Wall clock time and date at job start Tue Mar 31 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99718 * 2 1 4 4 C 1.46896 * 111.00013 * 123.95125 * 2 1 3 5 5 C 1.50701 * 109.47070 * 170.00423 * 4 2 1 6 6 C 1.38420 * 119.92426 * 270.23035 * 5 4 2 7 7 C 1.38363 * 120.28875 * 180.27649 * 6 5 4 8 8 C 1.37963 * 120.14453 * 359.49193 * 7 6 5 9 9 C 1.39575 * 119.85156 * 0.25498 * 8 7 6 10 10 C 1.47997 * 120.14282 * 179.97438 * 9 8 7 11 11 C 1.39937 * 119.87995 * 179.72384 * 10 9 8 12 12 C 1.36256 * 120.11395 * 179.75610 * 11 10 9 13 13 C 1.40930 * 119.88178 * 0.51363 * 12 11 10 14 14 C 1.41029 * 120.11541 * 179.71561 * 13 12 11 15 15 H 1.07996 * 119.99939 * 24.70453 * 14 13 12 16 16 C 1.40018 * 119.99536 * 204.70042 * 14 13 12 17 17 N 1.30792 * 120.00332 * 17.95413 * 16 14 13 18 18 Si 1.86800 * 119.99551 * 197.95105 * 16 14 13 19 19 H 1.48506 * 109.46934 * 90.00463 * 18 16 14 20 20 H 1.48500 * 109.46793 * 209.99746 * 18 16 14 21 21 H 1.48493 * 109.47419 * 330.00418 * 18 16 14 22 22 C 1.40926 * 119.76501 * 359.74112 * 13 12 11 23 23 C 1.36258 * 119.87461 * 359.97438 * 22 13 12 24 24 C 1.37913 * 119.93242 * 90.00195 * 5 4 2 25 25 H 1.08999 * 109.47129 * 296.04321 * 1 2 3 26 26 H 1.09001 * 109.47589 * 56.05095 * 1 2 3 27 27 H 1.09002 * 109.47133 * 176.04951 * 1 2 3 28 28 H 1.09003 * 109.46830 * 183.95293 * 3 2 1 29 29 H 1.08999 * 109.46707 * 303.95378 * 3 2 1 30 30 H 1.08997 * 109.47181 * 63.95406 * 3 2 1 31 31 H 1.08999 * 109.47671 * 50.00108 * 4 2 1 32 32 H 1.09005 * 109.47357 * 290.00326 * 4 2 1 33 33 H 1.08000 * 119.85440 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.92624 * 179.76736 * 7 6 5 35 35 H 1.07997 * 120.07225 * 180.27135 * 8 7 6 36 36 H 1.07995 * 119.93824 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.05679 * 180.24985 * 12 11 10 38 38 H 0.97003 * 120.00326 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.06387 * 179.97438 * 22 13 12 40 40 H 1.08005 * 119.93406 * 180.02562 * 23 22 13 41 41 H 1.08006 * 120.06761 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4818 -0.9523 0.9729 6 6 3.9683 -2.0570 0.2954 7 6 5.3316 -2.2386 0.1447 8 6 6.2150 -1.3130 0.6606 9 6 5.7309 -0.1942 1.3403 10 6 6.6728 0.8025 1.8967 11 6 6.1812 1.9252 2.5722 12 6 7.0442 2.8433 3.0907 13 6 8.4338 2.6662 2.9364 14 6 9.3313 3.6165 3.4659 15 1 9.0321 4.2370 4.2976 16 6 10.6103 3.7553 2.9133 17 7 10.8619 3.2830 1.7198 18 14 11.9573 4.6152 3.8806 19 1 12.6910 3.6182 4.7010 20 1 12.9000 5.2719 2.9398 21 1 11.3518 5.6387 4.7699 22 6 8.9232 1.5366 2.2506 23 6 8.0516 0.6216 1.7410 24 6 4.3541 -0.0196 1.4934 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0708 29 1 1.5897 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5090 -1.7406 1.1757 32 1 1.7975 -0.2247 2.0628 33 1 3.2807 -2.7824 -0.1139 34 1 5.7049 -3.1046 -0.3818 35 1 7.2788 -1.4536 0.5385 36 1 5.1160 2.0622 2.6857 37 1 6.6639 3.7073 3.6154 38 1 11.7481 3.3788 1.3371 39 1 9.9871 1.3963 2.1292 40 1 8.4257 -0.2448 1.2156 41 1 3.9731 0.8440 2.0183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236419607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:36 Heat of formation + Delta-G solvation = 39.353233 kcal Electronic energy + Delta-G solvation = -20691.004229 eV Core-core repulsion = 17727.778335 eV Total energy + Delta-G solvation = -2963.225895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.26181 -37.65641 -36.63427 -33.99143 -31.76434 -31.09971 -29.64175 -28.66674 -27.54909 -26.55034 -25.19911 -22.51264 -22.35774 -21.21488 -20.25946 -19.35513 -17.54112 -16.38071 -15.49792 -15.44307 -15.30859 -15.24522 -14.42603 -14.29340 -13.99417 -13.32070 -12.98744 -12.78321 -12.64678 -12.42688 -12.38137 -12.06822 -11.91044 -11.79344 -11.64076 -11.52957 -11.30072 -11.22946 -10.94289 -10.71533 -10.48936 -10.33807 -9.75817 -9.43053 -9.31663 -8.56264 -8.51556 -8.20092 -7.64351 -7.07897 -6.90239 -4.45263 1.64635 1.86564 2.76935 2.98098 3.01418 3.06073 3.18157 3.79507 3.97334 4.35798 4.70879 4.95239 5.08649 5.19149 5.31179 5.41908 5.50500 5.52760 5.63178 5.63772 5.69729 5.72122 5.74714 5.99466 6.05029 6.08722 6.20120 6.22098 6.54558 6.61334 6.82199 6.86895 6.90889 6.96085 7.00557 7.04779 7.11226 7.17059 7.35167 7.50808 7.53002 7.85188 7.92159 8.07064 8.14070 8.48143 8.70791 8.83226 9.97634 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.003471 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.799066 B = 8064.272578 C = 8708.223447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.097 3.903 5 C -0.074 4.074 6 C -0.140 4.140 7 C -0.112 4.112 8 C -0.143 4.143 9 C 0.023 3.977 10 C -0.205 4.205 11 C -0.063 4.063 12 C -0.231 4.231 13 C 0.119 3.881 14 C -0.448 4.448 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.778 5.778 18 Si 0.912 3.088 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.172 4.172 23 C -0.075 4.075 24 C -0.138 4.138 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.285 0.715 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.077 -5.669 -1.977 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.129 4.129 4 C -0.030 4.030 5 C -0.075 4.075 6 C -0.158 4.158 7 C -0.130 4.130 8 C -0.162 4.162 9 C 0.023 3.977 10 C -0.206 4.206 11 C -0.081 4.081 12 C -0.250 4.250 13 C 0.116 3.884 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.401 5.401 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.192 4.192 23 C -0.093 4.093 24 C -0.157 4.157 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.741 -5.883 -2.595 12.518 hybrid contribution 0.401 0.851 0.990 1.366 sum -10.339 -5.032 -1.605 11.610 Atomic orbital electron populations 1.22383 0.87668 1.01987 1.00345 1.61998 1.07162 1.14357 1.43009 1.22493 1.02275 0.88123 1.00005 1.21034 0.92352 0.98246 0.91383 1.19443 0.93740 0.95391 0.98889 1.20707 0.94980 0.98399 1.01756 1.20923 0.93341 0.98809 0.99942 1.21212 0.99483 0.94954 1.00507 1.18964 0.92396 0.93068 0.93286 1.18079 0.92134 0.98423 1.11997 1.20373 0.97135 0.93805 0.96814 1.20677 0.93554 1.00855 1.09939 1.17728 0.91248 0.90943 0.88460 1.19724 0.96696 1.16812 1.14375 0.90000 1.26031 0.99812 0.94585 0.94201 1.69815 1.23045 1.34573 1.12717 0.86242 0.79911 0.80000 0.80266 1.19034 1.20101 1.18412 1.21000 0.99178 0.94632 1.04355 1.20536 0.92417 0.97876 0.98497 1.21021 0.92670 0.99196 1.02774 0.95853 0.91452 0.91534 0.90178 0.91696 0.95728 0.90389 0.94251 0.87225 0.87018 0.86423 0.89162 0.88812 0.90429 0.86377 0.88971 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.57 60.06 0.57 0.81 16 2 N -0.54 -6.85 5.01 -252.72 -1.27 -8.12 16 3 C 0.02 0.24 9.13 60.07 0.55 0.79 16 4 C 0.10 1.25 5.11 -4.98 -0.03 1.22 16 5 C -0.07 -1.15 4.88 -104.67 -0.51 -1.66 16 6 C -0.14 -2.11 9.70 -39.47 -0.38 -2.49 16 7 C -0.11 -1.75 10.03 -39.64 -0.40 -2.15 16 8 C -0.14 -2.57 9.43 -39.18 -0.37 -2.94 16 9 C 0.02 0.45 5.88 -104.88 -0.62 -0.17 16 10 C -0.21 -4.59 5.90 -104.63 -0.62 -5.21 16 11 C -0.06 -1.41 9.36 -39.66 -0.37 -1.78 16 12 C -0.23 -5.55 9.73 -39.28 -0.38 -5.93 16 13 C 0.12 3.09 5.57 -106.80 -0.60 2.49 16 14 C -0.45 -11.43 9.03 -37.86 -0.34 -11.77 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.77 5.13 -17.33 -0.09 1.68 16 17 N -0.78 -19.30 10.96 55.55 0.61 -18.69 16 18 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.17 -4.38 8.63 -39.28 -0.34 -4.72 16 23 C -0.07 -1.74 9.36 -39.66 -0.37 -2.11 16 24 C -0.14 -2.42 7.34 -39.19 -0.29 -2.71 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 28 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 29 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 32 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.12 2.04 6.18 -52.49 -0.32 1.71 16 36 H 0.09 1.78 6.18 -52.49 -0.32 1.45 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 39 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 40 H 0.09 1.94 6.18 -52.48 -0.32 1.61 16 41 H 0.11 1.93 6.15 -52.48 -0.32 1.61 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -26.74 334.77 -10.92 -37.66 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.70 Total: 7.97 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: -4.57 Total: -36.63 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: -0.66 Total: -26.81 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.74 -10.92 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236419607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.010 kcal (2) G-P(sol) polarization free energy of solvation -26.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds