Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46881 * 2 1 4 4 C 1.35955 * 117.00099 * 180.02562 * 3 2 1 5 5 C 1.38663 * 120.06318 * 359.97438 * 4 3 2 6 6 C 1.38183 * 119.97026 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.94993 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.47404 * 84.40717 * 7 6 5 9 9 C 1.46903 * 111.00066 * 199.76782 * 8 7 6 10 10 C 1.53000 * 109.47474 * 75.75326 * 9 8 7 11 11 C 1.46891 * 111.00247 * 75.81240 * 8 7 6 12 12 C 1.50703 * 109.47667 * 189.99936 * 11 8 7 13 13 H 1.08003 * 119.99376 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00204 * 180.02562 * 12 11 8 15 15 N 1.31517 * 119.99559 * 179.97438 * 14 12 11 16 16 Si 1.86789 * 120.00278 * 359.97438 * 14 12 11 17 17 H 1.48510 * 109.46847 * 90.00135 * 16 14 12 18 18 H 1.48499 * 109.47604 * 209.99914 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00556 * 16 14 12 20 20 C 1.38257 * 120.09282 * 359.97438 * 6 5 4 21 21 C 1.38258 * 120.13111 * 0.02562 * 20 6 5 22 22 C 1.38328 * 120.02696 * 359.97438 * 21 20 6 23 23 F 1.35103 * 120.04865 * 180.27748 * 22 21 20 24 24 H 1.08999 * 109.46505 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47070 * 299.99859 * 1 2 3 26 26 H 1.09001 * 109.47096 * 60.00151 * 1 2 3 27 27 H 1.09002 * 109.47070 * 240.00141 * 2 1 3 28 28 H 1.08990 * 109.47537 * 119.99690 * 2 1 3 29 29 H 1.07999 * 120.01145 * 359.97438 * 5 4 3 30 30 H 1.09003 * 109.46821 * 204.40830 * 7 6 5 31 31 H 1.09004 * 109.47105 * 324.40336 * 7 6 5 32 32 H 1.09002 * 109.47286 * 195.76075 * 9 8 7 33 33 H 1.09003 * 109.47068 * 315.75513 * 9 8 7 34 34 H 1.08998 * 109.47561 * 294.86432 * 10 9 8 35 35 H 1.09010 * 109.46504 * 54.86151 * 10 9 8 36 36 H 1.08998 * 109.47338 * 174.85580 * 10 9 8 37 37 H 1.09005 * 109.46944 * 310.00122 * 11 8 7 38 38 H 1.09007 * 109.47265 * 69.99854 * 11 8 7 39 39 H 0.96999 * 119.99466 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.92925 * 180.02562 * 20 6 5 41 41 H 1.07997 * 119.98305 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.2001 0.4268 -0.0005 6 6 5.5697 0.6102 -0.0005 7 6 6.4887 -0.5842 -0.0011 8 7 6.6802 -1.0540 -1.3796 9 6 7.1583 -2.4429 -1.4008 10 6 5.9972 -3.3870 -1.0821 11 6 7.5957 -0.1710 -2.1144 12 6 7.5781 -0.5339 -3.5770 13 1 6.9493 -1.3398 -3.9258 14 6 8.3647 0.1628 -4.4697 15 7 8.3497 -0.1544 -5.7459 16 14 9.4516 1.5570 -3.8665 17 1 10.7848 1.0194 -3.4936 18 1 9.6085 2.5649 -4.9457 19 1 8.8257 2.1950 -2.6805 20 6 6.0981 1.8878 -0.0011 21 6 5.2583 2.9861 -0.0011 22 6 3.8865 2.8086 -0.0011 23 9 3.0655 3.8815 -0.0068 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.7887 -0.5717 0.0003 30 1 7.4519 -0.3016 0.4236 31 1 6.0480 -1.3820 0.5968 32 1 7.5550 -2.6756 -2.3890 33 1 7.9436 -2.5683 -0.6553 34 1 5.6599 -3.2159 -0.0598 35 1 5.1751 -3.1976 -1.7724 36 1 6.3293 -4.4198 -1.1872 37 1 7.2772 0.8644 -1.9931 38 1 8.6062 -0.2885 -1.7230 39 1 8.9028 0.3360 -6.3740 40 1 7.1690 2.0281 -0.0015 41 1 5.6736 3.9831 -0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235799539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -58.762680 kcal Electronic energy + Delta-G solvation = -22337.468306 eV Core-core repulsion = 18939.218561 eV Total energy + Delta-G solvation = -3398.249745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.57047 -39.99770 -38.08835 -36.50486 -32.63276 -32.11599 -31.34259 -30.21001 -29.38237 -27.43532 -24.89079 -23.97150 -22.23295 -21.74735 -21.47198 -19.81800 -18.02263 -17.06425 -16.72452 -16.55039 -16.29047 -15.17473 -15.12683 -14.65340 -14.46751 -14.25598 -13.90523 -13.71624 -13.29012 -13.11839 -13.03552 -12.74442 -12.53814 -12.39167 -11.90775 -11.77890 -11.61245 -11.43629 -11.21178 -11.12649 -10.86214 -10.74752 -10.72176 -10.43021 -10.05067 -9.83923 -9.27256 -8.65078 -8.57997 -7.98658 -7.46228 -6.06392 -4.03332 1.31071 1.45626 3.10468 3.26358 3.34925 3.35498 3.71328 4.40621 4.41170 4.73939 4.79990 4.82844 4.95226 5.04717 5.14405 5.24571 5.28180 5.36844 5.46122 5.55966 5.66516 5.66838 5.72822 5.82254 5.89714 5.91613 6.01508 6.14423 6.19640 6.25852 6.38008 6.61284 6.64396 6.73046 6.81244 6.87415 6.96057 7.40772 7.59332 7.86278 8.00009 8.63427 9.02043 9.55431 11.06781 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.005512 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.821238 B = 5078.786621 C = 5969.434457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.312 6.312 4 C 0.095 3.905 5 C -0.158 4.158 6 C -0.029 4.029 7 C 0.085 3.915 8 N -0.521 5.521 9 C 0.054 3.946 10 C -0.143 4.143 11 C 0.158 3.842 12 C -0.508 4.508 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.118 4.118 21 C -0.116 4.116 22 C 0.058 3.942 23 F -0.139 7.139 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.136 0.864 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.034 0.966 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.130 0.870 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 -0.223 14.861 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.227 6.227 4 C 0.049 3.951 5 C -0.177 4.177 6 C -0.030 4.030 7 C -0.043 4.043 8 N -0.245 5.245 9 C -0.074 4.074 10 C -0.201 4.201 11 C 0.032 3.968 12 C -0.546 4.546 13 H 0.099 0.901 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.700 3.300 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.137 4.137 21 C -0.135 4.135 22 C 0.038 3.962 23 F -0.118 7.118 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.000 1.000 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.964 0.001 14.437 17.541 hybrid contribution 1.410 0.782 0.437 1.670 sum -8.554 0.783 14.873 17.176 Atomic orbital electron populations 1.21764 0.92803 1.02767 1.03426 1.22822 0.95760 0.81835 1.01817 1.86087 1.18126 1.29507 1.88949 1.18882 0.83215 0.92827 1.00211 1.20920 0.93253 0.97521 1.06044 1.19691 0.93293 0.94784 0.95189 1.21093 0.96419 0.94198 0.92562 1.61984 1.50338 1.02309 1.09899 1.22038 0.94945 0.88159 1.02262 1.21791 0.99647 0.98097 1.00563 1.20273 0.88610 0.93072 0.94810 1.21011 1.25340 1.18835 0.89440 0.90137 1.24882 0.96664 0.96935 0.94764 1.69891 1.40557 1.41407 1.02033 0.86902 0.81267 0.82914 0.78943 1.20383 1.21142 1.19059 1.20875 1.00019 0.91263 1.01560 1.20911 0.90367 1.00586 1.01629 1.16908 0.87889 0.80838 1.10564 1.91458 1.72149 1.53636 1.94543 0.90343 0.91719 0.91460 0.91413 0.92032 0.84618 0.94311 0.90610 0.88873 0.96204 0.93984 0.91992 0.93142 0.94818 0.99951 0.92678 0.85196 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.58 5.46 37.16 0.20 0.78 16 3 O -0.31 -4.66 10.00 -19.60 -0.20 -4.85 16 4 C 0.09 1.50 6.69 -39.17 -0.26 1.24 16 5 C -0.16 -2.40 8.71 -39.44 -0.34 -2.75 16 6 C -0.03 -0.46 5.03 -104.64 -0.53 -0.99 16 7 C 0.09 1.37 4.94 -4.98 -0.02 1.34 16 8 N -0.52 -10.30 4.34 -237.51 -1.03 -11.33 16 9 C 0.05 0.97 5.51 -3.82 -0.02 0.95 16 10 C -0.14 -2.08 9.96 37.16 0.37 -1.71 16 11 C 0.16 3.72 3.61 -4.98 -0.02 3.70 16 12 C -0.51 -14.16 8.79 -34.44 -0.30 -14.46 16 13 H 0.08 2.45 7.56 -52.48 -0.40 2.05 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 16 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 20 C -0.12 -1.87 8.40 -39.57 -0.33 -2.20 16 21 C -0.12 -1.75 10.02 -39.54 -0.40 -2.15 16 22 C 0.06 0.94 7.31 -39.30 -0.29 0.66 16 23 F -0.14 -2.32 17.11 2.25 0.04 -2.28 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 28 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.14 1.81 6.30 -52.49 -0.33 1.48 16 30 H 0.04 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.08 1.04 6.54 -51.93 -0.34 0.70 16 32 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 33 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 34 H 0.04 0.53 6.89 -51.93 -0.36 0.17 16 35 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.81 5.38 -51.93 -0.28 0.53 16 38 H -0.02 -0.40 7.55 -51.92 -0.39 -0.79 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.13 1.95 7.98 -52.48 -0.42 1.53 16 41 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -31.18 336.91 -7.85 -39.03 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.18 Total: -1.02 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.66 Total: -14.63 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.26 Total: -37.95 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.20 Total: -4.85 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.18 -7.85 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235799539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.734 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds