Wall clock time and date at job start Tue Mar 31 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47433 * 2 1 4 4 N 1.46503 * 109.46835 * 120.00183 * 2 1 3 5 5 C 1.39321 * 120.00363 * 84.99745 * 4 2 1 6 6 C 1.39182 * 119.93152 * 359.72269 * 5 4 2 7 7 C 1.37693 * 120.06924 * 179.76229 * 6 5 4 8 8 C 1.39744 * 119.92858 * 0.53718 * 7 6 5 9 9 C 1.47833 * 120.06749 * 179.69777 * 8 7 6 10 10 C 1.40020 * 119.89025 * 179.74878 * 9 8 7 11 11 C 1.36198 * 120.11836 * 179.71898 * 10 9 8 12 12 C 1.40962 * 119.88103 * 0.57242 * 11 10 9 13 13 C 1.40978 * 120.11544 * 179.67443 * 12 11 10 14 14 H 1.07990 * 120.00462 * 204.71931 * 13 12 11 15 15 C 1.39969 * 119.99561 * 24.72182 * 13 12 11 16 16 N 1.30834 * 119.99717 * 17.97890 * 15 13 12 17 17 Si 1.86792 * 119.99980 * 197.97106 * 15 13 12 18 18 H 1.48500 * 109.47332 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47067 * 120.00226 * 17 15 13 20 20 H 1.48496 * 109.47515 * 240.00026 * 17 15 13 21 21 C 1.40966 * 119.77861 * 359.70270 * 12 11 10 22 22 C 1.36205 * 119.88131 * 359.97438 * 21 12 11 23 23 C 1.39746 * 119.86564 * 359.71507 * 8 7 6 24 24 C 1.37693 * 119.93359 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47258 * 300.00642 * 1 2 3 26 26 H 1.09001 * 109.46904 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46995 * 239.99788 * 2 1 3 29 29 H 1.09002 * 109.47330 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46938 * 299.99811 * 3 2 1 31 31 H 1.08998 * 109.47423 * 59.99459 * 3 2 1 32 32 H 0.97000 * 119.99577 * 264.99771 * 4 2 1 33 33 H 1.08005 * 119.96118 * 0.02562 * 6 5 4 34 34 H 1.07999 * 120.03313 * 180.23319 * 7 6 5 35 35 H 1.08005 * 119.94207 * 359.97438 * 10 9 8 36 36 H 1.07993 * 120.06142 * 180.25496 * 11 10 9 37 37 H 0.97000 * 119.99454 * 180.02562 * 16 15 13 38 38 H 1.07994 * 120.06106 * 180.02562 * 21 12 11 39 39 H 1.07995 * 119.94286 * 180.02562 * 22 21 12 40 40 H 1.08003 * 120.03532 * 180.02562 * 23 8 7 41 41 H 1.07998 * 119.96728 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1513 -2.0775 1.1944 6 6 1.8144 -2.8060 0.0573 7 6 1.9493 -4.1763 0.0508 8 6 2.4145 -4.8365 1.1912 9 6 2.5543 -6.3082 1.1898 10 6 3.0257 -6.9655 2.3327 11 6 3.1508 -8.3217 2.3385 12 6 2.8162 -9.0627 1.1870 13 6 2.9504 -10.4661 1.1852 14 1 3.0891 -10.9941 0.2535 15 6 2.9037 -11.1750 2.3911 16 7 2.3961 -10.6157 3.4595 17 14 3.5659 -12.9196 2.4752 18 1 4.0825 -13.3179 1.1411 19 1 4.6659 -12.9841 3.4708 20 1 2.4766 -13.8437 2.8807 21 6 2.3475 -8.3957 0.0369 22 6 2.2197 -7.0397 0.0436 23 6 2.7470 -4.1028 2.3331 24 6 2.6149 -2.7322 2.3317 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.2490 -0.1823 1.9895 33 1 1.4507 -2.2955 -0.8222 34 1 1.6913 -4.7407 -0.8331 35 1 3.2867 -6.3963 3.2128 36 1 3.5106 -8.8280 3.2219 37 1 2.3642 -11.1069 4.2953 38 1 2.0895 -8.9590 -0.8477 39 1 1.8604 -6.5278 -0.8367 40 1 3.1071 -4.6102 3.2159 41 1 2.8713 -2.1646 3.2140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236483238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:27 Heat of formation + Delta-G solvation = 18.200165 kcal Electronic energy + Delta-G solvation = -20338.805668 eV Core-core repulsion = 17374.662508 eV Total energy + Delta-G solvation = -2964.143161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55825 -39.28542 -37.45782 -35.59641 -33.44490 -32.17469 -31.45542 -31.03586 -29.00271 -28.02140 -26.35286 -24.28921 -23.50099 -22.35843 -21.66310 -20.90197 -19.33648 -18.42648 -17.38042 -16.87906 -16.71429 -16.01519 -15.49589 -15.26229 -14.85967 -14.69996 -14.59319 -14.31871 -14.22014 -13.87479 -13.70320 -13.51740 -13.27058 -13.05137 -12.93945 -12.78039 -12.68361 -12.36399 -12.24827 -11.98929 -11.94508 -11.71165 -11.44512 -11.20209 -11.06004 -10.78418 -9.74831 -9.46093 -9.34172 -8.68909 -7.94245 -6.24645 0.33749 0.66790 1.19073 1.25253 1.38379 1.53709 1.63682 2.19826 2.61455 2.68942 3.21673 3.83933 3.94901 4.06044 4.17067 4.22680 4.31830 4.37016 4.44132 4.52734 4.66909 4.70082 4.78304 4.83726 4.93444 4.98647 5.02565 5.12497 5.15642 5.25806 5.28294 5.32212 5.40266 5.41501 5.52185 5.57262 5.70855 5.85716 5.98909 6.10844 6.14986 6.35824 6.38441 6.59821 6.67721 6.90502 6.98693 7.03938 8.29241 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.051617 B = 0.002879 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.325573 B = 9724.223656 C =10041.149373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 C -0.152 4.152 4 N -0.739 5.739 5 C 0.198 3.802 6 C -0.193 4.193 7 C -0.095 4.095 8 C -0.078 4.078 9 C -0.177 4.177 10 C -0.094 4.094 11 C -0.191 4.191 12 C 0.080 3.920 13 C -0.491 4.491 14 H 0.078 0.922 15 C 0.033 3.967 16 N -0.819 5.819 17 Si 0.985 3.015 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.244 4.244 22 C -0.081 4.081 23 C -0.097 4.097 24 C -0.192 4.192 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.290 0.710 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 18.921 -3.445 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.370 5.370 5 C 0.095 3.905 6 C -0.215 4.215 7 C -0.114 4.114 8 C -0.080 4.080 9 C -0.179 4.179 10 C -0.113 4.113 11 C -0.211 4.211 12 C 0.078 3.922 13 C -0.520 4.520 14 H 0.096 0.904 15 C -0.183 4.183 16 N -0.445 5.445 17 Si 0.806 3.194 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.189 1.189 21 C -0.263 4.263 22 C -0.099 4.099 23 C -0.116 4.116 24 C -0.214 4.214 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.239 0.761 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.197 18.976 -3.389 19.313 hybrid contribution 0.200 -1.032 0.603 1.212 sum -0.998 17.944 -2.786 18.186 Atomic orbital electron populations 1.22274 0.95834 1.01637 1.02728 1.20995 0.93757 0.93783 0.88082 1.21998 1.01487 0.93895 1.03630 1.44652 1.73478 1.02149 1.16712 1.17838 0.94473 0.84742 0.93491 1.20678 1.08982 0.93351 0.98529 1.21091 0.98602 0.94280 0.97390 1.18767 1.02672 0.91614 0.94950 1.18472 1.12303 0.91923 0.95156 1.20756 0.99379 0.94146 0.96976 1.20964 1.07115 0.93247 0.99761 1.18047 0.88210 0.94057 0.91922 1.19863 1.45046 0.92511 0.94596 0.90399 1.26854 0.92106 1.05124 0.94209 1.69899 1.31601 1.40608 1.02373 0.85114 0.78850 0.75798 0.79682 1.18069 1.18783 1.18899 1.20890 1.11029 0.94803 0.99593 1.20679 0.98683 0.93502 0.96993 1.21071 0.99257 0.93875 0.97401 1.20617 1.08429 0.93879 0.98474 0.92373 0.90396 0.93961 0.90960 0.92278 0.89835 0.91556 0.76144 0.84750 0.86044 0.87438 0.88022 0.89947 0.88214 0.86341 0.86586 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.41 71.98 0.68 -1.78 16 2 C 0.14 2.10 2.87 44.99 0.13 2.23 16 3 C -0.15 -1.55 9.38 71.98 0.68 -0.88 16 4 N -0.74 -14.04 5.23 -318.81 -1.67 -15.71 16 5 C 0.20 5.23 6.64 38.40 0.25 5.49 16 6 C -0.19 -5.50 8.80 22.37 0.20 -5.30 16 7 C -0.10 -3.25 9.42 22.50 0.21 -3.04 16 8 C -0.08 -3.09 5.88 -20.01 -0.12 -3.20 16 9 C -0.18 -8.25 5.90 -19.87 -0.12 -8.37 16 10 C -0.09 -4.65 9.36 22.23 0.21 -4.45 16 11 C -0.19 -10.52 8.63 22.46 0.19 -10.33 16 12 C 0.08 4.49 5.57 -21.27 -0.12 4.37 16 13 C -0.49 -27.08 9.03 23.36 0.21 -26.87 16 14 H 0.08 4.13 7.91 -2.92 -0.02 4.10 16 15 C 0.03 1.67 5.13 85.26 0.44 2.11 16 16 N -0.82 -43.56 10.96 21.83 0.24 -43.32 16 17 Si 0.99 38.48 29.60 68.60 2.03 40.51 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 C -0.24 -12.50 9.73 22.46 0.22 -12.28 16 22 C -0.08 -3.75 9.36 22.23 0.21 -3.54 16 23 C -0.10 -3.43 9.42 22.51 0.21 -3.22 16 24 C -0.19 -5.51 9.87 22.37 0.22 -5.29 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.04 0.80 7.65 -2.39 -0.02 0.78 16 28 H 0.07 1.19 6.48 -2.39 -0.02 1.18 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.40 6.25 8.61 -92.71 -0.80 5.45 16 33 H 0.13 3.18 6.05 -2.91 -0.02 3.16 16 34 H 0.12 3.93 6.17 -2.91 -0.02 3.92 16 35 H 0.11 4.76 6.17 -2.91 -0.02 4.74 16 36 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 37 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.12 4.71 6.17 -2.91 -0.02 4.69 16 40 H 0.12 4.03 6.17 -2.91 -0.02 4.01 16 41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -62.64 334.15 4.55 -58.09 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.25 Total: 34.78 kcal Atomic # 6 Polarization: -78.05 SS G_CDS: 3.70 Total: -74.35 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -1.43 Total: -59.03 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -62.64 4.55 -58.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236483238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.292 kcal (2) G-P(sol) polarization free energy of solvation -62.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds