Wall clock time and date at job start Tue Mar 31 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47433 * 2 1 4 4 N 1.46503 * 109.46835 * 120.00183 * 2 1 3 5 5 C 1.39321 * 120.00363 * 84.99745 * 4 2 1 6 6 C 1.39182 * 119.93152 * 359.72269 * 5 4 2 7 7 C 1.37693 * 120.06924 * 179.76229 * 6 5 4 8 8 C 1.39744 * 119.92858 * 0.53718 * 7 6 5 9 9 C 1.47833 * 120.06749 * 179.69777 * 8 7 6 10 10 C 1.40020 * 119.89025 * 179.74878 * 9 8 7 11 11 C 1.36198 * 120.11836 * 179.71898 * 10 9 8 12 12 C 1.40962 * 119.88103 * 0.57242 * 11 10 9 13 13 C 1.40978 * 120.11544 * 179.67443 * 12 11 10 14 14 H 1.07990 * 120.00462 * 204.71931 * 13 12 11 15 15 C 1.39969 * 119.99561 * 24.72182 * 13 12 11 16 16 N 1.30834 * 119.99717 * 17.97890 * 15 13 12 17 17 Si 1.86792 * 119.99980 * 197.97106 * 15 13 12 18 18 H 1.48500 * 109.47332 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47067 * 120.00226 * 17 15 13 20 20 H 1.48496 * 109.47515 * 240.00026 * 17 15 13 21 21 C 1.40966 * 119.77861 * 359.70270 * 12 11 10 22 22 C 1.36205 * 119.88131 * 359.97438 * 21 12 11 23 23 C 1.39746 * 119.86564 * 359.71507 * 8 7 6 24 24 C 1.37693 * 119.93359 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47258 * 300.00642 * 1 2 3 26 26 H 1.09001 * 109.46904 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46995 * 239.99788 * 2 1 3 29 29 H 1.09002 * 109.47330 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46938 * 299.99811 * 3 2 1 31 31 H 1.08998 * 109.47423 * 59.99459 * 3 2 1 32 32 H 0.97000 * 119.99577 * 264.99771 * 4 2 1 33 33 H 1.08005 * 119.96118 * 0.02562 * 6 5 4 34 34 H 1.07999 * 120.03313 * 180.23319 * 7 6 5 35 35 H 1.08005 * 119.94207 * 359.97438 * 10 9 8 36 36 H 1.07993 * 120.06142 * 180.25496 * 11 10 9 37 37 H 0.97000 * 119.99454 * 180.02562 * 16 15 13 38 38 H 1.07994 * 120.06106 * 180.02562 * 21 12 11 39 39 H 1.07995 * 119.94286 * 180.02562 * 22 21 12 40 40 H 1.08003 * 120.03532 * 180.02562 * 23 8 7 41 41 H 1.07998 * 119.96728 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1513 -2.0775 1.1944 6 6 1.8144 -2.8060 0.0573 7 6 1.9493 -4.1763 0.0508 8 6 2.4145 -4.8365 1.1912 9 6 2.5543 -6.3082 1.1898 10 6 3.0257 -6.9655 2.3327 11 6 3.1508 -8.3217 2.3385 12 6 2.8162 -9.0627 1.1870 13 6 2.9504 -10.4661 1.1852 14 1 3.0891 -10.9941 0.2535 15 6 2.9037 -11.1750 2.3911 16 7 2.3961 -10.6157 3.4595 17 14 3.5659 -12.9196 2.4752 18 1 4.0825 -13.3179 1.1411 19 1 4.6659 -12.9841 3.4708 20 1 2.4766 -13.8437 2.8807 21 6 2.3475 -8.3957 0.0369 22 6 2.2197 -7.0397 0.0436 23 6 2.7470 -4.1028 2.3331 24 6 2.6149 -2.7322 2.3317 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.2490 -0.1823 1.9895 33 1 1.4507 -2.2955 -0.8222 34 1 1.6913 -4.7407 -0.8331 35 1 3.2867 -6.3963 3.2128 36 1 3.5106 -8.8280 3.2219 37 1 2.3642 -11.1069 4.2953 38 1 2.0895 -8.9590 -0.8477 39 1 1.8604 -6.5278 -0.8367 40 1 3.1071 -4.6102 3.2159 41 1 2.8713 -2.1646 3.2140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236483238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:28 Heat of formation + Delta-G solvation = 30.648540 kcal Electronic energy + Delta-G solvation = -20338.265866 eV Core-core repulsion = 17374.662508 eV Total energy + Delta-G solvation = -2963.603359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.23960 -37.67002 -36.27035 -33.86014 -32.18546 -30.69241 -29.95523 -29.29745 -27.61045 -27.26292 -24.69230 -22.94945 -22.01106 -20.93372 -20.11696 -19.55144 -17.58290 -17.11455 -15.91422 -15.57891 -15.23011 -14.74632 -14.22756 -13.92403 -13.61427 -13.20851 -13.12185 -12.98237 -12.74628 -12.58047 -12.46441 -12.25632 -11.95955 -11.88908 -11.60812 -11.44462 -11.18834 -11.10334 -10.96609 -10.70884 -10.41222 -10.37484 -9.76934 -9.65285 -9.31139 -9.11252 -8.42919 -7.74139 -7.53532 -6.87993 -6.51088 -4.33084 1.85357 1.98514 2.83566 3.03449 3.09036 3.14539 3.27720 3.57125 3.86864 4.36641 4.67675 4.78395 4.90975 5.03386 5.35048 5.36077 5.41886 5.52176 5.58422 5.69843 5.73996 5.80780 5.86767 5.96511 6.00052 6.13167 6.23440 6.26566 6.39790 6.63995 6.71030 6.88045 6.98845 7.02852 7.12322 7.25721 7.34745 7.45978 7.61312 7.70289 7.91768 8.02097 8.02110 8.18151 8.24451 8.58291 8.81384 8.93983 10.07839 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.051617 B = 0.002879 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.325573 B = 9724.223656 C =10041.149373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 C -0.159 4.159 4 N -0.751 5.751 5 C 0.178 3.822 6 C -0.187 4.187 7 C -0.098 4.098 8 C -0.032 4.032 9 C -0.189 4.189 10 C -0.082 4.082 11 C -0.170 4.170 12 C 0.115 3.885 13 C -0.451 4.451 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.783 5.783 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.229 4.229 22 C -0.071 4.071 23 C -0.096 4.096 24 C -0.185 4.185 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.392 0.608 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.282 0.718 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 15.988 -2.937 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.040 3.960 3 C -0.217 4.217 4 N -0.383 5.383 5 C 0.078 3.922 6 C -0.209 4.209 7 C -0.117 4.117 8 C -0.034 4.034 9 C -0.190 4.190 10 C -0.101 4.101 11 C -0.190 4.190 12 C 0.112 3.888 13 C -0.480 4.480 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.407 5.407 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.249 4.249 22 C -0.089 4.089 23 C -0.114 4.114 24 C -0.207 4.207 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.226 0.774 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.988 15.978 -2.875 16.265 hybrid contribution 0.211 -0.592 0.497 0.801 sum -0.777 15.387 -2.377 15.589 Atomic orbital electron populations 1.22311 0.96345 1.02593 1.01559 1.20773 0.93426 0.92549 0.89274 1.22046 1.01607 0.95620 1.02384 1.44475 1.74938 1.03412 1.15441 1.17679 0.97100 0.83165 0.94283 1.20466 1.09010 0.94140 0.97280 1.20970 0.99504 0.93164 0.98025 1.18816 0.98548 0.93154 0.92878 1.18075 1.15070 0.89894 0.95991 1.20523 0.99163 0.94706 0.95666 1.20983 1.05664 0.92255 1.00061 1.17709 0.86856 0.93235 0.90973 1.19666 1.42418 0.92167 0.93746 0.90157 1.25997 0.92587 1.00864 0.95098 1.69851 1.30594 1.38624 1.01644 0.86241 0.79404 0.81331 0.79688 1.18271 1.19579 1.19885 1.20673 1.10765 0.93744 0.99702 1.20377 0.98784 0.94003 0.95772 1.20969 0.99719 0.92666 0.98055 1.20385 1.08522 0.94705 0.97074 0.92669 0.92301 0.92008 0.90587 0.92141 0.91415 0.92391 0.77402 0.87066 0.86517 0.89139 0.86487 0.90689 0.88929 0.89120 0.86374 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.41 37.16 0.35 -1.20 16 2 C 0.15 1.38 2.87 -67.93 -0.20 1.19 16 3 C -0.16 -1.14 9.38 37.15 0.35 -0.79 16 4 N -0.75 -8.56 5.23 -52.12 -0.27 -8.83 16 5 C 0.18 2.63 6.64 -83.76 -0.56 2.08 16 6 C -0.19 -2.91 8.80 -39.43 -0.35 -3.26 16 7 C -0.10 -1.75 9.42 -39.22 -0.37 -2.12 16 8 C -0.03 -0.65 5.88 -104.85 -0.62 -1.26 16 9 C -0.19 -4.33 5.90 -104.64 -0.62 -4.94 16 10 C -0.08 -1.95 9.36 -39.65 -0.37 -2.33 16 11 C -0.17 -4.43 8.63 -39.28 -0.34 -4.77 16 12 C 0.11 3.06 5.57 -106.79 -0.60 2.46 16 13 C -0.45 -11.81 9.03 -37.90 -0.34 -12.15 16 14 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.82 5.13 -17.33 -0.09 1.73 16 16 N -0.78 -19.92 10.96 55.55 0.61 -19.31 16 17 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 18 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.23 -5.66 9.73 -39.28 -0.38 -6.04 16 22 C -0.07 -1.63 9.36 -39.64 -0.37 -2.00 16 23 C -0.10 -1.73 9.42 -39.22 -0.37 -2.10 16 24 C -0.18 -2.89 9.87 -39.43 -0.39 -3.28 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 28 H 0.08 0.77 6.48 -51.93 -0.34 0.44 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.39 3.86 8.61 -40.82 -0.35 3.51 16 33 H 0.11 1.50 6.05 -52.48 -0.32 1.18 16 34 H 0.12 1.98 6.17 -52.49 -0.32 1.65 16 35 H 0.09 1.94 6.17 -52.48 -0.32 1.62 16 36 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 37 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.09 1.82 6.17 -52.49 -0.32 1.50 16 40 H 0.12 2.07 6.17 -52.48 -0.32 1.75 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -27.70 334.15 -10.44 -38.14 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.53 Total: 10.54 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: -5.25 Total: -38.80 kcal Atomic # 7 Polarization: -28.48 SS G_CDS: 0.34 Total: -28.15 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.70 -10.44 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236483238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.786 kcal (2) G-P(sol) polarization free energy of solvation -27.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds