Wall clock time and date at job start Tue Mar 31 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47142 * 2 1 4 4 C 1.53002 * 109.47142 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47424 * 181.08744 * 4 3 2 6 6 C 1.46897 * 110.99997 * 299.45326 * 5 4 3 7 7 C 1.50698 * 109.47225 * 294.04527 * 6 5 4 8 8 H 1.08003 * 119.99985 * 355.08033 * 7 6 5 9 9 C 1.37878 * 120.00302 * 175.08573 * 7 6 5 10 10 N 1.31512 * 119.99600 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99830 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47366 * 59.99932 * 11 9 7 13 13 H 1.48501 * 109.46767 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47129 * 299.99261 * 11 9 7 15 15 C 1.46900 * 110.99701 * 63.40322 * 5 4 3 16 16 C 1.50705 * 109.47393 * 66.04620 * 15 5 4 17 17 C 1.38172 * 119.95600 * 89.99902 * 16 15 5 18 18 C 1.38732 * 119.98943 * 180.02562 * 17 16 15 19 19 O 1.35905 * 120.04060 * 179.97438 * 18 17 16 20 20 C 1.38704 * 119.91781 * 0.02562 * 18 17 16 21 21 C 1.38347 * 119.91953 * 0.02562 * 20 18 17 22 22 F 1.35100 * 119.99474 * 179.97438 * 21 20 18 23 23 C 1.38201 * 119.95782 * 269.73159 * 16 15 5 24 24 H 1.08996 * 109.46814 * 59.99854 * 1 2 3 25 25 H 1.08997 * 109.46861 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46749 * 299.99710 * 1 2 3 27 27 H 1.09002 * 109.46749 * 240.00290 * 2 1 3 28 28 H 1.08997 * 109.47394 * 120.00636 * 2 1 3 29 29 H 1.09002 * 109.47062 * 60.00482 * 3 2 1 30 30 H 1.08996 * 109.47385 * 299.99796 * 3 2 1 31 31 H 1.09005 * 109.46859 * 61.09325 * 4 3 2 32 32 H 1.08994 * 109.47289 * 301.09500 * 4 3 2 33 33 H 1.08998 * 109.47451 * 54.04829 * 6 5 4 34 34 H 1.09002 * 109.46966 * 174.04575 * 6 5 4 35 35 H 0.97001 * 119.99317 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47456 * 306.05012 * 15 5 4 37 37 H 1.08998 * 109.47174 * 186.05015 * 15 5 4 38 38 H 1.07999 * 120.00573 * 359.97438 * 17 16 15 39 39 H 0.96705 * 113.99529 * 89.99828 * 19 18 17 40 40 H 1.07998 * 120.03955 * 179.97438 * 20 18 17 41 41 H 1.07998 * 119.96037 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8272 0.0256 6 6 3.5990 3.5710 -1.1543 7 6 4.2299 2.9890 -2.3930 8 1 4.9658 2.2032 -2.3059 9 6 3.8679 3.4597 -3.6373 10 7 2.9716 4.4162 -3.7433 11 14 4.6495 2.7377 -5.1726 12 1 4.3568 1.2833 -5.2400 13 1 4.0934 3.4102 -6.3742 14 1 6.1191 2.9452 -5.1243 15 6 3.6569 3.5045 1.2653 16 6 4.3473 2.8577 2.4385 17 6 5.5790 3.3236 2.8568 18 6 6.2154 2.7283 3.9363 19 8 7.4272 3.1854 4.3483 20 6 5.6139 1.6655 4.5939 21 6 4.3810 1.2013 4.1714 22 9 3.7940 0.1659 4.8105 23 6 3.7450 1.8031 3.0979 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9458 -0.9006 32 1 3.9337 0.9116 0.8791 33 1 2.5142 3.4967 -1.2299 34 1 3.8857 4.6183 -1.0583 35 1 2.7166 4.7470 -4.6187 36 1 2.5770 3.4233 1.3894 37 1 3.9384 4.5562 1.2127 38 1 6.0467 4.1504 2.3429 39 1 7.3780 3.8838 5.0153 40 1 6.1077 1.2004 5.4342 41 1 2.7801 1.4437 2.7722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237278764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:52 Heat of formation + Delta-G solvation = -93.179096 kcal Electronic energy + Delta-G solvation = -22267.162222 eV Core-core repulsion = 18867.420069 eV Total energy + Delta-G solvation = -3399.742153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93493 -40.89964 -39.25484 -37.38171 -35.36637 -34.57755 -32.39049 -30.78125 -29.80302 -28.88095 -26.35133 -25.06177 -23.66420 -22.99124 -22.40032 -20.96311 -19.15660 -18.32589 -17.79669 -17.58020 -17.19381 -16.95757 -16.59735 -16.39964 -16.02414 -15.59344 -15.51379 -15.13913 -14.69053 -14.24213 -14.06121 -13.90676 -13.60575 -13.29281 -13.10832 -12.92040 -12.70663 -12.60207 -12.46560 -12.31171 -12.26608 -12.03849 -11.91707 -11.81097 -11.53470 -11.27234 -11.23618 -10.56983 -9.84161 -9.62156 -8.87915 -8.17216 -6.25588 0.08881 0.11676 1.41304 1.43193 1.50989 2.37893 2.45523 2.91766 3.15772 3.40141 3.51307 3.70139 3.94364 4.02951 4.05525 4.10846 4.28626 4.32666 4.36233 4.48434 4.59228 4.73969 4.82302 4.85901 4.90745 4.95338 5.00310 5.04284 5.13409 5.23251 5.24625 5.27290 5.39501 5.47557 5.49455 5.55659 5.69694 5.77958 6.09699 6.35635 6.65375 6.82906 6.90076 7.43295 8.92749 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.005063 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.192877 B = 5529.342527 C = 6801.535231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.068 3.932 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.086 3.914 16 C -0.024 4.024 17 C -0.143 4.143 18 C 0.141 3.859 19 O -0.501 6.501 20 C -0.185 4.185 21 C 0.108 3.892 22 F -0.141 7.141 23 C -0.160 4.160 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.074 0.926 33 H -0.015 1.015 34 H 0.001 0.999 35 H 0.263 0.737 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.416 0.584 40 H 0.157 0.843 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 -5.053 17.189 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.186 4.186 4 C -0.060 4.060 5 N -0.260 5.260 6 C 0.080 3.920 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.785 3.215 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.196 1.196 15 C -0.042 4.042 16 C -0.025 4.025 17 C -0.162 4.162 18 C 0.096 3.904 19 O -0.315 6.315 20 C -0.204 4.204 21 C 0.088 3.912 22 F -0.120 7.120 23 C -0.179 4.179 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.002 0.998 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.276 0.724 40 H 0.175 0.825 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.528 -5.375 16.674 17.586 hybrid contribution -0.907 0.254 -0.768 1.216 sum 0.621 -5.120 15.906 16.721 Atomic orbital electron populations 1.21741 0.95177 1.02092 1.01451 1.21410 0.96460 0.95489 1.01971 1.22114 0.97565 0.98027 1.00872 1.22038 0.92675 0.90116 1.01209 1.62265 1.59648 1.02779 1.01311 1.19425 0.93074 0.92265 0.87241 1.21372 1.22913 1.20086 0.91237 0.92544 1.25762 0.95666 0.95505 1.02159 1.70059 1.33184 1.29056 1.24919 0.85586 0.78853 0.78660 0.78437 1.19527 1.20876 1.19595 1.21088 0.97226 0.98037 0.87831 1.19418 0.94232 0.94451 0.94396 1.21482 0.94508 1.02217 0.97999 1.18012 0.85062 0.93707 0.93650 1.84791 1.24059 1.59431 1.63212 1.21447 0.94786 1.00417 1.03749 1.17407 0.92780 0.87416 0.93573 1.91492 1.83860 1.55861 1.80740 1.21128 1.02327 0.98009 0.96420 0.94090 0.91359 0.92259 0.92871 0.90878 0.91830 0.94190 0.92671 0.90741 0.99762 0.98139 0.92826 0.93473 0.90348 0.84675 0.72428 0.82503 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.27 5.93 30.59 0.18 -3.09 16 3 C -0.15 -5.08 4.47 30.59 0.14 -4.95 16 4 C 0.07 2.56 4.80 86.30 0.41 2.98 16 5 N -0.54 -22.43 4.69 -905.36 -4.25 -26.68 16 6 C 0.21 10.59 4.48 85.56 0.38 10.98 16 7 C -0.52 -28.99 8.40 25.60 0.22 -28.78 16 8 H 0.06 3.16 7.29 -2.91 -0.02 3.14 16 9 C 0.01 0.41 5.46 84.66 0.46 0.87 16 10 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 11 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 C 0.09 2.90 4.93 85.56 0.42 3.32 16 16 C -0.02 -0.69 4.88 -19.89 -0.10 -0.79 16 17 C -0.14 -3.79 9.64 22.37 0.22 -3.58 16 18 C 0.14 3.22 6.70 22.50 0.15 3.37 16 19 O -0.50 -9.54 13.50 -92.48 -1.25 -10.79 16 20 C -0.18 -4.04 9.97 22.41 0.22 -3.82 16 21 C 0.11 2.63 7.30 22.36 0.16 2.79 16 22 F -0.14 -3.47 17.27 44.97 0.78 -2.69 16 23 C -0.16 -4.18 7.90 22.33 0.18 -4.00 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 2.01 5.72 -2.39 -0.01 2.00 16 30 H 0.04 1.70 6.35 -2.39 -0.02 1.68 16 31 H 0.05 2.36 6.94 -2.38 -0.02 2.35 16 32 H 0.07 2.52 5.94 -2.39 -0.01 2.50 16 33 H -0.02 -0.84 6.04 -2.39 -0.01 -0.85 16 34 H 0.00 0.03 7.93 -2.39 -0.02 0.01 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.05 1.54 6.03 -2.38 -0.01 1.53 16 37 H 0.08 2.65 7.87 -2.39 -0.02 2.63 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.42 3.30 9.06 -74.05 -0.67 2.63 16 40 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.14 3.47 7.34 -2.91 -0.02 3.45 16 Total: -1.00 -64.57 336.05 1.72 -62.85 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.37 Total: 13.58 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 3.76 Total: -27.65 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.97 Total: -81.70 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.25 Total: -10.79 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.57 1.72 -62.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237278764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.326 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds