Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39037 * 120.47820 * 2 1 4 4 O 1.35742 * 120.81129 * 0.03097 * 3 2 1 5 5 C 1.39397 * 118.37062 * 180.28004 * 3 2 1 6 6 C 1.37861 * 119.21510 * 359.73002 * 5 3 2 7 7 N 1.32020 * 120.89235 * 0.02562 * 6 5 3 8 8 C 1.32363 * 121.78478 * 359.97438 * 7 6 5 9 9 O 1.35681 * 119.65594 * 180.02562 * 8 7 6 10 10 C 1.42910 * 117.00096 * 3.50380 * 9 8 7 11 11 H 1.09002 * 109.46744 * 328.95089 * 10 9 8 12 12 C 1.50700 * 109.47133 * 208.95468 * 10 9 8 13 13 H 1.07998 * 119.99825 * 356.95959 * 12 10 9 14 14 C 1.37880 * 119.99824 * 176.96466 * 12 10 9 15 15 N 1.31515 * 119.99605 * 351.52333 * 14 12 10 16 16 Si 1.86796 * 119.99974 * 171.25107 * 14 12 10 17 17 H 1.48505 * 109.46978 * 59.99949 * 16 14 12 18 18 H 1.48496 * 109.47090 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47095 * 300.00032 * 16 14 12 20 20 C 1.52993 * 109.47096 * 88.95082 * 10 9 8 21 21 N 1.46906 * 109.47460 * 51.72213 * 20 10 9 22 22 C 1.46898 * 109.46815 * 54.37926 * 21 20 10 23 23 C 1.46896 * 109.47148 * 174.37842 * 21 20 10 24 24 C 1.46898 * 109.46800 * 294.38051 * 21 20 10 25 25 H 1.08996 * 109.47142 * 270.24970 * 1 2 3 26 26 H 1.08998 * 109.46706 * 30.25535 * 1 2 3 27 27 H 1.09000 * 109.47088 * 150.24717 * 1 2 3 28 28 H 0.96693 * 114.00584 * 270.24787 * 4 3 2 29 29 H 1.08005 * 120.38965 * 179.75345 * 5 3 2 30 30 H 1.08004 * 119.55293 * 179.97438 * 6 5 3 31 31 H 0.96995 * 120.00268 * 1.66902 * 15 14 12 32 32 H 1.08996 * 109.47267 * 171.72249 * 20 10 9 33 33 H 1.09004 * 109.47439 * 291.72060 * 20 10 9 34 34 H 1.08997 * 109.47144 * 42.84059 * 22 21 20 35 35 H 1.08999 * 109.47472 * 162.84289 * 22 21 20 36 36 H 1.09005 * 109.47011 * 282.84076 * 22 21 20 37 37 H 1.09002 * 109.47296 * 60.00112 * 23 21 20 38 38 H 1.09005 * 109.46790 * 179.97438 * 23 21 20 39 39 H 1.08997 * 109.47615 * 299.99724 * 23 21 20 40 40 H 1.09001 * 109.47290 * 78.12944 * 24 21 20 41 41 H 1.08996 * 109.47022 * 198.11997 * 24 21 20 42 42 H 1.09001 * 109.47456 * 318.12593 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2122 1.1983 0.0000 4 8 1.5601 2.3888 0.0006 5 6 3.6052 1.1470 -0.0060 6 6 4.2334 -0.0802 -0.0060 7 7 3.5338 -1.1998 -0.0010 8 6 2.2102 -1.1948 0.0048 9 8 1.5345 -2.3713 0.0104 10 6 2.3138 -3.5668 0.0875 11 1 3.2744 -3.4064 -0.4019 12 6 1.5808 -4.6895 -0.6005 13 1 0.5952 -4.5208 -1.0084 14 6 2.1686 -5.9320 -0.7091 15 7 3.4271 -6.0964 -0.3647 16 14 1.1750 -7.3834 -1.3380 17 1 0.6914 -7.0940 -2.7119 18 1 2.0310 -8.5967 -1.3604 19 1 0.0130 -7.6132 -0.4423 20 6 2.5438 -3.9318 1.5553 21 7 1.2562 -3.9538 2.2621 22 6 0.3284 -4.8518 1.5617 23 6 1.4596 -4.4340 3.6354 24 6 0.6931 -2.5974 2.2960 25 1 -0.3633 0.0045 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5100 28 1 1.3674 2.7322 -0.8825 29 1 4.1855 2.0579 -0.0102 30 1 5.3124 -0.1263 -0.0111 31 1 3.9349 -5.3492 -0.0116 32 1 3.0087 -4.9158 1.6165 33 1 3.1984 -3.1916 2.0156 34 1 0.8545 -5.7598 1.2670 35 1 -0.4978 -5.1095 2.2243 36 1 -0.0599 -4.3526 0.6739 37 1 2.1480 -3.7677 4.1552 38 1 0.5042 -4.4499 4.1600 39 1 1.8774 -5.4404 3.6103 40 1 0.2474 -2.3648 1.3289 41 1 -0.0711 -2.5406 3.0711 42 1 1.4849 -1.8805 2.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234181443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = 67.805358 kcal Electronic energy + Delta-G solvation = -24231.817316 eV Core-core repulsion = 20910.746107 eV Total energy + Delta-G solvation = -3321.071209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.49652 -41.75251 -39.48283 -37.96451 -35.65780 -34.01073 -31.87402 -31.08798 -30.31134 -30.13543 -28.27809 -27.51224 -24.95724 -24.44683 -23.41191 -22.81297 -20.26761 -19.46521 -18.82805 -18.54269 -18.27759 -17.86702 -17.25989 -16.69943 -16.45370 -15.84339 -15.48102 -15.12409 -15.00811 -14.96806 -14.63505 -14.41318 -14.30329 -14.08843 -13.99430 -13.82874 -13.77026 -13.55025 -13.27883 -13.19832 -13.00260 -12.42981 -12.19788 -11.93236 -11.88953 -11.45741 -10.72622 -10.61506 -10.42740 -10.09647 -9.46933 -8.25175 -6.09314 -0.05487 0.08179 0.44703 1.92313 1.99848 2.21194 2.31901 2.42151 2.45244 2.48920 2.60312 2.91914 2.98282 3.21645 3.25787 3.34068 3.39799 3.54980 3.68987 3.71853 3.75816 3.81063 3.83354 3.88121 4.00004 4.01502 4.20294 4.30351 4.37827 4.41646 4.50063 4.53659 4.78340 4.81609 4.94859 5.06500 5.10828 5.28264 5.76540 6.18928 6.34589 6.60677 6.81244 6.84131 7.53861 9.07468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.194 4.194 3 C 0.182 3.818 4 O -0.488 6.488 5 C -0.235 4.235 6 C 0.152 3.848 7 N -0.539 5.539 8 C 0.330 3.670 9 O -0.298 6.298 10 C 0.189 3.811 11 H 0.087 0.913 12 C -0.632 4.632 13 H 0.080 0.920 14 C 0.035 3.965 15 N -0.869 5.869 16 Si 1.059 2.941 17 H -0.275 1.275 18 H -0.271 1.271 19 H -0.277 1.277 20 C -0.028 4.028 21 N -0.250 5.250 22 C -0.028 4.028 23 C -0.044 4.044 24 C -0.047 4.047 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.401 0.599 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.274 0.726 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 6.734 9.843 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.197 4.197 3 C 0.129 3.871 4 O -0.299 6.299 5 C -0.256 4.256 6 C -0.003 4.003 7 N -0.263 5.263 8 C 0.151 3.849 9 O -0.206 6.206 10 C 0.133 3.867 11 H 0.105 0.895 12 C -0.669 4.669 13 H 0.098 0.902 14 C -0.174 4.174 15 N -0.501 5.501 16 Si 0.883 3.117 17 H -0.200 1.200 18 H -0.196 1.196 19 H -0.203 1.203 20 C -0.150 4.150 21 N 0.092 4.908 22 C -0.168 4.168 23 C -0.186 4.186 24 C -0.189 4.189 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.259 0.741 29 H 0.161 0.839 30 H 0.182 0.818 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.102 0.898 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.124 4.197 10.069 12.052 hybrid contribution 0.050 2.631 -0.209 2.640 sum -5.074 6.829 9.860 13.023 Atomic orbital electron populations 1.20494 0.89189 1.03521 1.02316 1.20222 0.98269 0.90456 1.10756 1.18333 0.89698 0.84686 0.94343 1.84736 1.77669 1.33389 1.34131 1.22334 0.94302 1.00527 1.08445 1.22353 1.00132 0.86038 0.91818 1.67414 1.06705 1.32611 1.19546 1.19571 0.87342 0.86564 0.91406 1.86325 1.35602 1.12484 1.86151 1.20581 0.96980 0.80489 0.88679 0.89543 1.21894 1.06503 0.94664 1.43808 0.90157 1.26077 0.96206 1.00569 0.94555 1.71005 1.06752 1.36228 1.36098 0.83584 0.74910 0.75344 0.77858 1.20037 1.19564 1.20310 1.24833 0.82406 1.08345 0.99372 1.45742 1.16437 1.14832 1.13814 1.24744 0.93576 0.98104 1.00363 1.24069 1.07306 1.05382 0.81803 1.24497 1.02899 0.81858 1.09612 0.91385 0.91190 0.90551 0.74065 0.83924 0.81842 0.91380 0.84640 0.88414 0.85397 0.89795 0.84188 0.87389 0.86893 0.86530 0.83883 0.87862 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.22 8.90 36.00 0.32 0.54 16 2 C -0.19 0.06 5.92 -104.18 -0.62 -0.56 16 3 C 0.18 -0.07 6.74 -38.85 -0.26 -0.33 16 4 O -0.49 0.75 12.70 -18.93 -0.24 0.51 16 5 C -0.24 0.16 10.07 -39.29 -0.40 -0.23 16 6 C 0.15 0.00 11.17 -17.61 -0.20 -0.20 16 7 N -0.54 -0.96 8.64 -13.41 -0.12 -1.08 16 8 C 0.33 0.30 6.50 -17.17 -0.11 0.19 16 9 O -0.30 -0.15 4.86 -18.74 -0.09 -0.24 16 10 C 0.19 0.39 1.73 -27.89 -0.05 0.35 16 11 H 0.09 0.51 6.44 -51.93 -0.33 0.18 16 12 C -0.63 -3.03 5.27 -34.44 -0.18 -3.21 16 13 H 0.08 0.42 6.96 -52.49 -0.37 0.05 16 14 C 0.04 0.25 4.05 -17.82 -0.07 0.18 16 15 N -0.87 -8.17 12.91 55.43 0.72 -7.46 16 16 Si 1.06 6.43 29.39 -169.99 -5.00 1.43 16 17 H -0.28 -1.98 7.11 56.52 0.40 -1.58 16 18 H -0.27 -2.22 7.11 56.52 0.40 -1.82 16 19 H -0.28 -1.05 7.11 56.52 0.40 -0.65 16 20 C -0.03 0.07 3.85 -3.82 -0.01 0.05 16 21 N -0.25 1.70 0.05 -395.63 -0.02 1.68 16 22 C -0.03 0.14 6.78 60.06 0.41 0.55 16 23 C -0.04 0.43 7.88 60.06 0.47 0.90 16 24 C -0.05 0.35 7.00 60.06 0.42 0.77 16 25 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 26 H 0.07 -0.18 7.62 -51.93 -0.40 -0.57 16 27 H 0.08 -0.14 7.55 -51.93 -0.39 -0.53 16 28 H 0.40 -2.28 9.06 45.56 0.41 -1.87 16 29 H 0.14 -0.33 8.06 -52.48 -0.42 -0.75 16 30 H 0.16 -0.37 8.06 -52.48 -0.42 -0.79 16 31 H 0.27 2.32 6.02 -40.82 -0.25 2.07 16 32 H 0.14 -0.09 6.01 -51.93 -0.31 -0.41 16 33 H 0.10 -0.33 7.87 -51.93 -0.41 -0.74 16 34 H 0.13 -0.30 5.37 -51.93 -0.28 -0.57 16 35 H 0.08 -0.70 7.85 -51.93 -0.41 -1.11 16 36 H 0.14 -0.47 4.91 -51.93 -0.26 -0.73 16 37 H 0.11 -1.15 8.14 -51.93 -0.42 -1.58 16 38 H 0.11 -1.35 7.89 -51.93 -0.41 -1.76 16 39 H 0.12 -1.10 8.11 -51.93 -0.42 -1.52 16 40 H 0.14 -0.80 4.31 -51.93 -0.22 -1.03 16 41 H 0.10 -1.07 7.83 -51.93 -0.41 -1.48 16 42 H 0.10 -0.66 7.20 -51.93 -0.37 -1.03 16 LS Contribution 319.10 15.07 4.81 4.81 Total: 0.00 -14.72 319.10 -5.52 -20.24 By element: Atomic # 1 Polarization: -13.59 SS G_CDS: -5.30 Total: -18.89 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.28 Total: -1.00 kcal Atomic # 7 Polarization: -7.44 SS G_CDS: 0.58 Total: -6.86 kcal Atomic # 8 Polarization: 0.60 SS G_CDS: -0.33 Total: 0.27 kcal Atomic # 14 Polarization: 6.43 SS G_CDS: -5.00 Total: 1.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -14.72 -5.52 -20.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234181443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.041 kcal (2) G-P(sol) polarization free energy of solvation -14.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds