Wall clock time and date at job start Tue Mar 31 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99718 * 2 1 4 4 C 1.46896 * 111.00013 * 123.95125 * 2 1 3 5 5 C 1.50701 * 109.47070 * 170.00423 * 4 2 1 6 6 C 1.38420 * 119.92426 * 270.23035 * 5 4 2 7 7 C 1.38363 * 120.28875 * 180.27649 * 6 5 4 8 8 C 1.37963 * 120.14453 * 359.49193 * 7 6 5 9 9 C 1.39575 * 119.85156 * 0.25498 * 8 7 6 10 10 C 1.47997 * 120.14282 * 179.97438 * 9 8 7 11 11 C 1.39937 * 119.87995 * 179.72384 * 10 9 8 12 12 C 1.36256 * 120.11395 * 179.75610 * 11 10 9 13 13 C 1.40930 * 119.88178 * 0.51363 * 12 11 10 14 14 C 1.41029 * 120.11541 * 179.71561 * 13 12 11 15 15 H 1.07996 * 119.99939 * 24.70453 * 14 13 12 16 16 C 1.40018 * 119.99536 * 204.70042 * 14 13 12 17 17 N 1.30792 * 120.00332 * 17.95413 * 16 14 13 18 18 Si 1.86800 * 119.99551 * 197.95105 * 16 14 13 19 19 H 1.48506 * 109.46934 * 90.00463 * 18 16 14 20 20 H 1.48500 * 109.46793 * 209.99746 * 18 16 14 21 21 H 1.48493 * 109.47419 * 330.00418 * 18 16 14 22 22 C 1.40926 * 119.76501 * 359.74112 * 13 12 11 23 23 C 1.36258 * 119.87461 * 359.97438 * 22 13 12 24 24 C 1.37913 * 119.93242 * 90.00195 * 5 4 2 25 25 H 1.08999 * 109.47129 * 296.04321 * 1 2 3 26 26 H 1.09001 * 109.47589 * 56.05095 * 1 2 3 27 27 H 1.09002 * 109.47133 * 176.04951 * 1 2 3 28 28 H 1.09003 * 109.46830 * 183.95293 * 3 2 1 29 29 H 1.08999 * 109.46707 * 303.95378 * 3 2 1 30 30 H 1.08997 * 109.47181 * 63.95406 * 3 2 1 31 31 H 1.08999 * 109.47671 * 50.00108 * 4 2 1 32 32 H 1.09005 * 109.47357 * 290.00326 * 4 2 1 33 33 H 1.08000 * 119.85440 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.92624 * 179.76736 * 7 6 5 35 35 H 1.07997 * 120.07225 * 180.27135 * 8 7 6 36 36 H 1.07995 * 119.93824 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.05679 * 180.24985 * 12 11 10 38 38 H 0.97003 * 120.00326 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.06387 * 179.97438 * 22 13 12 40 40 H 1.08005 * 119.93406 * 180.02562 * 23 22 13 41 41 H 1.08006 * 120.06761 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4818 -0.9523 0.9729 6 6 3.9683 -2.0570 0.2954 7 6 5.3316 -2.2386 0.1447 8 6 6.2150 -1.3130 0.6606 9 6 5.7309 -0.1942 1.3403 10 6 6.6728 0.8025 1.8967 11 6 6.1812 1.9252 2.5722 12 6 7.0442 2.8433 3.0907 13 6 8.4338 2.6662 2.9364 14 6 9.3313 3.6165 3.4659 15 1 9.0321 4.2370 4.2976 16 6 10.6103 3.7553 2.9133 17 7 10.8619 3.2830 1.7198 18 14 11.9573 4.6152 3.8806 19 1 12.6910 3.6182 4.7010 20 1 12.9000 5.2719 2.9398 21 1 11.3518 5.6387 4.7699 22 6 8.9232 1.5366 2.2506 23 6 8.0516 0.6216 1.7410 24 6 4.3541 -0.0196 1.4934 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0708 29 1 1.5897 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5090 -1.7406 1.1757 32 1 1.7975 -0.2247 2.0628 33 1 3.2807 -2.7824 -0.1139 34 1 5.7049 -3.1046 -0.3818 35 1 7.2788 -1.4536 0.5385 36 1 5.1160 2.0622 2.6857 37 1 6.6639 3.7073 3.6154 38 1 11.7481 3.3788 1.3371 39 1 9.9871 1.3963 2.1292 40 1 8.4257 -0.2448 1.2156 41 1 3.9731 0.8440 2.0183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236419607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:35 Heat of formation + Delta-G solvation = 27.074882 kcal Electronic energy + Delta-G solvation = -20691.536659 eV Core-core repulsion = 17727.778335 eV Total energy + Delta-G solvation = -2963.758324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62426 -39.23722 -37.80820 -35.73982 -33.25178 -32.46613 -31.40992 -30.32123 -28.48240 -27.64496 -26.91055 -23.91149 -23.74028 -22.60296 -21.89133 -20.82193 -19.36535 -17.84272 -17.05990 -16.65426 -16.44232 -16.37311 -15.83340 -15.60230 -15.45798 -14.77699 -14.58405 -14.42775 -14.08436 -13.89950 -13.51716 -13.45569 -13.20164 -13.03214 -12.87526 -12.82637 -12.68774 -12.54986 -12.40073 -12.30941 -11.87477 -11.80819 -11.46840 -11.16553 -11.08242 -10.14038 -9.68513 -9.50763 -9.25467 -8.82151 -8.63961 -6.34418 0.16417 0.56570 1.13550 1.20187 1.37202 1.50762 1.59109 2.16913 2.60909 2.96944 3.33572 3.77239 3.86485 3.99488 4.10120 4.23231 4.28463 4.37577 4.45175 4.50257 4.51635 4.61832 4.64063 4.70567 4.79792 4.80966 4.97578 5.03729 5.05467 5.06846 5.18207 5.24320 5.31356 5.36097 5.61944 5.64437 5.74568 5.77612 5.95742 6.02903 6.04812 6.13109 6.28065 6.28877 6.30320 6.61328 6.84100 6.96660 8.23234 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.003471 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.799066 B = 8064.272578 C = 8708.223447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.021 3.979 4 C 0.099 3.901 5 C -0.075 4.075 6 C -0.127 4.127 7 C -0.111 4.111 8 C -0.152 4.152 9 C -0.013 4.013 10 C -0.198 4.198 11 C -0.070 4.070 12 C -0.245 4.245 13 C 0.087 3.913 14 C -0.488 4.488 15 H 0.080 0.920 16 C 0.034 3.966 17 N -0.814 5.814 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.256 1.256 22 C -0.193 4.193 23 C -0.085 4.085 24 C -0.137 4.137 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.292 0.708 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 -7.215 -2.597 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.127 4.127 4 C -0.028 4.028 5 C -0.076 4.076 6 C -0.145 4.145 7 C -0.129 4.129 8 C -0.171 4.171 9 C -0.013 4.013 10 C -0.199 4.199 11 C -0.088 4.088 12 C -0.265 4.265 13 C 0.084 3.916 14 C -0.516 4.516 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.439 5.439 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.180 1.180 22 C -0.213 4.213 23 C -0.103 4.103 24 C -0.156 4.156 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.901 -7.439 -3.221 15.237 hybrid contribution 0.769 1.106 1.039 1.701 sum -12.132 -6.333 -2.182 13.858 Atomic orbital electron populations 1.22455 0.85652 1.03214 1.01014 1.61996 1.08997 1.13919 1.42803 1.22435 1.00709 0.88844 1.00752 1.21058 0.90563 0.99565 0.91637 1.19768 0.95151 0.94786 0.97891 1.21159 0.95298 0.98231 0.99844 1.21267 0.93379 0.99018 0.99259 1.21357 1.00091 0.95072 1.00542 1.18963 0.92909 0.93715 0.95750 1.18457 0.92376 0.98703 1.10364 1.20645 0.98258 0.93500 0.96435 1.20879 0.93346 1.01725 1.10532 1.18058 0.92347 0.91617 0.89558 1.19932 0.98305 1.17978 1.15414 0.90141 1.26874 1.01511 0.95026 0.94801 1.69861 1.23961 1.35973 1.14057 0.85137 0.76674 0.78822 0.78726 1.18560 1.19036 1.18009 1.20980 0.98850 0.95566 1.05879 1.20767 0.92949 0.98098 0.98529 1.21092 0.92090 0.99720 1.02650 0.95331 0.90616 0.90082 0.92738 0.90520 0.95424 0.88163 0.94157 0.84116 0.83925 0.86572 0.86674 0.88100 0.89718 0.87836 0.87291 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.57 127.69 1.22 1.61 16 2 N -0.55 -12.23 5.01 -953.46 -4.78 -17.01 16 3 C 0.02 0.49 9.13 127.69 1.17 1.66 16 4 C 0.10 2.20 5.11 85.56 0.44 2.64 16 5 C -0.08 -2.12 4.88 -19.90 -0.10 -2.22 16 6 C -0.13 -3.32 9.70 22.34 0.22 -3.10 16 7 C -0.11 -3.12 10.03 22.23 0.22 -2.89 16 8 C -0.15 -5.27 9.43 22.53 0.21 -5.06 16 9 C -0.01 -0.52 5.88 -20.03 -0.12 -0.64 16 10 C -0.20 -9.02 5.90 -19.87 -0.12 -9.14 16 11 C -0.07 -3.21 9.36 22.22 0.21 -3.01 16 12 C -0.25 -12.29 9.73 22.47 0.22 -12.08 16 13 C 0.09 4.74 5.57 -21.28 -0.12 4.63 16 14 C -0.49 -26.20 9.03 23.39 0.21 -25.99 16 15 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 16 C 0.03 1.72 5.13 85.28 0.44 2.15 16 17 N -0.81 -42.15 10.96 21.84 0.24 -41.91 16 18 Si 0.99 37.40 29.60 68.60 2.03 39.43 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 20 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 22 C -0.19 -10.37 8.63 22.47 0.19 -10.17 16 23 C -0.09 -4.11 9.36 22.22 0.21 -3.91 16 24 C -0.14 -4.62 7.34 22.53 0.17 -4.46 16 25 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 27 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.05 1.57 6.16 -2.39 -0.01 1.55 16 29 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.81 8.01 -2.39 -0.02 1.79 16 32 H 0.04 0.90 8.06 -2.38 -0.02 0.88 16 33 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.12 3.96 6.18 -2.91 -0.02 3.94 16 36 H 0.12 4.54 6.18 -2.91 -0.02 4.53 16 37 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 39 H 0.10 5.73 6.16 -2.91 -0.02 5.72 16 40 H 0.11 4.72 6.18 -2.91 -0.02 4.70 16 41 H 0.11 3.74 6.15 -2.91 -0.02 3.72 16 Total: -1.00 -60.10 334.77 3.18 -56.92 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 1.02 Total: 32.54 kcal Atomic # 6 Polarization: -74.64 SS G_CDS: 4.67 Total: -69.97 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -4.54 Total: -58.92 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -60.10 3.18 -56.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236419607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.991 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds