Wall clock time and date at job start Tue Mar 31 2020 05:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38712 * 120.04375 * 0.02562 * 5 4 3 7 7 C 1.38345 * 119.91942 * 179.97438 * 6 5 4 8 8 F 1.35096 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38518 * 120.00492 * 0.02587 * 7 6 5 10 10 C 1.38213 * 120.08618 * 359.94954 * 9 7 6 11 11 C 1.38180 * 120.07860 * 359.79475 * 10 9 7 12 12 C 1.50700 * 120.00135 * 180.23286 * 11 10 9 13 13 N 1.46897 * 109.46975 * 260.24684 * 12 11 10 14 14 C 1.46897 * 111.00793 * 293.95828 * 13 12 11 15 15 C 1.46900 * 111.00095 * 169.99684 * 13 12 11 16 16 C 1.50702 * 109.47550 * 190.00181 * 15 13 12 17 17 H 1.07998 * 119.99783 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99853 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99535 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00271 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47235 * 89.99381 * 20 18 16 22 22 H 1.48495 * 109.47016 * 209.99733 * 20 18 16 23 23 H 1.48503 * 109.46906 * 329.99732 * 20 18 16 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.08003 * 120.03847 * 359.94963 * 6 5 4 32 32 H 1.07997 * 119.95504 * 179.97438 * 9 7 6 33 33 H 1.07992 * 119.95885 * 180.02562 * 10 9 7 34 34 H 1.08990 * 109.47178 * 20.25058 * 12 11 10 35 35 H 1.09007 * 109.47137 * 140.25440 * 12 11 10 36 36 H 1.09004 * 109.46747 * 59.99633 * 14 13 12 37 37 H 1.08994 * 109.47686 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46854 * 300.00013 * 14 13 12 39 39 H 1.08995 * 109.47192 * 310.00975 * 15 13 12 40 40 H 1.09008 * 109.46735 * 70.00633 * 15 13 12 41 41 H 0.96997 * 119.99838 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3313 3.8173 0.0014 7 6 3.9620 5.0486 0.0024 8 9 3.2285 6.1831 0.0034 9 6 5.3454 5.1183 0.0013 10 6 6.0975 3.9587 0.0003 11 6 5.4713 2.7270 0.0046 12 6 6.2931 1.4638 0.0088 13 7 6.3631 0.9208 -1.3543 14 6 5.0403 0.4757 -1.8125 15 6 7.3434 -0.1702 -1.4367 16 6 7.5685 -0.5355 -2.8813 17 1 7.0368 -0.0095 -3.6604 18 6 8.4531 -1.5412 -3.2083 19 7 8.6499 -1.8596 -4.4691 20 14 9.3722 -2.4514 -1.8607 21 1 8.5781 -3.6296 -1.4287 22 1 10.6884 -2.9043 -2.3781 23 1 9.5807 -1.5439 -0.7039 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.2527 3.7623 0.0014 32 1 5.8369 6.0799 0.0017 33 1 7.1760 4.0154 -0.0001 34 1 7.2993 1.6862 0.3635 35 1 5.8289 0.7306 0.6685 36 1 4.3511 1.3201 -1.8077 37 1 5.1209 0.0786 -2.8244 38 1 4.6674 -0.3016 -1.1455 39 1 8.2849 0.1531 -0.9927 40 1 6.9664 -1.0389 -0.8967 41 1 9.2719 -2.5674 -4.6991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237903521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:54 Heat of formation + Delta-G solvation = -56.725769 kcal Electronic energy + Delta-G solvation = -22292.374334 eV Core-core repulsion = 18894.212917 eV Total energy + Delta-G solvation = -3398.161418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.93060 -40.41660 -37.62820 -36.33950 -34.05078 -32.59063 -31.13656 -30.12969 -27.72240 -27.01652 -26.15835 -23.81779 -22.75681 -21.83465 -21.00709 -20.01646 -18.46822 -17.02727 -16.82556 -16.52574 -15.89156 -15.57722 -15.47520 -14.78642 -14.65252 -14.34939 -14.19856 -13.84007 -13.75384 -13.32387 -12.83585 -12.51250 -12.35291 -12.22884 -12.12537 -11.75663 -11.54467 -11.35615 -11.34003 -11.12518 -11.02210 -10.84248 -10.65281 -10.52655 -10.04079 -9.80948 -9.24766 -8.84245 -8.54909 -8.14923 -7.27986 -6.02082 -3.98843 1.15982 1.31697 3.08017 3.30079 3.37621 3.39701 3.59065 4.21042 4.44586 4.62047 4.69167 4.76203 4.88066 4.96945 5.00600 5.05975 5.18378 5.19937 5.28318 5.32460 5.43285 5.59212 5.75647 5.78131 5.87842 5.94507 6.00077 6.03948 6.16898 6.22395 6.31909 6.42838 6.56611 6.75482 6.84021 6.93503 7.05426 7.34184 7.63790 7.96472 8.11164 8.70366 9.07307 9.59848 11.11207 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.004915 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.808340 B = 5695.766768 C = 7012.123649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.054 3.946 4 O -0.296 6.296 5 C 0.166 3.834 6 C -0.249 4.249 7 C 0.126 3.874 8 F -0.143 7.143 9 C -0.191 4.191 10 C -0.038 4.038 11 C -0.103 4.103 12 C 0.097 3.903 13 N -0.525 5.525 14 C 0.042 3.958 15 C 0.162 3.838 16 C -0.506 4.506 17 H 0.080 0.920 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.267 1.267 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.016 0.984 39 H 0.027 0.973 40 H -0.016 1.016 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 9.569 12.277 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.021 4.021 4 O -0.209 6.209 5 C 0.119 3.881 6 C -0.268 4.268 7 C 0.107 3.893 8 F -0.121 7.121 9 C -0.210 4.210 10 C -0.057 4.057 11 C -0.104 4.104 12 C -0.031 4.031 13 N -0.249 5.249 14 C -0.106 4.106 15 C 0.035 3.965 16 C -0.544 4.544 17 H 0.098 0.902 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.192 1.192 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.001 0.999 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.188 9.640 11.843 20.177 hybrid contribution -0.103 -0.801 1.088 1.355 sum -13.291 8.839 12.930 20.542 Atomic orbital electron populations 1.21683 0.94410 1.02490 1.01985 1.21490 0.95818 0.94748 1.04167 1.22903 0.78921 0.99027 1.01255 1.86360 1.20901 1.25942 1.87713 1.18467 0.91561 0.83713 0.94348 1.21039 1.00734 0.91250 1.13803 1.17333 0.89244 0.81276 1.01463 1.91474 1.77501 1.49253 1.93896 1.21001 0.91647 1.00123 1.08214 1.20767 1.00352 0.89862 0.94703 1.19426 0.90294 0.96545 1.04136 1.20902 0.98003 0.92069 0.92167 1.62044 1.08213 1.35793 1.18847 1.22361 0.89490 0.98030 1.00732 1.20203 0.90659 0.87265 0.98333 1.21040 1.24691 1.17830 0.90869 0.90159 1.24894 0.96523 0.96744 0.95201 1.69895 1.36684 1.31029 1.16492 0.86863 0.79633 0.80461 0.82781 1.20406 1.21202 1.19172 0.92362 0.91733 0.92617 0.90288 0.90863 0.91914 0.92265 0.84643 0.84807 0.84114 0.90493 0.94417 0.92873 0.91065 0.96579 0.95455 0.99875 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.37 16 3 C 0.05 0.57 4.74 37.16 0.18 0.75 16 4 O -0.30 -4.18 6.18 -19.44 -0.12 -4.30 16 5 C 0.17 2.40 5.40 -39.22 -0.21 2.19 16 6 C -0.25 -3.22 9.02 -39.37 -0.35 -3.58 16 7 C 0.13 1.66 7.30 -39.44 -0.29 1.37 16 8 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 9 C -0.19 -2.38 10.02 -39.49 -0.40 -2.77 16 10 C -0.04 -0.51 9.66 -39.61 -0.38 -0.90 16 11 C -0.10 -1.58 5.17 -104.46 -0.54 -2.12 16 12 C 0.10 1.69 4.99 -4.98 -0.02 1.67 16 13 N -0.53 -11.27 4.74 -245.83 -1.17 -12.44 16 14 C 0.04 0.85 7.86 60.06 0.47 1.32 16 15 C 0.16 3.97 3.79 -4.97 -0.02 3.95 16 16 C -0.51 -14.52 9.01 -34.44 -0.31 -14.83 16 17 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 20 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.14 1.48 6.30 -52.48 -0.33 1.15 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.14 1.66 8.04 -52.49 -0.42 1.23 16 34 H 0.08 1.26 7.79 -51.93 -0.40 0.86 16 35 H 0.04 0.66 7.83 -51.93 -0.41 0.26 16 36 H 0.05 0.98 4.99 -51.93 -0.26 0.72 16 37 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 38 H 0.02 0.31 7.71 -51.93 -0.40 -0.09 16 39 H 0.03 0.67 6.99 -51.93 -0.36 0.31 16 40 H -0.02 -0.40 7.55 -51.92 -0.39 -0.80 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -31.34 332.75 -8.12 -39.46 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.22 Total: -2.64 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.78 Total: -13.18 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.39 Total: -39.44 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.12 Total: -4.30 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.34 -8.12 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237903521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.267 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds