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.074 0.623 -14.348 14.362 hybrid contribution 0.706 0.911 0.169 1.165 sum 0.632 1.534 -14.179 14.275 Atomic orbital electron populations 1.22751 0.73583 1.07249 1.05348 1.43247 1.09892 1.03488 1.57436 1.22502 0.93286 0.90217 0.90054 1.22076 0.94486 0.99449 1.19504 1.17478 0.89232 0.88360 0.77693 1.90772 1.16263 1.90342 1.50484 1.20242 0.91105 0.88390 1.10202 1.86175 1.35323 1.11619 1.88801 1.20369 0.89528 0.80484 0.96947 0.93201 1.22286 1.31280 1.19534 0.93636 0.94331 1.26024 0.92172 0.93786 1.05805 1.71090 1.39411 1.43819 0.99291 0.83277 0.76478 0.76643 0.73015 1.21179 1.20909 1.21414 1.24230 1.04730 1.02586 0.79620 1.45998 1.15706 1.15733 1.14080 1.24208 1.00822 0.84046 1.08465 1.24308 0.97290 0.91402 1.05639 1.24254 0.86857 1.08302 0.99637 1.21995 0.92824 0.90940 1.02688 0.89798 0.85595 0.88702 0.76774 0.82646 0.91146 0.86183 0.84938 0.87975 0.83885 0.88487 0.85868 0.83559 0.86451 0.88498 0.82856 0.86185 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.55 10.58 127.77 1.35 0.80 16 2 N -0.45 1.45 3.01 -548.30 -1.65 -0.20 16 3 C 0.17 -0.72 10.25 83.43 0.86 0.14 16 4 C -0.33 -1.52 10.00 22.31 0.22 -1.30 16 5 C 0.37 4.92 6.77 23.90 0.16 5.08 16 6 O -0.59 -12.83 17.72 8.60 0.15 -12.68 16 7 C -0.05 -0.45 5.91 22.50 0.13 -0.32 16 8 O -0.31 -2.61 6.59 -79.74 -0.53 -3.14 16 9 C 0.18 0.85 0.84 29.85 0.03 0.87 16 10 H 0.05 0.09 3.69 -2.39 -0.01 0.08 16 11 C -0.63 -10.42 7.76 25.60 0.20 -10.22 16 12 H 0.04 0.94 7.84 -2.92 -0.02 0.91 16 13 C 0.03 0.52 5.10 84.66 0.43 0.95 16 14 N -0.90 -15.43 12.99 21.45 0.28 -15.15 16 15 Si 1.08 19.45 29.92 68.60 2.05 21.51 16 16 H -0.29 -5.39 7.11 99.48 0.71 -4.68 16 17 H -0.28 -5.47 7.11 99.48 0.71 -4.76 16 18 H -0.29 -5.49 7.11 99.48 0.71 -4.78 16 19 C 0.01 -0.05 3.48 86.30 0.30 0.25 16 20 N -0.26 4.59 0.05 ******* -0.07 4.53 16 21 C -0.03 0.49 6.87 127.69 0.88 1.36 16 22 C -0.05 1.15 7.98 127.69 1.02 2.17 16 23 C -0.05 1.01 7.65 127.69 0.98 1.98 16 24 C 0.04 0.15 8.97 83.42 0.75 0.90 16 25 H 0.08 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.13 -2.19 7.99 -2.39 -0.02 -2.21 16 27 H 0.09 -1.06 8.00 -2.39 -0.02 -1.07 16 28 H 0.22 -3.10 8.02 -2.91 -0.02 -3.13 16 29 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 30 H 0.28 2.91 6.25 -92.71 -0.58 2.33 16 31 H 0.12 -0.51 8.09 -2.39 -0.02 -0.53 16 32 H 0.13 -0.46 6.38 -2.39 -0.02 -0.47 16 33 H 0.10 -0.98 7.89 -2.39 -0.02 -1.00 16 34 H 0.14 -3.18 7.98 -2.39 -0.02 -3.20 16 35 H 0.10 -0.69 5.10 -2.38 -0.01 -0.70 16 36 H 0.12 -3.13 8.14 -2.39 -0.02 -3.15 16 37 H 0.15 -4.49 8.02 -2.39 -0.02 -4.51 16 38 H 0.12 -2.85 8.14 -2.39 -0.02 -2.86 16 39 H 0.10 -1.58 6.21 -2.39 -0.01 -1.60 16 40 H 0.15 -4.29 8.05 -2.39 -0.02 -4.31 16 41 H 0.12 -2.33 8.02 -2.38 -0.02 -2.35 16 42 H 0.17 0.79 5.55 -2.91 -0.02 0.78 16 Total: 0.00 -52.83 329.30 8.74 -44.09 By element: Atomic # 1 Polarization: -42.82 SS G_CDS: 1.19 Total: -41.63 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 7.30 Total: 2.68 kcal Atomic # 7 Polarization: -9.39 SS G_CDS: -1.44 Total: -10.83 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.37 Total: -15.82 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: 2.05 Total: 21.51 kcal Total: -52.83 8.74 -44.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234028557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.809 kcal (2) G-P(sol) polarization free energy of solvation -52.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds