Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99946 * 2 1 4 4 C 1.46905 * 110.99706 * 123.95494 * 2 1 3 5 5 C 1.50700 * 109.47466 * 66.04614 * 4 2 1 6 6 C 1.38342 * 119.93898 * 270.25493 * 5 4 2 7 7 C 1.38297 * 120.23953 * 180.25468 * 6 5 4 8 8 C 1.38044 * 120.12313 * 359.74003 * 7 6 5 9 9 C 1.39305 * 119.87586 * 0.02562 * 8 7 6 10 10 C 1.48413 * 120.12067 * 179.97438 * 9 8 7 11 11 C 1.39724 * 119.99995 * 179.74558 * 10 9 8 12 12 C 1.38395 * 120.37823 * 179.72614 * 11 10 9 13 13 C 1.37722 * 120.37574 * 0.55246 * 12 11 10 14 14 C 1.40749 * 119.98958 * 359.72503 * 13 12 11 15 15 C 1.41426 * 120.18279 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99623 * 204.47748 * 15 14 13 17 17 C 1.39923 * 120.00438 * 24.48715 * 15 14 13 18 18 N 1.30833 * 120.00177 * 17.89500 * 17 15 14 19 19 Si 1.86804 * 120.00180 * 197.89912 * 17 15 14 20 20 H 1.48497 * 109.46999 * 89.99795 * 19 17 15 21 21 H 1.48500 * 109.47182 * 209.99610 * 19 17 15 22 22 H 1.48495 * 109.46960 * 329.99648 * 19 17 15 23 23 C 1.38735 * 119.99661 * 0.02562 * 10 9 8 24 24 C 1.37996 * 119.94028 * 89.99774 * 5 4 2 25 25 H 1.09004 * 109.47225 * 296.04312 * 1 2 3 26 26 H 1.08997 * 109.46975 * 56.04594 * 1 2 3 27 27 H 1.09006 * 109.47170 * 176.04513 * 1 2 3 28 28 H 1.09005 * 109.46622 * 183.95050 * 3 2 1 29 29 H 1.08994 * 109.47192 * 303.95043 * 3 2 1 30 30 H 1.09001 * 109.47275 * 63.95605 * 3 2 1 31 31 H 1.08993 * 109.47156 * 306.04309 * 4 2 1 32 32 H 1.09000 * 109.47042 * 186.04504 * 4 2 1 33 33 H 1.07997 * 119.88030 * 359.97134 * 6 5 4 34 34 H 1.08007 * 119.93948 * 179.72161 * 7 6 5 35 35 H 1.07996 * 120.06025 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.81334 * 359.97438 * 11 10 9 37 37 H 1.07992 * 119.81049 * 180.28065 * 12 11 10 38 38 H 1.08002 * 120.00112 * 179.70885 * 13 12 11 39 39 H 0.96997 * 120.00697 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.18462 * 0.02562 * 23 10 9 41 41 H 1.08004 * 120.06099 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2205 0.9729 6 6 0.4473 -2.7012 1.4904 7 6 0.1146 -4.0360 1.3474 8 6 0.9663 -4.8949 0.6822 9 6 2.1631 -4.4151 0.1550 10 6 3.0831 -5.3338 -0.5607 11 6 4.2804 -4.8488 -1.0931 12 6 5.1466 -5.6997 -1.7570 13 6 4.8331 -7.0320 -1.9102 14 6 3.6285 -7.5361 -1.3851 15 6 3.3026 -8.9036 -1.5396 16 1 2.2701 -9.2193 -1.5112 17 6 4.3178 -9.8477 -1.7292 18 7 5.5541 -9.5497 -1.4216 19 14 3.9081 -11.5337 -2.4216 20 1 4.0062 -11.4976 -3.9029 21 1 4.8657 -12.5346 -1.8864 22 1 2.5270 -11.9089 -2.0258 23 6 2.7515 -6.6731 -0.7060 24 6 2.4933 -3.0692 0.3017 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0828 1.3431 -0.0708 29 1 1.5898 1.9162 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1757 33 1 -0.2217 -2.0328 2.0118 34 1 -0.8133 -4.4071 1.7572 35 1 0.7056 -5.9371 0.5715 36 1 4.5331 -3.8046 -0.9825 37 1 6.0717 -5.3160 -2.1610 38 1 5.5114 -7.6897 -2.4335 39 1 6.2579 -10.2040 -1.5533 40 1 1.8245 -7.0501 -0.2999 41 1 3.4199 -2.6920 -0.1052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236419175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = 41.226182 kcal Electronic energy + Delta-G solvation = -20627.223518 eV Core-core repulsion = 17664.078840 eV Total energy + Delta-G solvation = -2963.144678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.39686 -37.63830 -36.64721 -33.80283 -31.85892 -31.22428 -29.85338 -28.04889 -27.57577 -26.63187 -25.24002 -22.66409 -22.56778 -21.28162 -20.12606 -19.52094 -17.28084 -16.31443 -15.52904 -15.52852 -15.28439 -15.19922 -14.55039 -14.36707 -14.13288 -13.32826 -13.04005 -12.82272 -12.63184 -12.53678 -12.39929 -12.19463 -12.02057 -11.75096 -11.70384 -11.52861 -11.20031 -11.13290 -10.85392 -10.68617 -10.50908 -10.32038 -9.68738 -9.35894 -9.22478 -8.72799 -8.54803 -8.32135 -7.49642 -6.94935 -6.75472 -4.36793 1.49638 1.76952 2.79628 3.05767 3.08196 3.11010 3.23153 3.90929 3.93796 4.36627 4.71380 4.85529 4.98354 5.09992 5.20522 5.30621 5.33624 5.39698 5.49773 5.58631 5.66496 5.70115 5.72352 5.86402 5.87863 5.95795 6.21197 6.30340 6.41960 6.55713 6.76684 6.82996 6.89202 6.92871 6.94035 6.99540 7.03997 7.21830 7.38279 7.42136 7.58502 7.86026 8.01016 8.06226 8.26130 8.61051 8.88104 8.94027 10.19209 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.003426 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.361359 B = 8171.767811 C = 8760.409538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.098 3.902 5 C -0.084 4.084 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.010 4.010 10 C -0.043 4.043 11 C -0.218 4.218 12 C -0.109 4.109 13 C -0.155 4.155 14 C 0.106 3.894 15 C -0.465 4.465 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.202 4.202 24 C -0.098 4.098 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.280 0.720 40 H 0.097 0.903 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 13.522 3.827 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.029 4.029 5 C -0.085 4.085 6 C -0.153 4.153 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.010 4.010 10 C -0.043 4.043 11 C -0.237 4.237 12 C -0.127 4.127 13 C -0.174 4.174 14 C 0.104 3.896 15 C -0.495 4.495 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.222 4.222 24 C -0.116 4.116 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.178 13.201 3.417 14.970 hybrid contribution -0.338 -0.418 0.484 0.723 sum -6.516 12.783 3.901 14.868 Atomic orbital electron populations 1.22467 0.87350 1.03005 0.99862 1.61959 1.08197 1.13242 1.43103 1.22388 1.00908 0.88804 1.00244 1.21033 1.00296 0.90459 0.91159 1.19494 0.95200 0.94305 0.99467 1.20848 0.96651 0.95599 1.02215 1.20954 0.99445 0.93512 0.99942 1.21339 0.94071 1.00068 0.98165 1.19156 0.93667 0.92929 0.95295 1.18327 0.94010 0.92743 0.99189 1.20443 0.96614 0.97837 1.08847 1.20637 0.97694 0.94448 0.99929 1.21432 0.99503 0.93563 1.02904 1.17540 0.91048 0.92825 0.88187 1.19557 0.94307 0.91417 1.44230 0.90429 1.25885 0.94485 1.00926 0.92803 1.69822 1.01397 1.36401 1.34490 0.86321 0.79521 0.80934 0.79995 1.19286 1.20361 1.18635 1.21092 1.01817 0.92710 1.06535 1.21085 0.99641 0.92566 0.98343 0.95978 0.91669 0.90509 0.91280 0.91385 0.95910 0.94283 0.90048 0.87263 0.86623 0.85707 0.89000 0.89177 0.86346 0.90890 0.88508 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 60.06 0.55 0.77 16 2 N -0.54 -6.45 5.01 -252.72 -1.27 -7.71 16 3 C 0.02 0.23 9.57 60.06 0.57 0.80 16 4 C 0.10 1.19 5.11 -4.97 -0.03 1.16 16 5 C -0.08 -1.24 4.89 -104.67 -0.51 -1.75 16 6 C -0.13 -1.86 7.94 -39.52 -0.31 -2.17 16 7 C -0.12 -1.77 10.03 -39.63 -0.40 -2.17 16 8 C -0.12 -2.08 9.42 -39.26 -0.37 -2.45 16 9 C -0.01 -0.20 5.88 -104.89 -0.62 -0.82 16 10 C -0.04 -0.97 5.87 -104.97 -0.62 -1.59 16 11 C -0.22 -4.92 9.44 -38.97 -0.37 -5.29 16 12 C -0.11 -2.56 10.01 -39.71 -0.40 -2.96 16 13 C -0.15 -4.02 8.69 -38.82 -0.34 -4.36 16 14 C 0.11 2.83 5.57 -106.87 -0.60 2.24 16 15 C -0.47 -12.32 9.05 -37.74 -0.34 -12.67 16 16 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 17 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 18 N -0.80 -20.56 10.96 55.55 0.61 -19.95 16 19 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.20 -4.96 9.17 -38.53 -0.35 -5.32 16 24 C -0.10 -1.70 9.08 -39.26 -0.36 -2.05 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.08 0.91 6.15 -51.93 -0.32 0.59 16 28 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 33 H 0.11 1.25 8.01 -52.49 -0.42 0.83 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.13 2.17 6.20 -52.49 -0.33 1.85 16 36 H 0.09 1.84 6.18 -52.49 -0.32 1.52 16 37 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 40 H 0.10 2.22 6.19 -52.49 -0.32 1.90 16 41 H 0.12 2.08 6.19 -52.48 -0.32 1.76 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -27.90 334.97 -10.91 -38.81 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.70 Total: 6.98 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: -4.57 Total: -36.80 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: -0.66 Total: -27.67 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.90 -10.91 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236419175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.036 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds