Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47483 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47151 * 174.87657 * 4 3 2 6 6 C 1.46905 * 110.99541 * 199.71090 * 5 4 3 7 7 C 1.50701 * 109.47202 * 66.05135 * 6 5 4 8 8 H 1.07997 * 119.99706 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00011 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99719 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99911 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46730 * 60.00356 * 11 9 7 13 13 H 1.48498 * 109.46887 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47386 * 300.00116 * 11 9 7 15 15 C 1.46895 * 111.00306 * 75.76072 * 5 4 3 16 16 C 1.50696 * 109.47387 * 199.76069 * 15 5 4 17 17 C 1.38260 * 119.95720 * 84.41156 * 16 15 5 18 18 C 1.38256 * 120.13209 * 180.02562 * 17 16 15 19 19 C 1.38339 * 120.02472 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.04500 * 179.97438 * 19 18 17 21 21 C 1.38904 * 119.90639 * 359.97438 * 19 18 17 22 22 O 1.35950 * 120.06177 * 179.72220 * 21 19 18 23 23 C 1.38186 * 119.95198 * 264.37063 * 16 15 5 24 24 H 1.09002 * 109.47463 * 60.00086 * 1 2 3 25 25 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46898 * 299.99990 * 1 2 3 27 27 H 1.08996 * 109.47142 * 240.00030 * 2 1 3 28 28 H 1.08996 * 109.47086 * 119.99733 * 2 1 3 29 29 H 1.09000 * 109.47042 * 59.99457 * 3 2 1 30 30 H 1.09009 * 109.47182 * 300.00062 * 3 2 1 31 31 H 1.08999 * 109.46617 * 54.87501 * 4 3 2 32 32 H 1.08999 * 109.46409 * 294.87887 * 4 3 2 33 33 H 1.09004 * 109.46736 * 186.04510 * 6 5 4 34 34 H 1.09001 * 109.47139 * 306.04228 * 6 5 4 35 35 H 0.96996 * 119.99221 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47614 * 79.75261 * 15 5 4 37 37 H 1.08999 * 109.46723 * 319.75547 * 15 5 4 38 38 H 1.08005 * 119.93426 * 359.97438 * 17 16 15 39 39 H 1.07999 * 119.98829 * 179.97438 * 18 17 16 40 40 H 0.96703 * 114.00366 * 90.00241 * 22 21 19 41 41 H 1.07998 * 120.01278 * 0.04345 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8220 -0.1243 6 6 5.4521 2.8464 -0.5915 7 6 5.5188 2.3147 -2.0000 8 1 4.6170 1.9907 -2.4981 9 6 6.7313 2.2410 -2.6524 10 7 7.8295 2.6352 -2.0455 11 14 6.8141 1.5813 -4.3980 12 1 5.9792 2.4283 -5.2873 13 1 8.2218 1.6061 -4.8703 14 1 6.3071 0.1858 -4.4245 15 6 3.9175 3.5469 1.1454 16 6 3.9569 5.0305 0.8840 17 6 2.8036 5.6971 0.5135 18 6 2.8357 7.0580 0.2723 19 6 4.0232 7.7560 0.4008 20 9 4.0551 9.0859 0.1647 21 6 5.1826 7.0877 0.7730 22 8 6.3524 7.7695 0.8948 23 6 5.1454 5.7230 1.0158 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.8514 -0.8414 32 1 3.9336 1.0101 0.9315 33 1 5.8240 3.8709 -0.5719 34 1 6.0652 2.2248 0.0610 35 1 8.6825 2.5830 -2.5044 36 1 4.7346 3.2738 1.8132 37 1 2.9665 3.2848 1.6089 38 1 1.8760 5.1534 0.4115 39 1 1.9336 7.5763 -0.0174 40 1 6.5098 8.1257 1.7799 41 1 6.0455 5.2010 1.3052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236706015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = -77.294441 kcal Electronic energy + Delta-G solvation = -22041.548341 eV Core-core repulsion = 18642.494998 eV Total energy + Delta-G solvation = -3399.053342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.66610 -39.46097 -37.48044 -36.31408 -34.30574 -32.56880 -30.98162 -29.72680 -28.59351 -26.96028 -24.62333 -23.08964 -22.64858 -21.53557 -20.75347 -19.87661 -18.05920 -17.15815 -16.60513 -16.28978 -15.66627 -15.23640 -14.82329 -14.70816 -14.46082 -14.05946 -13.90839 -13.75378 -13.41397 -13.26632 -12.73950 -12.36281 -12.14420 -11.95141 -11.72393 -11.58138 -11.44289 -11.12713 -10.92367 -10.78933 -10.73339 -10.66641 -10.40343 -10.25702 -10.03141 -9.72662 -9.19538 -8.67757 -8.41143 -8.23827 -7.29957 -6.01225 -4.02074 1.30372 1.40265 3.34214 3.38800 3.41403 3.68397 4.13630 4.44115 4.53509 4.86183 4.93667 5.13396 5.20328 5.34276 5.36176 5.38400 5.41275 5.53840 5.64554 5.76504 5.90898 5.99397 6.04298 6.06393 6.10604 6.18165 6.21592 6.27852 6.33988 6.41810 6.45824 6.70379 6.79323 6.82765 6.95477 7.29704 7.32326 7.74377 7.80318 8.09117 8.18748 8.53127 9.04636 9.61688 11.09655 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.006274 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.317915 B = 4461.455849 C = 6573.042480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.061 3.939 5 N -0.531 5.531 6 C 0.191 3.809 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.088 3.912 16 C -0.051 4.051 17 C -0.079 4.079 18 C -0.145 4.145 19 C 0.061 3.939 20 F -0.141 7.141 21 C 0.072 3.928 22 O -0.486 6.486 23 C -0.100 4.100 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.018 0.982 33 H 0.036 0.964 34 H -0.011 1.011 35 H 0.262 0.738 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.385 0.615 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 3.434 9.360 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.066 3.934 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.040 4.040 16 C -0.052 4.052 17 C -0.098 4.098 18 C -0.164 4.164 19 C 0.041 3.959 20 F -0.120 7.120 21 C 0.026 3.974 22 O -0.295 6.295 23 C -0.119 4.119 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.240 0.760 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.020 3.588 8.370 14.296 hybrid contribution 0.782 -0.295 -0.031 0.837 sum -10.237 3.293 8.339 13.608 Atomic orbital electron populations 1.21757 0.96395 1.00963 1.01545 1.21500 0.95228 0.97682 1.01852 1.21631 0.96231 0.95495 1.01759 1.22042 0.93624 0.90534 1.00524 1.62122 1.25836 1.13258 1.24303 1.19806 0.81122 0.97372 0.95132 1.21092 0.93224 1.41738 0.98582 0.91935 1.24970 0.95676 0.95716 0.98134 1.69942 0.98450 1.47694 1.37538 0.86597 0.76893 0.79374 0.84779 1.20183 1.21368 1.20298 1.21038 1.00684 0.89425 0.92819 1.19805 0.92282 0.96004 0.97091 1.20841 0.98841 0.92610 0.97469 1.20991 0.96540 0.95195 1.03634 1.18072 0.94479 0.77752 1.05568 1.91451 1.97241 1.30929 1.92345 1.18373 0.84379 0.90916 1.03698 1.84942 1.36016 1.72662 1.35881 1.21327 0.98706 0.92358 0.99534 0.92807 0.93298 0.93136 0.91904 0.92554 0.93103 0.91336 0.89408 0.96338 0.94601 0.99317 0.92883 0.94527 0.90817 0.84925 0.84792 0.76005 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.11 -1.64 5.26 -26.73 -0.14 -1.78 16 4 C 0.06 1.10 4.79 -3.83 -0.02 1.09 16 5 N -0.53 -10.77 4.34 -237.52 -1.03 -11.80 16 6 C 0.19 4.82 4.54 -4.97 -0.02 4.80 16 7 C -0.51 -14.11 8.23 -34.44 -0.28 -14.40 16 8 H 0.06 1.72 7.31 -52.49 -0.38 1.33 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 11 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.09 1.47 4.94 -4.98 -0.02 1.45 16 16 C -0.05 -0.83 5.03 -104.64 -0.53 -1.36 16 17 C -0.08 -1.15 9.72 -39.57 -0.38 -1.53 16 18 C -0.14 -2.05 10.02 -39.54 -0.40 -2.44 16 19 C 0.06 0.97 7.31 -39.30 -0.29 0.69 16 20 F -0.14 -2.26 17.11 2.25 0.04 -2.22 16 21 C 0.07 1.19 6.71 -39.18 -0.26 0.93 16 22 O -0.49 -7.56 13.37 -19.58 -0.26 -7.82 16 23 C -0.10 -1.71 8.34 -39.44 -0.33 -2.04 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.67 6.89 -51.93 -0.36 0.31 16 30 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.09 1.81 6.58 -51.93 -0.34 1.47 16 32 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 33 H 0.04 0.98 6.33 -51.93 -0.33 0.65 16 34 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.04 0.62 7.90 -51.93 -0.41 0.21 16 37 H 0.07 1.04 6.54 -51.93 -0.34 0.70 16 38 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.38 3.73 9.06 45.56 0.41 4.14 16 41 H 0.14 2.39 7.99 -52.49 -0.42 1.97 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -31.52 343.18 -8.45 -39.97 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.52 Total: 1.92 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.56 Total: -16.02 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.30 Total: -37.80 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.26 Total: -7.82 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.52 -8.45 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236706015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.321 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds