Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99676 * 2 1 4 4 C 1.46896 * 111.00026 * 123.94942 * 2 1 3 5 5 C 1.50700 * 109.47158 * 170.00340 * 4 2 1 6 6 C 1.38419 * 119.92760 * 270.25832 * 5 4 2 7 7 C 1.38369 * 120.30496 * 180.30000 * 6 5 4 8 8 C 1.37953 * 120.14632 * 359.44063 * 7 6 5 9 9 C 1.39635 * 119.84759 * 0.28228 * 8 7 6 10 10 C 1.47874 * 120.14628 * 180.02562 * 9 8 7 11 11 C 1.39156 * 120.33288 * 129.99701 * 10 9 8 12 12 C 1.38088 * 119.98354 * 180.02562 * 11 10 9 13 13 C 1.38918 * 120.67486 * 0.02562 * 12 11 10 14 14 C 1.36439 * 120.68568 * 359.97438 * 13 12 11 15 15 C 1.40755 * 119.98430 * 359.68604 * 14 13 12 16 16 C 1.40878 * 120.32841 * 180.29852 * 15 14 13 17 17 H 1.07999 * 119.99851 * 149.59378 * 16 15 14 18 18 C 1.40075 * 120.00223 * 329.58571 * 16 15 14 19 19 N 1.30768 * 120.00120 * 162.39975 * 18 16 15 20 20 Si 1.86794 * 119.99844 * 342.39814 * 18 16 15 21 21 H 1.48502 * 109.47200 * 95.38235 * 20 18 16 22 22 H 1.48500 * 109.47575 * 215.38219 * 20 18 16 23 23 H 1.48505 * 109.47374 * 335.38049 * 20 18 16 24 24 C 1.37905 * 119.92579 * 90.00248 * 5 4 2 25 25 H 1.09002 * 109.47303 * 296.04196 * 1 2 3 26 26 H 1.08991 * 109.47076 * 56.04907 * 1 2 3 27 27 H 1.09004 * 109.46818 * 176.04828 * 1 2 3 28 28 H 1.09003 * 109.47432 * 183.95248 * 3 2 1 29 29 H 1.08995 * 109.47357 * 303.95229 * 3 2 1 30 30 H 1.09002 * 109.47398 * 63.95318 * 3 2 1 31 31 H 1.09001 * 109.47162 * 50.00478 * 4 2 1 32 32 H 1.08998 * 109.47482 * 290.00561 * 4 2 1 33 33 H 1.08006 * 119.84588 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.92858 * 179.72016 * 7 6 5 35 35 H 1.07998 * 120.07803 * 180.25367 * 8 7 6 36 36 H 1.08008 * 120.00949 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.66170 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.66016 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.00668 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99979 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.07374 * 359.95308 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4818 -0.9523 0.9729 6 6 3.9683 -2.0567 0.2950 7 6 5.3317 -2.2389 0.1446 8 6 6.2153 -1.3135 0.6602 9 6 5.7312 -0.1941 1.3403 10 6 6.6725 0.8022 1.8952 11 6 6.4958 2.1576 1.6340 12 6 7.3795 3.0818 2.1555 13 6 8.4495 2.6739 2.9419 14 6 8.6487 1.3521 3.2153 15 6 7.7612 0.3866 2.7042 16 6 7.9563 -0.9796 2.9872 17 1 7.1078 -1.6449 3.0490 18 6 9.2509 -1.4753 3.1883 19 7 9.4249 -2.6294 3.7781 20 14 10.7287 -0.4878 2.6139 21 1 11.2536 0.3204 3.7438 22 1 11.7864 -1.4131 2.1341 23 1 10.3213 0.4146 1.5071 24 6 4.3540 -0.0196 1.4935 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0827 1.3434 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5090 -1.7406 1.1757 32 1 1.7975 -0.2247 2.0628 33 1 3.2807 -2.7819 -0.1147 34 1 5.7048 -3.1051 -0.3816 35 1 7.2791 -1.4546 0.5386 36 1 5.6678 2.4867 1.0236 37 1 7.2372 4.1325 1.9498 38 1 9.1309 3.4107 3.3410 39 1 9.4844 1.0472 3.8276 40 1 10.3214 -2.9724 3.9177 41 1 3.9729 0.8442 2.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236418530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = 41.937082 kcal Electronic energy + Delta-G solvation = -21387.361012 eV Core-core repulsion = 18424.247162 eV Total energy + Delta-G solvation = -2963.113851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.18950 -37.78217 -36.54013 -33.70096 -31.99338 -30.99104 -30.41490 -28.30678 -27.48957 -26.38811 -25.20576 -22.51345 -22.27229 -21.09401 -20.71966 -19.25595 -17.46262 -16.25980 -15.55052 -15.38351 -15.33354 -15.03415 -14.49954 -14.25694 -13.97261 -13.69014 -13.38564 -12.71695 -12.54802 -12.41143 -12.27750 -12.14028 -11.93675 -11.69444 -11.68524 -11.56774 -11.36245 -10.97615 -10.87968 -10.56467 -10.35474 -10.32080 -9.81579 -9.59132 -9.19957 -8.41938 -8.33468 -8.03974 -7.66540 -7.30284 -7.00744 -4.50560 1.87111 2.04279 2.60920 2.73345 3.07152 3.18035 3.28011 3.92833 4.03831 4.44514 4.60615 5.03850 5.13936 5.25914 5.33706 5.39652 5.52573 5.61029 5.61381 5.73410 5.76058 5.79326 5.87908 5.96705 6.05822 6.07693 6.20584 6.24386 6.40015 6.55514 6.70581 6.76218 6.85575 6.97968 7.04638 7.12361 7.14880 7.21351 7.33024 7.42487 7.57775 7.67946 7.80793 7.87516 8.07438 8.31530 8.61502 8.73763 10.00231 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.005228 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.997234 B = 5354.555568 C = 6316.965249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.020 3.980 4 C 0.099 3.901 5 C -0.090 4.090 6 C -0.120 4.120 7 C -0.127 4.127 8 C -0.089 4.089 9 C 0.013 3.987 10 C -0.169 4.169 11 C -0.061 4.061 12 C -0.248 4.248 13 C -0.075 4.075 14 C -0.233 4.233 15 C 0.108 3.892 16 C -0.435 4.435 17 H 0.097 0.903 18 C 0.085 3.915 19 N -0.800 5.800 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.243 1.243 24 C -0.120 4.120 25 H 0.022 0.978 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.286 0.714 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 3.195 -5.527 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.128 4.128 4 C -0.028 4.028 5 C -0.091 4.091 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.107 4.107 9 C 0.013 3.987 10 C -0.171 4.171 11 C -0.079 4.079 12 C -0.267 4.267 13 C -0.093 4.093 14 C -0.252 4.252 15 C 0.105 3.895 16 C -0.463 4.463 17 H 0.114 0.886 18 C -0.135 4.135 19 N -0.423 5.423 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.166 1.166 24 C -0.139 4.139 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.553 2.706 -5.847 11.522 hybrid contribution 0.521 0.702 0.732 1.141 sum -9.031 3.408 -5.115 10.924 Atomic orbital electron populations 1.22379 0.87757 1.02008 1.00238 1.62007 1.07089 1.14194 1.43230 1.22472 1.02150 0.88302 0.99862 1.21011 0.92443 0.98180 0.91188 1.19376 0.93623 0.95889 1.00173 1.20773 0.95063 0.97741 1.00273 1.20988 0.93227 0.99216 1.01057 1.21392 1.00096 0.93311 0.95946 1.18709 0.91721 0.93960 0.94351 1.18605 1.01136 0.91530 1.05786 1.20679 0.97132 0.92366 0.97710 1.20281 1.00362 0.97383 1.08663 1.20397 0.96556 0.95306 0.97041 1.20782 1.03643 0.93202 1.07546 1.17640 0.90060 0.93360 0.88482 1.19484 0.94424 0.93381 1.39032 0.88562 1.26193 1.00941 0.94904 0.91472 1.69669 1.25522 1.18396 1.28758 0.86374 0.79412 0.79572 0.81308 1.19627 1.21747 1.16581 1.21079 0.92679 0.98804 1.01289 0.95899 0.91544 0.91511 0.90302 0.91834 0.95810 0.90402 0.94297 0.87243 0.86916 0.85605 0.88742 0.88879 0.88989 0.88184 0.90352 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.07 0.57 0.82 16 2 N -0.54 -7.01 5.01 -252.73 -1.27 -8.27 16 3 C 0.02 0.25 9.13 60.06 0.55 0.80 16 4 C 0.10 1.36 5.11 -4.98 -0.03 1.33 16 5 C -0.09 -1.49 4.88 -104.68 -0.51 -2.01 16 6 C -0.12 -1.98 9.70 -39.47 -0.38 -2.37 16 7 C -0.13 -2.26 10.03 -39.64 -0.40 -2.66 16 8 C -0.09 -1.83 8.11 -39.16 -0.32 -2.15 16 9 C 0.01 0.27 4.93 -104.90 -0.52 -0.25 16 10 C -0.17 -3.86 5.52 -104.23 -0.58 -4.44 16 11 C -0.06 -1.27 9.51 -39.30 -0.37 -1.64 16 12 C -0.25 -5.09 10.03 -39.38 -0.40 -5.48 16 13 C -0.07 -1.60 9.96 -39.98 -0.40 -2.00 16 14 C -0.23 -5.52 7.10 -39.28 -0.28 -5.80 16 15 C 0.11 2.67 5.09 -106.56 -0.54 2.12 16 16 C -0.44 -11.33 7.52 -37.89 -0.29 -11.61 16 17 H 0.10 2.68 7.04 -52.49 -0.37 2.32 16 18 C 0.08 2.15 5.41 -17.32 -0.09 2.06 16 19 N -0.80 -20.73 13.92 55.55 0.77 -19.95 16 20 Si 0.91 20.28 24.52 -169.99 -4.17 16.11 16 21 H -0.27 -5.90 6.72 56.52 0.38 -5.52 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.24 -5.58 6.85 56.52 0.39 -5.20 16 24 C -0.12 -2.22 7.43 -39.17 -0.29 -2.51 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.08 1.13 6.16 -51.93 -0.32 0.81 16 29 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 32 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.13 2.72 7.33 -52.49 -0.38 2.34 16 36 H 0.09 1.75 8.04 -52.48 -0.42 1.33 16 37 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.10 2.36 4.76 -52.49 -0.25 2.11 16 40 H 0.29 6.72 8.29 -40.82 -0.34 6.39 16 41 H 0.11 1.94 8.01 -52.49 -0.42 1.52 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -26.81 331.77 -9.90 -36.70 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.97 Total: 6.19 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: -4.26 Total: -35.78 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: -0.49 Total: -28.22 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.17 Total: 16.11 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.81 -9.90 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236418530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.642 kcal (2) G-P(sol) polarization free energy of solvation -26.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds