Wall clock time and date at job start Tue Mar 31 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99676 * 2 1 4 4 C 1.46896 * 111.00026 * 123.94942 * 2 1 3 5 5 C 1.50700 * 109.47158 * 170.00340 * 4 2 1 6 6 C 1.38419 * 119.92760 * 270.25832 * 5 4 2 7 7 C 1.38369 * 120.30496 * 180.30000 * 6 5 4 8 8 C 1.37953 * 120.14632 * 359.44063 * 7 6 5 9 9 C 1.39635 * 119.84759 * 0.28228 * 8 7 6 10 10 C 1.47874 * 120.14628 * 180.02562 * 9 8 7 11 11 C 1.39156 * 120.33288 * 129.99701 * 10 9 8 12 12 C 1.38088 * 119.98354 * 180.02562 * 11 10 9 13 13 C 1.38918 * 120.67486 * 0.02562 * 12 11 10 14 14 C 1.36439 * 120.68568 * 359.97438 * 13 12 11 15 15 C 1.40755 * 119.98430 * 359.68604 * 14 13 12 16 16 C 1.40878 * 120.32841 * 180.29852 * 15 14 13 17 17 H 1.07999 * 119.99851 * 149.59378 * 16 15 14 18 18 C 1.40075 * 120.00223 * 329.58571 * 16 15 14 19 19 N 1.30768 * 120.00120 * 162.39975 * 18 16 15 20 20 Si 1.86794 * 119.99844 * 342.39814 * 18 16 15 21 21 H 1.48502 * 109.47200 * 95.38235 * 20 18 16 22 22 H 1.48500 * 109.47575 * 215.38219 * 20 18 16 23 23 H 1.48505 * 109.47374 * 335.38049 * 20 18 16 24 24 C 1.37905 * 119.92579 * 90.00248 * 5 4 2 25 25 H 1.09002 * 109.47303 * 296.04196 * 1 2 3 26 26 H 1.08991 * 109.47076 * 56.04907 * 1 2 3 27 27 H 1.09004 * 109.46818 * 176.04828 * 1 2 3 28 28 H 1.09003 * 109.47432 * 183.95248 * 3 2 1 29 29 H 1.08995 * 109.47357 * 303.95229 * 3 2 1 30 30 H 1.09002 * 109.47398 * 63.95318 * 3 2 1 31 31 H 1.09001 * 109.47162 * 50.00478 * 4 2 1 32 32 H 1.08998 * 109.47482 * 290.00561 * 4 2 1 33 33 H 1.08006 * 119.84588 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.92858 * 179.72016 * 7 6 5 35 35 H 1.07998 * 120.07803 * 180.25367 * 8 7 6 36 36 H 1.08008 * 120.00949 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.66170 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.66016 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.00668 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99979 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.07374 * 359.95308 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4818 -0.9523 0.9729 6 6 3.9683 -2.0567 0.2950 7 6 5.3317 -2.2389 0.1446 8 6 6.2153 -1.3135 0.6602 9 6 5.7312 -0.1941 1.3403 10 6 6.6725 0.8022 1.8952 11 6 6.4958 2.1576 1.6340 12 6 7.3795 3.0818 2.1555 13 6 8.4495 2.6739 2.9419 14 6 8.6487 1.3521 3.2153 15 6 7.7612 0.3866 2.7042 16 6 7.9563 -0.9796 2.9872 17 1 7.1078 -1.6449 3.0490 18 6 9.2509 -1.4753 3.1883 19 7 9.4249 -2.6294 3.7781 20 14 10.7287 -0.4878 2.6139 21 1 11.2536 0.3204 3.7438 22 1 11.7864 -1.4131 2.1341 23 1 10.3213 0.4146 1.5071 24 6 4.3540 -0.0196 1.4935 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0827 1.3434 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5090 -1.7406 1.1757 32 1 1.7975 -0.2247 2.0628 33 1 3.2807 -2.7819 -0.1147 34 1 5.7048 -3.1051 -0.3816 35 1 7.2791 -1.4546 0.5386 36 1 5.6678 2.4867 1.0236 37 1 7.2372 4.1325 1.9498 38 1 9.1309 3.4107 3.3410 39 1 9.4844 1.0472 3.8276 40 1 10.3214 -2.9724 3.9177 41 1 3.9729 0.8442 2.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236418530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:30 Heat of formation + Delta-G solvation = 28.225505 kcal Electronic energy + Delta-G solvation = -21387.955591 eV Core-core repulsion = 18424.247162 eV Total energy + Delta-G solvation = -2963.708429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65178 -39.30642 -37.73126 -35.55054 -33.51376 -32.46784 -32.10418 -29.87447 -28.41982 -27.54373 -27.01642 -24.07271 -23.48588 -22.72374 -22.15833 -20.77561 -19.32115 -17.83869 -17.11975 -16.57763 -16.45336 -16.34350 -15.93230 -15.75419 -15.51049 -15.24473 -14.84638 -14.44401 -14.10244 -13.85394 -13.60822 -13.37563 -13.23457 -13.16534 -12.86702 -12.71206 -12.64865 -12.57910 -12.44201 -12.14635 -12.03299 -11.75364 -11.57418 -11.32118 -10.98898 -9.91943 -9.64329 -9.45186 -9.22042 -8.94068 -8.88597 -6.42396 0.31297 0.60511 0.84148 1.06021 1.24833 1.40493 1.46879 2.10621 2.62037 2.87566 3.31703 3.54389 3.90175 4.01933 4.16560 4.30114 4.32352 4.37883 4.41751 4.42996 4.51254 4.62337 4.68124 4.73685 4.78396 4.80368 4.84515 4.88851 5.04971 5.06735 5.08712 5.25600 5.29040 5.34245 5.53280 5.70506 5.76282 5.79354 5.89152 5.98770 6.04557 6.08043 6.15357 6.25997 6.31552 6.43735 6.78046 6.84841 8.18183 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.005228 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.997234 B = 5354.555568 C = 6316.965249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.021 3.979 4 C 0.102 3.898 5 C -0.085 4.085 6 C -0.114 4.114 7 C -0.130 4.130 8 C -0.113 4.113 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.070 4.070 12 C -0.230 4.230 13 C -0.082 4.082 14 C -0.250 4.250 15 C 0.084 3.916 16 C -0.459 4.459 17 H 0.060 0.940 18 C 0.052 3.948 19 N -0.844 5.844 20 Si 0.957 3.043 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.255 1.255 24 C -0.120 4.120 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.293 0.707 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 5.044 -6.660 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.127 4.127 4 C -0.025 4.025 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.148 4.148 8 C -0.131 4.131 9 C -0.016 4.016 10 C -0.175 4.175 11 C -0.088 4.088 12 C -0.249 4.249 13 C -0.100 4.100 14 C -0.270 4.270 15 C 0.082 3.918 16 C -0.488 4.488 17 H 0.078 0.922 18 C -0.163 4.163 19 N -0.470 5.470 20 Si 0.782 3.218 21 H -0.185 1.185 22 H -0.206 1.206 23 H -0.179 1.179 24 C -0.139 4.139 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.432 4.562 -6.979 14.149 hybrid contribution 0.871 0.276 0.986 1.344 sum -10.561 4.838 -5.993 13.071 Atomic orbital electron populations 1.22451 0.85712 1.03093 1.01062 1.61990 1.08935 1.14178 1.42604 1.22448 1.00872 0.88578 1.00806 1.20997 0.90287 0.99468 0.91728 1.19736 0.95302 0.94933 0.98543 1.21138 0.94785 0.98092 0.99261 1.21233 0.93771 0.99093 1.00662 1.21306 0.99364 0.94603 0.97832 1.18802 0.92733 0.94319 0.95767 1.19006 1.00628 0.93131 1.04758 1.21035 0.98168 0.91633 0.97931 1.20795 0.98751 0.99185 1.06186 1.20787 0.97426 0.94916 0.96904 1.20912 1.03655 0.94289 1.08096 1.17853 0.91497 0.93090 0.89384 1.19284 0.93830 0.93803 1.41908 0.92216 1.26741 1.02602 0.95627 0.91363 1.69697 1.26355 1.19897 1.31042 0.85603 0.77163 0.78458 0.80612 1.18512 1.20560 1.17919 1.21139 0.91774 0.99569 1.01387 0.95342 0.90354 0.90425 0.92447 0.90269 0.95408 0.88614 0.94163 0.84153 0.84985 0.88221 0.86162 0.85159 0.85729 0.88650 0.89689 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.57 127.69 1.22 1.63 16 2 N -0.55 -12.65 5.01 -953.49 -4.78 -17.43 16 3 C 0.02 0.48 9.13 127.69 1.17 1.65 16 4 C 0.10 2.53 5.11 85.56 0.44 2.97 16 5 C -0.08 -2.68 4.88 -19.90 -0.10 -2.78 16 6 C -0.11 -3.60 9.70 22.34 0.22 -3.38 16 7 C -0.13 -4.64 10.03 22.23 0.22 -4.42 16 8 C -0.11 -4.85 8.11 22.54 0.18 -4.66 16 9 C -0.02 -0.70 4.93 -20.04 -0.10 -0.80 16 10 C -0.17 -8.07 5.52 -19.61 -0.11 -8.17 16 11 C -0.07 -2.80 9.51 22.45 0.21 -2.59 16 12 C -0.23 -8.74 10.03 22.40 0.22 -8.52 16 13 C -0.08 -3.35 9.96 22.01 0.22 -3.13 16 14 C -0.25 -11.89 7.10 22.47 0.16 -11.73 16 15 C 0.08 4.31 5.09 -21.12 -0.11 4.21 16 16 C -0.46 -25.44 7.52 23.36 0.18 -25.27 16 17 H 0.06 3.63 7.04 -2.91 -0.02 3.61 16 18 C 0.05 2.76 5.41 85.30 0.46 3.22 16 19 N -0.84 -46.13 13.92 21.85 0.30 -45.82 16 20 Si 0.96 43.04 24.52 68.60 1.68 44.72 16 21 H -0.26 -11.08 6.72 99.48 0.67 -10.41 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.26 -11.82 6.85 99.48 0.68 -11.14 16 24 C -0.12 -4.41 7.43 22.54 0.17 -4.24 16 25 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 27 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 28 H 0.06 1.55 6.16 -2.39 -0.01 1.53 16 29 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 2.04 8.01 -2.39 -0.02 2.02 16 32 H 0.04 0.99 8.06 -2.39 -0.02 0.97 16 33 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 34 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.10 4.70 7.33 -2.91 -0.02 4.68 16 36 H 0.12 4.17 8.04 -2.91 -0.02 4.14 16 37 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.10 4.54 4.76 -2.91 -0.01 4.52 16 40 H 0.29 14.43 8.29 -92.71 -0.77 13.66 16 41 H 0.12 4.00 8.01 -2.91 -0.02 3.97 16 Total: -1.00 -60.45 331.77 2.81 -57.64 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.94 Total: 26.90 kcal Atomic # 6 Polarization: -70.67 SS G_CDS: 4.66 Total: -66.02 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -4.47 Total: -63.25 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.68 Total: 44.72 kcal Total: -60.45 2.81 -57.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236418530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.863 kcal (2) G-P(sol) polarization free energy of solvation -60.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds