Wall clock time and date at job start Tue Mar 31 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47078 * 2 1 4 4 C 1.35902 * 116.99606 * 180.02562 * 3 2 1 5 5 C 1.38766 * 120.03741 * 179.97438 * 4 3 2 6 6 C 1.38135 * 119.99319 * 179.97438 * 5 4 3 7 7 C 1.38253 * 120.07866 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.95739 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47087 * 104.99973 * 8 7 6 10 10 C 1.46897 * 111.00234 * 293.95346 * 9 8 7 11 11 C 1.52998 * 109.47302 * 163.99750 * 10 9 8 12 12 C 1.46902 * 110.99746 * 169.99779 * 9 8 7 13 13 C 1.50697 * 109.47291 * 284.31810 * 12 9 8 14 14 H 1.08001 * 120.00024 * 4.66650 * 13 12 9 15 15 C 1.37878 * 120.00001 * 184.67557 * 13 12 9 16 16 N 1.31516 * 119.99855 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00338 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46952 * 89.99437 * 17 15 13 19 19 H 1.48496 * 109.47653 * 209.99806 * 17 15 13 20 20 H 1.48499 * 109.46765 * 330.00084 * 17 15 13 21 21 C 1.38474 * 120.08713 * 359.97438 * 7 6 5 22 22 F 1.35092 * 120.00044 * 180.02562 * 21 7 6 23 23 C 1.38390 * 120.00340 * 359.78765 * 21 7 6 24 24 H 1.09008 * 109.46960 * 59.99695 * 1 2 3 25 25 H 1.09000 * 109.47510 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46949 * 299.99928 * 1 2 3 27 27 H 1.09008 * 109.47036 * 240.00063 * 2 1 3 28 28 H 1.08996 * 109.47299 * 120.00548 * 2 1 3 29 29 H 1.07993 * 120.00760 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.95942 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46904 * 225.00540 * 8 7 6 32 32 H 1.08997 * 109.46991 * 344.99758 * 8 7 6 33 33 H 1.08999 * 109.46921 * 284.00051 * 10 9 8 34 34 H 1.08997 * 109.46820 * 43.99866 * 10 9 8 35 35 H 1.08995 * 109.47395 * 179.29767 * 11 10 9 36 36 H 1.09003 * 109.47225 * 299.29876 * 11 10 9 37 37 H 1.09001 * 109.46719 * 59.29297 * 11 10 9 38 38 H 1.09006 * 109.46910 * 44.31856 * 12 9 8 39 39 H 1.09001 * 109.46914 * 164.31466 * 12 9 8 40 40 H 0.96998 * 120.00011 * 179.97438 * 16 15 13 41 41 H 1.08001 * 120.04067 * 180.25341 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 3.8850 2.8072 -0.0011 6 6 5.2546 2.9870 -0.0011 7 6 6.0973 1.8911 0.0000 8 6 7.5911 2.0905 0.0005 9 7 8.1233 1.8008 1.3387 10 6 7.6397 2.7802 2.3210 11 6 7.8702 2.2415 3.7343 12 6 9.5914 1.7526 1.3223 13 6 10.0446 0.4574 0.6993 14 1 9.3182 -0.2244 0.2823 15 6 11.3865 0.1428 0.6618 16 7 12.2710 0.9733 1.1693 17 14 11.9482 -1.4629 -0.1099 18 1 12.2115 -1.2516 -1.5561 19 1 13.1919 -1.9245 0.5575 20 1 10.8876 -2.4891 0.0554 21 6 5.5707 0.6104 0.0016 22 9 6.3958 -0.4593 0.0032 23 6 4.1991 0.4262 0.0066 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.2278 3.6642 -0.0007 30 1 5.6675 3.9850 -0.0012 31 1 8.0477 1.4178 -0.7256 32 1 7.8200 3.1223 -0.2660 33 1 8.1817 3.7176 2.1965 34 1 6.5745 2.9532 2.1673 35 1 7.5227 2.9735 4.4633 36 1 7.3181 1.3105 3.8629 37 1 8.9340 2.0566 3.8836 38 1 9.9759 2.5900 0.7400 39 1 9.9684 1.8163 2.3431 40 1 13.2150 0.7519 1.1432 41 1 3.7878 -0.5724 0.0120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237635558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:15 Heat of formation + Delta-G solvation = -62.168810 kcal Electronic energy + Delta-G solvation = -22195.945276 eV Core-core repulsion = 18797.547831 eV Total energy + Delta-G solvation = -3398.397446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.40171 -40.11345 -38.01691 -36.31474 -32.63660 -32.19761 -31.00457 -30.48040 -29.33473 -26.70335 -24.69358 -23.95749 -22.55704 -22.03749 -21.27406 -19.64739 -18.48720 -16.71159 -16.37570 -16.29570 -15.79833 -15.48485 -15.21163 -14.65789 -14.23031 -14.14119 -13.90489 -13.64388 -13.47964 -13.36841 -12.94636 -12.76084 -12.35424 -12.03175 -11.80930 -11.57574 -11.53221 -11.24195 -11.17774 -10.89394 -10.85907 -10.71175 -10.65939 -10.45224 -10.21290 -9.62222 -9.17959 -8.77218 -8.37011 -7.98569 -7.20659 -5.96582 -3.96686 1.29090 1.41094 3.02757 3.36115 3.42081 3.48240 3.69099 4.48737 4.49504 4.66719 4.68077 4.85531 4.96730 5.01497 5.07249 5.16126 5.22562 5.39562 5.41797 5.50544 5.64196 5.73458 5.74512 5.85314 6.01908 6.12411 6.14530 6.26630 6.30330 6.38599 6.47388 6.59650 6.65208 6.84446 6.87217 7.27972 7.33200 7.37516 7.90029 8.17083 8.24617 8.60571 9.12125 9.67179 11.14122 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.004286 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.968321 B = 6530.660722 C = 7253.010001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.315 6.315 4 C 0.148 3.852 5 C -0.168 4.168 6 C -0.052 4.052 7 C -0.137 4.137 8 C 0.104 3.896 9 N -0.529 5.529 10 C 0.049 3.951 11 C -0.142 4.142 12 C 0.191 3.809 13 C -0.501 4.501 14 H 0.065 0.935 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.895 3.105 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.168 3.832 22 F -0.119 7.119 23 C -0.253 4.253 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.061 0.939 38 H -0.012 1.012 39 H 0.038 0.962 40 H 0.260 0.740 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.433 1.994 -1.831 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.229 6.229 4 C 0.102 3.898 5 C -0.187 4.187 6 C -0.071 4.071 7 C -0.138 4.138 8 C -0.024 4.024 9 N -0.254 5.254 10 C -0.079 4.079 11 C -0.200 4.200 12 C 0.067 3.933 13 C -0.539 4.539 14 H 0.083 0.917 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.723 3.277 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.197 1.197 21 C 0.148 3.852 22 F -0.097 7.097 23 C -0.273 4.273 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.006 0.994 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.516 1.636 -1.648 20.647 hybrid contribution 0.971 -0.534 -0.590 1.255 sum -19.545 1.102 -2.238 19.703 Atomic orbital electron populations 1.21770 0.92763 1.02825 1.03446 1.22802 0.95780 0.82065 1.01700 1.86060 1.18841 1.29249 1.88717 1.18584 0.81896 0.93425 0.95859 1.20344 0.95045 0.94634 1.08652 1.20769 0.91684 0.98440 0.96220 1.20110 0.97779 0.91390 1.04551 1.20834 0.88081 0.99636 0.93874 1.62185 1.13180 1.46638 1.03397 1.22016 0.98899 0.93468 0.93545 1.21727 1.02641 1.00405 0.95205 1.19799 0.79567 0.96332 0.97636 1.21212 0.91653 1.04060 1.37019 0.91712 1.24973 0.96742 0.97069 0.95872 1.69958 1.01562 1.36396 1.46267 0.86537 0.78062 0.83951 0.79141 1.20812 1.21361 1.19738 1.17197 0.86614 0.83720 0.97718 1.91579 1.71615 1.53661 1.92851 1.21117 0.92682 0.99463 1.14018 0.91565 0.90403 0.91522 0.91925 0.91853 0.85045 0.84773 0.88995 0.94895 0.96075 0.92310 0.93730 0.92586 0.92011 0.99376 0.94378 0.93052 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.76 10.14 -19.43 -0.20 -3.96 16 4 C 0.15 1.97 6.69 -39.23 -0.26 1.70 16 5 C -0.17 -2.13 9.99 -39.42 -0.39 -2.52 16 6 C -0.05 -0.71 8.66 -39.61 -0.34 -1.06 16 7 C -0.14 -2.28 4.49 -104.53 -0.47 -2.75 16 8 C 0.10 2.02 4.60 -4.97 -0.02 2.00 16 9 N -0.53 -11.57 4.37 -237.52 -1.04 -12.61 16 10 C 0.05 0.92 5.55 -3.83 -0.02 0.89 16 11 C -0.14 -2.53 9.99 37.16 0.37 -2.16 16 12 C 0.19 5.01 4.59 -4.98 -0.02 4.98 16 13 C -0.50 -14.28 8.61 -34.44 -0.30 -14.58 16 14 H 0.06 1.87 7.66 -52.49 -0.40 1.46 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.17 2.87 7.24 -39.44 -0.29 2.58 16 22 F -0.12 -2.36 16.75 2.25 0.04 -2.32 16 23 C -0.25 -3.61 9.02 -39.37 -0.35 -3.97 16 24 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.52 7.68 -51.92 -0.40 0.12 16 28 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.13 1.56 8.00 -52.49 -0.42 1.14 16 31 H 0.09 1.99 7.26 -51.93 -0.38 1.61 16 32 H 0.03 0.60 7.93 -51.93 -0.41 0.19 16 33 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.06 0.99 6.13 -51.93 -0.32 0.67 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 38 H -0.01 -0.32 8.00 -51.93 -0.42 -0.73 16 39 H 0.04 1.06 6.24 -51.93 -0.32 0.74 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.14 1.66 6.30 -52.49 -0.33 1.33 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -31.18 340.49 -8.19 -39.36 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.22 Total: -3.05 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.61 Total: -13.36 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.30 Total: -38.92 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.20 Total: -3.96 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.18 -8.19 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237635558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.805 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds