Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46887 * 2 1 4 4 N 1.46504 * 109.47276 * 119.99951 * 2 1 3 5 5 C 1.39317 * 119.99850 * 155.00182 * 4 2 1 6 6 C 1.39180 * 119.92625 * 359.72490 * 5 4 2 7 7 C 1.37694 * 120.06876 * 179.72128 * 6 5 4 8 8 C 1.39790 * 119.92358 * 0.57420 * 7 6 5 9 9 C 1.47719 * 120.06900 * 179.71987 * 8 7 6 10 10 C 1.39275 * 120.34286 * 129.70442 * 9 8 7 11 11 C 1.38005 * 119.97460 * 179.72751 * 10 9 8 12 12 C 1.38973 * 120.68703 * 0.55138 * 11 10 9 13 13 C 1.36392 * 120.70850 * 359.72375 * 12 11 10 14 14 C 1.40771 * 119.99073 * 359.97438 * 13 12 11 15 15 C 1.40828 * 120.33397 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99257 * 153.82337 * 15 14 13 17 17 C 1.40026 * 120.00285 * 333.82066 * 15 14 13 18 18 N 1.30796 * 119.99921 * 344.17877 * 17 15 14 19 19 Si 1.86804 * 119.99814 * 164.17730 * 17 15 14 20 20 H 1.48503 * 109.47124 * 60.00281 * 19 17 15 21 21 H 1.48500 * 109.47023 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47287 * 300.00001 * 19 17 15 23 23 C 1.39786 * 119.86057 * 359.70026 * 8 7 6 24 24 C 1.37687 * 119.92321 * 359.97438 * 23 8 7 25 25 H 1.08999 * 109.46993 * 299.99726 * 1 2 3 26 26 H 1.08997 * 109.47725 * 60.00209 * 1 2 3 27 27 H 1.09007 * 109.46689 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46993 * 240.00274 * 2 1 3 29 29 H 1.09011 * 109.47307 * 300.00239 * 3 2 1 30 30 H 1.09002 * 109.47501 * 59.99697 * 3 2 1 31 31 H 1.08995 * 109.47305 * 180.02562 * 3 2 1 32 32 H 0.97006 * 119.99949 * 335.00135 * 4 2 1 33 33 H 1.07994 * 119.96488 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.03188 * 180.27565 * 7 6 5 35 35 H 1.08001 * 120.01262 * 359.97155 * 10 9 8 36 36 H 1.08004 * 119.65307 * 180.28062 * 11 10 9 37 37 H 1.08004 * 119.64617 * 179.74691 * 12 11 10 38 38 H 1.07996 * 120.00480 * 179.97438 * 13 12 11 39 39 H 0.97004 * 120.00107 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.04247 * 180.02562 * 23 8 7 41 41 H 1.08000 * 119.96054 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2816 -1.2783 1.1943 6 6 4.0759 -1.2133 0.0533 7 6 5.3271 -1.7881 0.0500 8 6 5.7944 -2.4478 1.1905 9 6 7.1337 -3.0709 1.1885 10 6 8.0336 -2.8081 2.2185 11 6 9.2808 -3.3988 2.2119 12 6 9.6575 -4.2489 1.1791 13 6 8.8006 -4.5213 0.1536 14 6 7.5189 -3.9396 0.1342 15 6 6.6284 -4.2155 -0.9214 16 1 5.5627 -4.1452 -0.7611 17 6 7.1248 -4.5808 -2.1787 18 7 8.3824 -4.3718 -2.4713 19 14 5.9909 -5.3666 -3.4382 20 1 4.8760 -4.4362 -3.7492 21 1 6.7540 -5.6561 -4.6788 22 1 5.4411 -6.6317 -2.8881 23 6 4.9918 -2.5162 2.3329 24 6 3.7443 -1.9335 2.3317 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.4623 -0.7387 1.9895 33 1 3.7122 -0.7079 -0.8291 34 1 5.9448 -1.7334 -0.8342 35 1 7.7540 -2.1453 3.0241 36 1 9.9729 -3.1949 3.0156 37 1 10.6393 -4.6989 1.1887 38 1 9.1053 -5.1833 -0.6435 39 1 8.7262 -4.6246 -3.3425 40 1 5.3500 -3.0247 3.2157 41 1 3.1235 -1.9863 3.2139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236485504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = 31.023642 kcal Electronic energy + Delta-G solvation = -21135.333438 eV Core-core repulsion = 18171.746345 eV Total energy + Delta-G solvation = -2963.587093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.06708 -37.57644 -36.03607 -33.65949 -32.28482 -30.27211 -29.95724 -29.30660 -27.34197 -26.64762 -25.09283 -22.62666 -21.79325 -20.90816 -20.17495 -19.40349 -17.33335 -16.90324 -15.80177 -15.52729 -14.99205 -14.55804 -14.16066 -13.73949 -13.64735 -13.19094 -13.14690 -12.81146 -12.66069 -12.49400 -12.40041 -12.11886 -11.94983 -11.59004 -11.39942 -11.17227 -11.09453 -11.03331 -10.94131 -10.56186 -10.43492 -10.15939 -9.75284 -9.33783 -9.26322 -9.17025 -8.17418 -7.51935 -7.34460 -6.80564 -6.48189 -4.29786 2.17508 2.23905 2.84408 3.06811 3.10780 3.16094 3.27559 3.70308 3.94035 4.63395 4.70527 4.79967 5.02410 5.16484 5.46669 5.57256 5.60444 5.65147 5.68852 5.76004 5.82422 5.99092 6.03265 6.18581 6.26164 6.27166 6.31186 6.42244 6.54220 6.68419 6.87261 6.97435 7.08494 7.21010 7.26882 7.38860 7.51008 7.64321 7.65804 7.87921 8.00031 8.09351 8.14439 8.18475 8.32590 8.65965 8.90835 9.00765 10.18536 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.005528 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.857716 B = 5063.484717 C = 6520.181191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 C -0.168 4.168 4 N -0.751 5.751 5 C 0.189 3.811 6 C -0.201 4.201 7 C -0.050 4.050 8 C -0.036 4.036 9 C -0.173 4.173 10 C -0.077 4.077 11 C -0.244 4.244 12 C -0.105 4.105 13 C -0.160 4.160 14 C 0.127 3.873 15 C -0.450 4.450 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.903 3.097 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.084 4.084 24 C -0.200 4.200 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.391 0.609 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.281 0.719 40 H 0.112 0.888 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 6.307 2.534 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 C -0.227 4.227 4 N -0.383 5.383 5 C 0.089 3.911 6 C -0.223 4.223 7 C -0.069 4.069 8 C -0.038 4.038 9 C -0.175 4.175 10 C -0.095 4.095 11 C -0.263 4.263 12 C -0.124 4.124 13 C -0.179 4.179 14 C 0.124 3.876 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.728 3.272 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.103 4.103 24 C -0.223 4.223 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.884 6.367 2.128 12.788 hybrid contribution -0.578 -0.348 -0.341 0.756 sum -11.462 6.019 1.787 13.069 Atomic orbital electron populations 1.22047 0.94988 1.02318 1.02271 1.20779 0.93437 0.92463 0.89436 1.22303 1.02321 0.96675 1.01419 1.44486 1.16238 1.62188 1.15359 1.17725 0.85395 0.93791 0.94184 1.20540 0.96218 1.08433 0.97074 1.21211 0.94121 0.93471 0.98104 1.18607 0.94276 0.98038 0.92832 1.18618 0.93800 1.04752 1.00296 1.20578 0.93842 0.98525 0.96570 1.20260 0.97524 1.07385 1.01155 1.20454 0.97860 0.98798 0.95258 1.21048 0.95433 1.02946 0.98487 1.17553 0.91923 0.87708 0.90367 1.19520 0.95006 1.39597 0.93809 0.89952 1.25916 0.95300 0.93368 0.99568 1.69804 1.14885 1.34823 1.22267 0.86437 0.80885 0.80728 0.79183 1.18882 1.20393 1.18835 1.20995 0.93005 0.98400 0.97897 1.20295 0.98133 1.06674 0.97163 0.92479 0.91455 0.92150 0.90435 0.92349 0.92780 0.91949 0.77517 0.87152 0.85528 0.89375 0.89654 0.89693 0.86474 0.90836 0.87001 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.38 37.16 0.35 -1.01 16 2 C 0.14 1.61 2.87 -67.93 -0.20 1.41 16 3 C -0.17 -1.77 9.43 37.15 0.35 -1.42 16 4 N -0.75 -9.67 5.23 -52.12 -0.27 -9.94 16 5 C 0.19 3.12 6.64 -83.76 -0.56 2.57 16 6 C -0.20 -3.63 8.83 -39.43 -0.35 -3.97 16 7 C -0.05 -1.06 7.98 -39.20 -0.31 -1.38 16 8 C -0.04 -0.79 4.93 -104.86 -0.52 -1.30 16 9 C -0.17 -4.22 5.52 -104.23 -0.58 -4.80 16 10 C -0.08 -1.77 9.51 -39.28 -0.37 -2.14 16 11 C -0.24 -5.57 10.03 -39.39 -0.40 -5.96 16 12 C -0.11 -2.50 9.96 -39.97 -0.40 -2.90 16 13 C -0.16 -4.15 8.62 -39.29 -0.34 -4.49 16 14 C 0.13 3.34 5.56 -106.55 -0.59 2.75 16 15 C -0.45 -11.63 7.13 -37.93 -0.27 -11.90 16 16 H 0.08 2.12 6.61 -52.48 -0.35 1.77 16 17 C 0.08 1.88 5.17 -17.32 -0.09 1.79 16 18 N -0.79 -20.12 10.95 55.55 0.61 -19.51 16 19 Si 0.90 18.68 29.59 -169.99 -5.03 13.65 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.08 -1.63 9.52 -39.20 -0.37 -2.00 16 24 C -0.20 -3.39 9.87 -39.43 -0.39 -3.78 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.08 0.96 6.45 -51.93 -0.34 0.62 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.77 7.72 -51.93 -0.40 0.37 16 32 H 0.39 4.33 8.61 -40.82 -0.35 3.98 16 33 H 0.11 1.80 6.10 -52.49 -0.32 1.48 16 34 H 0.13 2.85 7.30 -52.49 -0.38 2.47 16 35 H 0.09 1.83 8.05 -52.49 -0.42 1.40 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.08 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.12 3.12 6.21 -52.49 -0.33 2.79 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.11 2.04 8.05 -52.49 -0.42 1.62 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -27.18 336.30 -10.48 -37.66 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.82 Total: 11.63 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: -5.03 Total: -38.55 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.34 Total: -29.46 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.18 -10.48 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236485504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.680 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds