Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99946 * 2 1 4 4 C 1.46905 * 110.99706 * 123.95494 * 2 1 3 5 5 C 1.50700 * 109.47466 * 66.04614 * 4 2 1 6 6 C 1.38342 * 119.93898 * 270.25493 * 5 4 2 7 7 C 1.38297 * 120.23953 * 180.25468 * 6 5 4 8 8 C 1.38044 * 120.12313 * 359.74003 * 7 6 5 9 9 C 1.39305 * 119.87586 * 0.02562 * 8 7 6 10 10 C 1.48413 * 120.12067 * 179.97438 * 9 8 7 11 11 C 1.39724 * 119.99995 * 179.74558 * 10 9 8 12 12 C 1.38395 * 120.37823 * 179.72614 * 11 10 9 13 13 C 1.37722 * 120.37574 * 0.55246 * 12 11 10 14 14 C 1.40749 * 119.98958 * 359.72503 * 13 12 11 15 15 C 1.41426 * 120.18279 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99623 * 204.47748 * 15 14 13 17 17 C 1.39923 * 120.00438 * 24.48715 * 15 14 13 18 18 N 1.30833 * 120.00177 * 17.89500 * 17 15 14 19 19 Si 1.86804 * 120.00180 * 197.89912 * 17 15 14 20 20 H 1.48497 * 109.46999 * 89.99795 * 19 17 15 21 21 H 1.48500 * 109.47182 * 209.99610 * 19 17 15 22 22 H 1.48495 * 109.46960 * 329.99648 * 19 17 15 23 23 C 1.38735 * 119.99661 * 0.02562 * 10 9 8 24 24 C 1.37996 * 119.94028 * 89.99774 * 5 4 2 25 25 H 1.09004 * 109.47225 * 296.04312 * 1 2 3 26 26 H 1.08997 * 109.46975 * 56.04594 * 1 2 3 27 27 H 1.09006 * 109.47170 * 176.04513 * 1 2 3 28 28 H 1.09005 * 109.46622 * 183.95050 * 3 2 1 29 29 H 1.08994 * 109.47192 * 303.95043 * 3 2 1 30 30 H 1.09001 * 109.47275 * 63.95605 * 3 2 1 31 31 H 1.08993 * 109.47156 * 306.04309 * 4 2 1 32 32 H 1.09000 * 109.47042 * 186.04504 * 4 2 1 33 33 H 1.07997 * 119.88030 * 359.97134 * 6 5 4 34 34 H 1.08007 * 119.93948 * 179.72161 * 7 6 5 35 35 H 1.07996 * 120.06025 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.81334 * 359.97438 * 11 10 9 37 37 H 1.07992 * 119.81049 * 180.28065 * 12 11 10 38 38 H 1.08002 * 120.00112 * 179.70885 * 13 12 11 39 39 H 0.96997 * 120.00697 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.18462 * 0.02562 * 23 10 9 41 41 H 1.08004 * 120.06099 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2205 0.9729 6 6 0.4473 -2.7012 1.4904 7 6 0.1146 -4.0360 1.3474 8 6 0.9663 -4.8949 0.6822 9 6 2.1631 -4.4151 0.1550 10 6 3.0831 -5.3338 -0.5607 11 6 4.2804 -4.8488 -1.0931 12 6 5.1466 -5.6997 -1.7570 13 6 4.8331 -7.0320 -1.9102 14 6 3.6285 -7.5361 -1.3851 15 6 3.3026 -8.9036 -1.5396 16 1 2.2701 -9.2193 -1.5112 17 6 4.3178 -9.8477 -1.7292 18 7 5.5541 -9.5497 -1.4216 19 14 3.9081 -11.5337 -2.4216 20 1 4.0062 -11.4976 -3.9029 21 1 4.8657 -12.5346 -1.8864 22 1 2.5270 -11.9089 -2.0258 23 6 2.7515 -6.6731 -0.7060 24 6 2.4933 -3.0692 0.3017 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0828 1.3431 -0.0708 29 1 1.5898 1.9162 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1757 33 1 -0.2217 -2.0328 2.0118 34 1 -0.8133 -4.4071 1.7572 35 1 0.7056 -5.9371 0.5715 36 1 4.5331 -3.8046 -0.9825 37 1 6.0717 -5.3160 -2.1610 38 1 5.5114 -7.6897 -2.4335 39 1 6.2579 -10.2040 -1.5533 40 1 1.8245 -7.0501 -0.2999 41 1 3.4199 -2.6920 -0.1052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236419175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = 27.730942 kcal Electronic energy + Delta-G solvation = -20627.808715 eV Core-core repulsion = 17664.078840 eV Total energy + Delta-G solvation = -2963.729875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68743 -39.18142 -37.80512 -35.63392 -33.27652 -32.57117 -31.67980 -29.56786 -28.42294 -27.73706 -27.05474 -24.12911 -23.76857 -22.58973 -21.81249 -20.99443 -19.02205 -17.83214 -17.03659 -16.52210 -16.46166 -16.37333 -16.14592 -15.60024 -15.41247 -14.78014 -14.69008 -14.44735 -13.94645 -13.89689 -13.66780 -13.31700 -13.16898 -13.08960 -12.83461 -12.77750 -12.65106 -12.57314 -12.34198 -12.17405 -12.04151 -11.78775 -11.45143 -11.15678 -11.06595 -10.24911 -9.70138 -9.42184 -9.23187 -8.68217 -8.59658 -6.36214 0.07487 0.51990 0.98093 1.34760 1.38389 1.51113 1.56767 2.20706 2.65282 2.93860 3.32578 3.77665 3.80118 3.92524 4.05096 4.23027 4.27408 4.36911 4.48214 4.49847 4.55452 4.60327 4.64854 4.71352 4.78258 4.79975 5.01120 5.04030 5.04871 5.07830 5.14310 5.17333 5.30239 5.39813 5.53516 5.64051 5.70402 5.76382 6.02026 6.05280 6.06936 6.12946 6.17115 6.22166 6.38510 6.67158 6.92931 7.00693 8.33533 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.003426 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.361359 B = 8171.767811 C = 8760.409538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.100 3.900 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.132 4.132 9 C -0.047 4.047 10 C -0.038 4.038 11 C -0.224 4.224 12 C -0.110 4.110 13 C -0.186 4.186 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.075 0.925 17 C 0.036 3.964 18 N -0.827 5.827 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.225 4.225 24 C -0.104 4.104 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.288 0.712 40 H 0.100 0.900 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 15.495 4.816 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.288 5.288 3 C -0.122 4.122 4 C -0.027 4.027 5 C -0.082 4.082 6 C -0.136 4.136 7 C -0.134 4.134 8 C -0.150 4.150 9 C -0.047 4.047 10 C -0.038 4.038 11 C -0.243 4.243 12 C -0.128 4.128 13 C -0.206 4.206 14 C 0.077 3.923 15 C -0.532 4.532 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.453 5.453 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.182 1.182 23 C -0.244 4.244 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.577 15.198 4.411 17.546 hybrid contribution 0.012 -0.796 0.273 0.841 sum -7.565 14.402 4.684 16.929 Atomic orbital electron populations 1.22465 0.86715 1.02381 1.01087 1.61923 1.09017 1.14719 1.43149 1.22417 1.00993 0.87575 1.01227 1.21017 1.00754 0.88718 0.92184 1.19809 0.94815 0.95517 0.98027 1.21271 0.96346 0.95564 1.00447 1.21282 0.99844 0.93584 0.98726 1.21412 0.94262 1.00339 0.99005 1.19098 0.94436 0.93559 0.97639 1.18711 0.94497 0.92671 0.97968 1.20786 0.96334 0.99007 1.08167 1.20929 0.98720 0.93701 0.99430 1.21384 0.99789 0.94610 1.04807 1.17903 0.91920 0.93635 0.88889 1.19809 0.94727 0.92218 1.46480 0.90726 1.26754 0.94007 1.04808 0.92339 1.69879 1.02391 1.38073 1.34952 0.85192 0.79459 0.75782 0.79195 1.18677 1.19157 1.18217 1.21248 1.02057 0.93728 1.07376 1.21137 1.00255 0.91935 0.98918 0.94396 0.90908 0.91930 0.91159 0.90642 0.94656 0.92389 0.89799 0.83789 0.83555 0.86666 0.86357 0.86779 0.87919 0.90122 0.88162 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.12 127.69 1.16 1.55 16 2 N -0.56 -11.68 5.01 -953.47 -4.78 -16.46 16 3 C 0.03 0.39 9.57 127.69 1.22 1.61 16 4 C 0.10 2.10 5.11 85.56 0.44 2.54 16 5 C -0.08 -2.17 4.89 -19.90 -0.10 -2.27 16 6 C -0.12 -2.83 7.94 22.31 0.18 -2.66 16 7 C -0.12 -3.13 10.03 22.24 0.22 -2.91 16 8 C -0.13 -4.61 9.42 22.48 0.21 -4.40 16 9 C -0.05 -1.85 5.88 -20.04 -0.12 -1.97 16 10 C -0.04 -1.80 5.87 -20.09 -0.12 -1.92 16 11 C -0.22 -10.23 9.44 22.67 0.21 -10.01 16 12 C -0.11 -5.29 10.01 22.18 0.22 -5.07 16 13 C -0.19 -10.20 8.69 22.76 0.20 -10.00 16 14 C 0.08 4.43 5.57 -21.32 -0.12 4.31 16 15 C -0.50 -28.01 9.05 23.46 0.21 -27.80 16 16 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 17 C 0.04 1.84 5.14 85.25 0.44 2.27 16 18 N -0.83 -44.32 10.96 21.82 0.24 -44.08 16 19 Si 0.98 39.06 29.60 68.60 2.03 41.09 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 C -0.22 -11.61 9.17 22.95 0.21 -11.40 16 24 C -0.10 -3.48 9.08 22.48 0.20 -3.28 16 25 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 27 H 0.06 1.28 6.15 -2.38 -0.01 1.27 16 28 H 0.07 1.05 8.12 -2.38 -0.02 1.03 16 29 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 30 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 32 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 33 H 0.14 2.52 8.01 -2.91 -0.02 2.49 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.12 4.14 6.20 -2.91 -0.02 4.12 16 36 H 0.12 4.67 6.18 -2.91 -0.02 4.65 16 37 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.10 5.82 6.15 -2.91 -0.02 5.80 16 39 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 40 H 0.10 4.91 6.19 -2.91 -0.02 4.89 16 41 H 0.12 3.98 6.19 -2.91 -0.02 3.96 16 Total: -1.00 -63.10 334.97 3.19 -59.91 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 1.02 Total: 30.95 kcal Atomic # 6 Polarization: -76.09 SS G_CDS: 4.68 Total: -71.40 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -4.54 Total: -60.54 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -63.10 3.19 -59.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236419175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.637 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds