Wall clock time and date at job start Tue Mar 31 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47483 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47151 * 174.87657 * 4 3 2 6 6 C 1.46905 * 110.99541 * 199.71090 * 5 4 3 7 7 C 1.50701 * 109.47202 * 66.05135 * 6 5 4 8 8 H 1.07997 * 119.99706 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00011 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99719 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99911 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46730 * 60.00356 * 11 9 7 13 13 H 1.48498 * 109.46887 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47386 * 300.00116 * 11 9 7 15 15 C 1.46895 * 111.00306 * 75.76072 * 5 4 3 16 16 C 1.50696 * 109.47387 * 199.76069 * 15 5 4 17 17 C 1.38260 * 119.95720 * 84.41156 * 16 15 5 18 18 C 1.38256 * 120.13209 * 180.02562 * 17 16 15 19 19 C 1.38339 * 120.02472 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.04500 * 179.97438 * 19 18 17 21 21 C 1.38904 * 119.90639 * 359.97438 * 19 18 17 22 22 O 1.35950 * 120.06177 * 179.72220 * 21 19 18 23 23 C 1.38186 * 119.95198 * 264.37063 * 16 15 5 24 24 H 1.09002 * 109.47463 * 60.00086 * 1 2 3 25 25 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46898 * 299.99990 * 1 2 3 27 27 H 1.08996 * 109.47142 * 240.00030 * 2 1 3 28 28 H 1.08996 * 109.47086 * 119.99733 * 2 1 3 29 29 H 1.09000 * 109.47042 * 59.99457 * 3 2 1 30 30 H 1.09009 * 109.47182 * 300.00062 * 3 2 1 31 31 H 1.08999 * 109.46617 * 54.87501 * 4 3 2 32 32 H 1.08999 * 109.46409 * 294.87887 * 4 3 2 33 33 H 1.09004 * 109.46736 * 186.04510 * 6 5 4 34 34 H 1.09001 * 109.47139 * 306.04228 * 6 5 4 35 35 H 0.96996 * 119.99221 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47614 * 79.75261 * 15 5 4 37 37 H 1.08999 * 109.46723 * 319.75547 * 15 5 4 38 38 H 1.08005 * 119.93426 * 359.97438 * 17 16 15 39 39 H 1.07999 * 119.98829 * 179.97438 * 18 17 16 40 40 H 0.96703 * 114.00366 * 90.00241 * 22 21 19 41 41 H 1.07998 * 120.01278 * 0.04345 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8220 -0.1243 6 6 5.4521 2.8464 -0.5915 7 6 5.5188 2.3147 -2.0000 8 1 4.6170 1.9907 -2.4981 9 6 6.7313 2.2410 -2.6524 10 7 7.8295 2.6352 -2.0455 11 14 6.8141 1.5813 -4.3980 12 1 5.9792 2.4283 -5.2873 13 1 8.2218 1.6061 -4.8703 14 1 6.3071 0.1858 -4.4245 15 6 3.9175 3.5469 1.1454 16 6 3.9569 5.0305 0.8840 17 6 2.8036 5.6971 0.5135 18 6 2.8357 7.0580 0.2723 19 6 4.0232 7.7560 0.4008 20 9 4.0551 9.0859 0.1647 21 6 5.1826 7.0877 0.7730 22 8 6.3524 7.7695 0.8948 23 6 5.1454 5.7230 1.0158 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.8514 -0.8414 32 1 3.9336 1.0101 0.9315 33 1 5.8240 3.8709 -0.5719 34 1 6.0652 2.2248 0.0610 35 1 8.6825 2.5830 -2.5044 36 1 4.7346 3.2738 1.8132 37 1 2.9665 3.2848 1.6089 38 1 1.8760 5.1534 0.4115 39 1 1.9336 7.5763 -0.0174 40 1 6.5098 8.1257 1.7799 41 1 6.0455 5.2010 1.3052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236706015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:00 Heat of formation + Delta-G solvation = -97.610548 kcal Electronic energy + Delta-G solvation = -22042.429313 eV Core-core repulsion = 18642.494998 eV Total energy + Delta-G solvation = -3399.934315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.90186 -40.71598 -38.90541 -37.59041 -35.57446 -34.56631 -32.27810 -30.99215 -30.07822 -28.57657 -26.14022 -24.61212 -23.93658 -22.88646 -21.94358 -21.35605 -19.31633 -18.56296 -18.35976 -17.69085 -16.98447 -16.67045 -16.40259 -16.12219 -15.82796 -15.46136 -15.31733 -14.99074 -14.65813 -14.48431 -14.25108 -13.74137 -13.63640 -13.27474 -13.17251 -12.99270 -12.79370 -12.65371 -12.60956 -12.35399 -12.05634 -12.00811 -11.78687 -11.65029 -11.41418 -11.25149 -11.14042 -10.59171 -9.89089 -9.48983 -8.98281 -8.19257 -6.27865 0.07247 0.19419 1.38797 1.42048 1.49429 2.38541 2.47647 2.97513 3.13865 3.31179 3.45108 3.77565 3.86485 4.12590 4.17228 4.26948 4.31953 4.40353 4.47296 4.57510 4.65874 4.84210 4.89317 4.89372 4.99018 5.05694 5.06912 5.09224 5.18942 5.21061 5.25682 5.33088 5.41926 5.54022 5.58556 5.61208 5.67741 5.81235 6.09453 6.39329 6.66058 6.70855 6.88831 7.41073 8.91401 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.006274 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.317915 B = 4461.455849 C = 6573.042480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.100 4.100 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.208 3.792 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.090 3.910 16 C -0.064 4.064 17 C -0.074 4.074 18 C -0.132 4.132 19 C 0.048 3.952 20 F -0.143 7.143 21 C 0.063 3.937 22 O -0.504 6.504 23 C -0.121 4.121 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.011 0.989 34 H -0.043 1.043 35 H 0.262 0.738 36 H 0.028 0.972 37 H 0.109 0.891 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.408 0.592 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 3.286 9.157 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.138 4.138 4 C -0.067 4.067 5 N -0.258 5.258 6 C 0.082 3.918 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.190 1.190 15 C -0.037 4.037 16 C -0.065 4.065 17 C -0.093 4.093 18 C -0.151 4.151 19 C 0.029 3.971 20 F -0.122 7.122 21 C 0.017 3.983 22 O -0.316 6.316 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.029 0.971 34 H -0.025 1.025 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.127 0.873 38 H 0.179 0.821 39 H 0.185 0.815 40 H 0.266 0.734 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.784 3.441 8.195 16.401 hybrid contribution 1.647 -0.214 0.110 1.665 sum -12.136 3.227 8.305 15.056 Atomic orbital electron populations 1.21715 0.94435 1.01955 1.02102 1.21485 0.96872 0.96142 1.01644 1.21523 0.92819 0.97109 1.02351 1.22077 0.96372 0.88914 0.99326 1.62053 1.22191 1.14830 1.26707 1.19392 0.83717 0.94819 0.93892 1.21447 0.93267 1.41369 0.99712 0.91947 1.25867 0.95332 0.96006 1.02457 1.70082 0.98989 1.49048 1.39335 0.85544 0.76983 0.79242 0.79543 1.19597 1.21059 1.18953 1.21126 1.02136 0.89392 0.91065 1.19892 0.92855 0.95799 0.97907 1.21133 0.99026 0.92880 0.96222 1.21348 0.96932 0.95040 1.01763 1.18261 0.94942 0.77843 1.06096 1.91443 1.97280 1.31029 1.92420 1.18481 0.84974 0.90879 1.03930 1.84863 1.36020 1.72700 1.38056 1.21294 0.98685 0.92887 1.01139 0.92869 0.92174 0.91945 0.93108 0.91923 0.90899 0.92169 0.92542 0.95945 0.97136 1.02549 0.92903 0.95391 0.87276 0.82052 0.81471 0.73361 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.82 5.93 30.59 0.18 -2.64 16 3 C -0.10 -2.68 5.26 30.60 0.16 -2.51 16 4 C 0.06 2.19 4.79 86.31 0.41 2.60 16 5 N -0.53 -21.71 4.34 -905.39 -3.93 -25.64 16 6 C 0.21 10.96 4.54 85.56 0.39 11.35 16 7 C -0.52 -29.56 8.23 25.60 0.21 -29.35 16 8 H 0.06 3.47 7.31 -2.91 -0.02 3.45 16 9 C 0.00 0.07 5.46 84.65 0.46 0.54 16 10 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 11 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.09 2.95 4.94 85.56 0.42 3.37 16 16 C -0.06 -2.05 5.03 -19.87 -0.10 -2.15 16 17 C -0.07 -1.96 9.72 22.28 0.22 -1.75 16 18 C -0.13 -3.38 10.02 22.30 0.22 -3.16 16 19 C 0.05 1.49 7.31 22.45 0.16 1.65 16 20 F -0.14 -4.41 17.11 44.97 0.77 -3.64 16 21 C 0.06 2.10 6.71 22.53 0.15 2.26 16 22 O -0.50 -16.01 13.37 -92.99 -1.24 -17.26 16 23 C -0.12 -4.25 8.34 22.36 0.19 -4.07 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.64 6.89 -2.39 -0.02 1.62 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.06 2.37 6.58 -2.39 -0.02 2.36 16 32 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 33 H 0.01 0.61 6.33 -2.38 -0.02 0.59 16 34 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.03 0.96 7.90 -2.39 -0.02 0.94 16 37 H 0.11 2.76 6.54 -2.39 -0.02 2.75 16 38 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.41 8.05 9.06 -74.06 -0.67 7.37 16 41 H 0.12 4.49 7.99 -2.91 -0.02 4.47 16 Total: -1.00 -69.62 343.18 2.05 -67.57 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.35 Total: 14.65 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 3.80 Total: -25.76 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -3.65 Total: -82.74 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.24 Total: -17.26 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.62 2.05 -67.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236706015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.040 kcal (2) G-P(sol) polarization free energy of solvation -69.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds