Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46881 * 2 1 4 4 C 1.35955 * 117.00099 * 180.02562 * 3 2 1 5 5 C 1.38663 * 120.06318 * 359.97438 * 4 3 2 6 6 C 1.38183 * 119.97026 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.94993 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.47404 * 84.40717 * 7 6 5 9 9 C 1.46903 * 111.00066 * 199.76782 * 8 7 6 10 10 C 1.53000 * 109.47474 * 75.75326 * 9 8 7 11 11 C 1.46891 * 111.00247 * 75.81240 * 8 7 6 12 12 C 1.50703 * 109.47667 * 189.99936 * 11 8 7 13 13 H 1.08003 * 119.99376 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00204 * 180.02562 * 12 11 8 15 15 N 1.31517 * 119.99559 * 179.97438 * 14 12 11 16 16 Si 1.86789 * 120.00278 * 359.97438 * 14 12 11 17 17 H 1.48510 * 109.46847 * 90.00135 * 16 14 12 18 18 H 1.48499 * 109.47604 * 209.99914 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00556 * 16 14 12 20 20 C 1.38257 * 120.09282 * 359.97438 * 6 5 4 21 21 C 1.38258 * 120.13111 * 0.02562 * 20 6 5 22 22 C 1.38328 * 120.02696 * 359.97438 * 21 20 6 23 23 F 1.35103 * 120.04865 * 180.27748 * 22 21 20 24 24 H 1.08999 * 109.46505 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47070 * 299.99859 * 1 2 3 26 26 H 1.09001 * 109.47096 * 60.00151 * 1 2 3 27 27 H 1.09002 * 109.47070 * 240.00141 * 2 1 3 28 28 H 1.08990 * 109.47537 * 119.99690 * 2 1 3 29 29 H 1.07999 * 120.01145 * 359.97438 * 5 4 3 30 30 H 1.09003 * 109.46821 * 204.40830 * 7 6 5 31 31 H 1.09004 * 109.47105 * 324.40336 * 7 6 5 32 32 H 1.09002 * 109.47286 * 195.76075 * 9 8 7 33 33 H 1.09003 * 109.47068 * 315.75513 * 9 8 7 34 34 H 1.08998 * 109.47561 * 294.86432 * 10 9 8 35 35 H 1.09010 * 109.46504 * 54.86151 * 10 9 8 36 36 H 1.08998 * 109.47338 * 174.85580 * 10 9 8 37 37 H 1.09005 * 109.46944 * 310.00122 * 11 8 7 38 38 H 1.09007 * 109.47265 * 69.99854 * 11 8 7 39 39 H 0.96999 * 119.99466 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.92925 * 180.02562 * 20 6 5 41 41 H 1.07997 * 119.98305 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.2001 0.4268 -0.0005 6 6 5.5697 0.6102 -0.0005 7 6 6.4887 -0.5842 -0.0011 8 7 6.6802 -1.0540 -1.3796 9 6 7.1583 -2.4429 -1.4008 10 6 5.9972 -3.3870 -1.0821 11 6 7.5957 -0.1710 -2.1144 12 6 7.5781 -0.5339 -3.5770 13 1 6.9493 -1.3398 -3.9258 14 6 8.3647 0.1628 -4.4697 15 7 8.3497 -0.1544 -5.7459 16 14 9.4516 1.5570 -3.8665 17 1 10.7848 1.0194 -3.4936 18 1 9.6085 2.5649 -4.9457 19 1 8.8257 2.1950 -2.6805 20 6 6.0981 1.8878 -0.0011 21 6 5.2583 2.9861 -0.0011 22 6 3.8865 2.8086 -0.0011 23 9 3.0655 3.8815 -0.0068 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.7887 -0.5717 0.0003 30 1 7.4519 -0.3016 0.4236 31 1 6.0480 -1.3820 0.5968 32 1 7.5550 -2.6756 -2.3890 33 1 7.9436 -2.5683 -0.6553 34 1 5.6599 -3.2159 -0.0598 35 1 5.1751 -3.1976 -1.7724 36 1 6.3293 -4.4198 -1.1872 37 1 7.2772 0.8644 -1.9931 38 1 8.6062 -0.2885 -1.7230 39 1 8.9028 0.3360 -6.3740 40 1 7.1690 2.0281 -0.0015 41 1 5.6736 3.9831 -0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235799539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -77.864705 kcal Electronic energy + Delta-G solvation = -22338.296632 eV Core-core repulsion = 18939.218561 eV Total energy + Delta-G solvation = -3399.078071 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.81784 -41.13375 -39.33838 -37.86549 -34.72105 -33.11665 -32.44619 -31.69484 -30.64011 -29.04231 -26.26341 -25.03766 -23.88562 -22.85020 -22.69534 -21.32261 -19.23368 -18.91987 -18.04714 -17.77053 -17.33264 -16.71796 -16.30324 -16.21436 -15.99239 -15.44114 -15.31794 -14.97947 -14.59230 -14.50880 -14.26632 -14.05368 -13.98168 -13.42530 -13.24102 -12.94965 -12.82234 -12.72688 -12.59671 -12.48987 -12.39249 -12.08154 -11.85314 -11.82331 -11.68487 -11.48852 -11.31364 -10.76275 -9.82615 -9.19677 -8.97217 -8.26084 -6.28040 0.10502 0.28220 1.34171 1.37059 1.46901 2.10523 2.35825 2.50406 3.08172 3.23872 3.39004 3.66683 3.79888 4.05342 4.09814 4.13203 4.23379 4.29315 4.37215 4.44380 4.51039 4.55505 4.62171 4.76297 4.85193 4.91723 4.93918 4.98940 5.01243 5.03165 5.11358 5.18791 5.23022 5.31433 5.46830 5.54564 5.59808 5.68813 6.03301 6.31260 6.42533 6.68038 6.78617 7.35142 8.90605 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.005512 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.821238 B = 5078.786621 C = 5969.434457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.088 3.912 5 C -0.159 4.159 6 C -0.041 4.041 7 C 0.088 3.912 8 N -0.536 5.536 9 C 0.053 3.947 10 C -0.133 4.133 11 C 0.170 3.830 12 C -0.510 4.510 13 H 0.037 0.963 14 C 0.007 3.993 15 N -0.950 5.950 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.243 1.243 20 C -0.130 4.130 21 C -0.114 4.114 22 C 0.036 3.964 23 F -0.146 7.146 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.034 0.966 38 H -0.013 1.013 39 H 0.265 0.735 40 H 0.139 0.861 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -0.111 17.283 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.244 6.244 4 C 0.042 3.958 5 C -0.178 4.178 6 C -0.042 4.042 7 C -0.039 4.039 8 N -0.261 5.261 9 C -0.075 4.075 10 C -0.191 4.191 11 C 0.043 3.957 12 C -0.549 4.549 13 H 0.055 0.945 14 C -0.190 4.190 15 N -0.591 5.591 16 Si 0.763 3.237 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.166 1.166 20 C -0.148 4.148 21 C -0.132 4.132 22 C 0.016 3.984 23 F -0.125 7.125 24 H 0.122 0.878 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.170 0.830 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.074 0.926 40 H 0.157 0.843 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.938 0.096 16.890 19.597 hybrid contribution 1.290 0.642 -0.326 1.477 sum -8.648 0.737 16.564 18.700 Atomic orbital electron populations 1.21803 0.91078 1.04349 1.03158 1.23144 0.97186 0.80335 1.02481 1.86085 1.17649 1.31871 1.88778 1.19051 0.83883 0.92955 0.99937 1.21086 0.92986 0.98155 1.05553 1.19837 0.93681 0.95019 0.95659 1.21170 0.97197 0.95104 0.90453 1.61870 1.49368 1.02514 1.12304 1.22032 0.96889 0.88037 1.00529 1.21704 0.97645 0.98104 1.01621 1.19992 0.89630 0.93730 0.92391 1.21277 1.24035 1.17334 0.92228 0.94474 1.25815 0.98440 0.99976 0.94746 1.70056 1.42165 1.43263 1.03645 0.85822 0.79505 0.79301 0.79062 1.19201 1.21217 1.16614 1.21068 1.00588 0.91398 1.01789 1.21145 0.89877 1.01611 1.00589 1.17229 0.88486 0.81027 1.11633 1.91433 1.72413 1.53938 1.94707 0.87808 0.91419 0.92293 0.91786 0.90215 0.82959 0.93287 0.87820 0.92981 0.94477 0.91296 0.93526 0.91367 0.94805 0.99569 0.92641 0.84347 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.04 0.87 5.46 71.98 0.39 1.27 16 3 O -0.33 -9.50 10.00 -93.04 -0.93 -10.43 16 4 C 0.09 2.69 6.69 22.53 0.15 2.84 16 5 C -0.16 -4.53 8.71 22.36 0.19 -4.33 16 6 C -0.04 -1.23 5.03 -19.87 -0.10 -1.33 16 7 C 0.09 2.57 4.94 85.56 0.42 2.99 16 8 N -0.54 -20.46 4.34 -905.36 -3.93 -24.39 16 9 C 0.05 1.84 5.51 86.30 0.48 2.31 16 10 C -0.13 -3.57 9.96 71.98 0.72 -2.86 16 11 C 0.17 7.80 3.61 85.56 0.31 8.11 16 12 C -0.51 -29.09 8.79 25.60 0.22 -28.87 16 13 H 0.04 2.37 7.56 -2.91 -0.02 2.35 16 14 C 0.01 0.41 5.47 84.65 0.46 0.88 16 15 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 16 Si 0.94 43.56 27.47 68.60 1.88 45.44 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 20 C -0.13 -3.82 8.40 22.28 0.19 -3.63 16 21 C -0.11 -3.24 10.02 22.30 0.22 -3.02 16 22 C 0.04 1.14 7.31 22.45 0.16 1.31 16 23 F -0.15 -4.79 17.11 44.97 0.77 -4.02 16 24 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.34 7.66 -2.39 -0.02 1.32 16 28 H 0.08 1.32 7.66 -2.39 -0.02 1.31 16 29 H 0.15 3.69 6.30 -2.91 -0.02 3.67 16 30 H 0.05 1.36 7.90 -2.39 -0.02 1.34 16 31 H 0.10 2.43 6.54 -2.38 -0.02 2.42 16 32 H 0.05 2.22 6.58 -2.39 -0.02 2.21 16 33 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 34 H 0.07 1.48 6.89 -2.39 -0.02 1.47 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.03 1.56 5.38 -2.38 -0.01 1.55 16 38 H -0.01 -0.60 7.55 -2.38 -0.02 -0.62 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.14 3.77 7.98 -2.91 -0.02 3.75 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -69.10 336.91 3.61 -65.49 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.96 Total: 13.06 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.57 Total: -25.87 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.63 Total: -83.67 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.93 Total: -10.43 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.77 Total: -4.02 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -69.10 3.61 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235799539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.377 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds