Wall clock time and date at job start Tue Mar 31 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38712 * 120.04375 * 0.02562 * 5 4 3 7 7 C 1.38345 * 119.91942 * 179.97438 * 6 5 4 8 8 F 1.35096 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38518 * 120.00492 * 0.02587 * 7 6 5 10 10 C 1.38213 * 120.08618 * 359.94954 * 9 7 6 11 11 C 1.38180 * 120.07860 * 359.79475 * 10 9 7 12 12 C 1.50700 * 120.00135 * 180.23286 * 11 10 9 13 13 N 1.46897 * 109.46975 * 260.24684 * 12 11 10 14 14 C 1.46897 * 111.00793 * 293.95828 * 13 12 11 15 15 C 1.46900 * 111.00095 * 169.99684 * 13 12 11 16 16 C 1.50702 * 109.47550 * 190.00181 * 15 13 12 17 17 H 1.07998 * 119.99783 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99853 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99535 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00271 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47235 * 89.99381 * 20 18 16 22 22 H 1.48495 * 109.47016 * 209.99733 * 20 18 16 23 23 H 1.48503 * 109.46906 * 329.99732 * 20 18 16 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.08003 * 120.03847 * 359.94963 * 6 5 4 32 32 H 1.07997 * 119.95504 * 179.97438 * 9 7 6 33 33 H 1.07992 * 119.95885 * 180.02562 * 10 9 7 34 34 H 1.08990 * 109.47178 * 20.25058 * 12 11 10 35 35 H 1.09007 * 109.47137 * 140.25440 * 12 11 10 36 36 H 1.09004 * 109.46747 * 59.99633 * 14 13 12 37 37 H 1.08994 * 109.47686 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46854 * 300.00013 * 14 13 12 39 39 H 1.08995 * 109.47192 * 310.00975 * 15 13 12 40 40 H 1.09008 * 109.46735 * 70.00633 * 15 13 12 41 41 H 0.96997 * 119.99838 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3313 3.8173 0.0014 7 6 3.9620 5.0486 0.0024 8 9 3.2285 6.1831 0.0034 9 6 5.3454 5.1183 0.0013 10 6 6.0975 3.9587 0.0003 11 6 5.4713 2.7270 0.0046 12 6 6.2931 1.4638 0.0088 13 7 6.3631 0.9208 -1.3543 14 6 5.0403 0.4757 -1.8125 15 6 7.3434 -0.1702 -1.4367 16 6 7.5685 -0.5355 -2.8813 17 1 7.0368 -0.0095 -3.6604 18 6 8.4531 -1.5412 -3.2083 19 7 8.6499 -1.8596 -4.4691 20 14 9.3722 -2.4514 -1.8607 21 1 8.5781 -3.6296 -1.4287 22 1 10.6884 -2.9043 -2.3781 23 1 9.5807 -1.5439 -0.7039 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.2527 3.7623 0.0014 32 1 5.8369 6.0799 0.0017 33 1 7.1760 4.0154 -0.0001 34 1 7.2993 1.6862 0.3635 35 1 5.8289 0.7306 0.6685 36 1 4.3511 1.3201 -1.8077 37 1 5.1209 0.0786 -2.8244 38 1 4.6674 -0.3016 -1.1455 39 1 8.2849 0.1531 -0.9927 40 1 6.9664 -1.0389 -0.8967 41 1 9.2719 -2.5674 -4.6991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237903521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:53 Heat of formation + Delta-G solvation = -75.693877 kcal Electronic energy + Delta-G solvation = -22293.196853 eV Core-core repulsion = 18894.212917 eV Total energy + Delta-G solvation = -3398.983937 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.94474 -41.47170 -38.71339 -37.88308 -34.86423 -34.64571 -32.47566 -31.17260 -29.63933 -28.13149 -27.29528 -25.41752 -23.76106 -23.00948 -22.14182 -21.57975 -19.48048 -18.98067 -17.97309 -17.58120 -16.94445 -16.77264 -16.55345 -16.26701 -16.04886 -15.81660 -15.54192 -14.97330 -14.90101 -14.47488 -14.33800 -14.12461 -13.52695 -13.36671 -13.17544 -13.03097 -12.87088 -12.70671 -12.54802 -12.50863 -12.25351 -12.10963 -11.91184 -11.79078 -11.75332 -11.45149 -11.37976 -10.77342 -9.87795 -9.26460 -8.92820 -8.26133 -6.29402 0.09765 0.30429 1.36407 1.38090 1.49310 2.14938 2.36569 2.51985 3.07147 3.19732 3.47509 3.69217 3.83785 3.92940 3.93568 4.04458 4.09334 4.27301 4.37485 4.52107 4.53835 4.56058 4.62297 4.76011 4.76956 4.81283 4.93746 4.98952 5.01233 5.10330 5.12420 5.17450 5.21680 5.24319 5.33094 5.46006 5.55891 5.76360 6.00677 6.34241 6.38677 6.68042 6.76562 7.34053 8.90719 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.004915 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.808340 B = 5695.766768 C = 7012.123649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.048 3.952 4 O -0.316 6.316 5 C 0.157 3.843 6 C -0.247 4.247 7 C 0.122 3.878 8 F -0.141 7.141 9 C -0.188 4.188 10 C -0.038 4.038 11 C -0.128 4.128 12 C 0.101 3.899 13 N -0.541 5.541 14 C 0.057 3.943 15 C 0.171 3.829 16 C -0.515 4.515 17 H 0.035 0.965 18 C 0.008 3.992 19 N -0.950 5.950 20 Si 0.948 3.052 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.246 1.246 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.019 0.981 39 H 0.035 0.965 40 H -0.016 1.016 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 10.443 14.555 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.026 4.026 4 O -0.230 6.230 5 C 0.111 3.889 6 C -0.267 4.267 7 C 0.103 3.897 8 F -0.120 7.120 9 C -0.206 4.206 10 C -0.056 4.056 11 C -0.129 4.129 12 C -0.026 4.026 13 N -0.265 5.265 14 C -0.091 4.091 15 C 0.044 3.956 16 C -0.553 4.553 17 H 0.053 0.947 18 C -0.189 4.189 19 N -0.590 5.590 20 Si 0.771 3.229 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.169 1.169 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.053 0.947 40 H 0.002 0.998 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.579 10.537 14.135 22.254 hybrid contribution -0.096 -0.975 0.323 1.032 sum -13.675 9.561 14.458 22.079 Atomic orbital electron populations 1.21662 0.92484 1.03122 1.02809 1.21501 0.97416 0.94118 1.03082 1.23144 0.77272 0.99767 1.02410 1.86316 1.22798 1.26147 1.87714 1.18555 0.91501 0.84296 0.94557 1.21195 1.01712 0.90691 1.13083 1.17508 0.89670 0.81358 1.01193 1.91481 1.77517 1.49156 1.93850 1.21245 0.91460 1.00855 1.07073 1.20966 1.01270 0.89451 0.93948 1.19392 0.90714 0.96219 1.06564 1.20885 0.99253 0.92900 0.89556 1.61949 1.07976 1.34546 1.21984 1.22185 0.89605 0.98675 0.98619 1.19969 0.91933 0.88352 0.95308 1.21252 1.24218 1.17599 0.92244 0.94683 1.25846 0.97536 0.97693 0.97848 1.70055 1.37842 1.32055 1.19093 0.85705 0.78063 0.79289 0.79827 1.19494 1.20636 1.16921 0.91941 0.91250 0.91358 0.92101 0.91242 0.91290 0.90416 0.82761 0.82416 0.82630 0.89366 0.94534 0.91062 0.94561 0.96274 0.94705 0.99804 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -2.27 6.30 30.59 0.19 -2.08 16 3 C 0.05 0.95 4.74 71.98 0.34 1.29 16 4 O -0.32 -8.61 6.18 -92.47 -0.57 -9.18 16 5 C 0.16 4.33 5.40 22.50 0.12 4.45 16 6 C -0.25 -5.89 9.02 22.41 0.20 -5.68 16 7 C 0.12 2.91 7.30 22.36 0.16 3.08 16 8 F -0.14 -3.33 17.27 44.97 0.78 -2.55 16 9 C -0.19 -4.18 10.02 22.33 0.22 -3.96 16 10 C -0.04 -0.94 9.66 22.25 0.21 -0.72 16 11 C -0.13 -3.75 5.17 -19.76 -0.10 -3.85 16 12 C 0.10 3.44 4.99 85.56 0.43 3.86 16 13 N -0.54 -23.19 4.74 -931.67 -4.42 -27.61 16 14 C 0.06 2.36 7.86 127.69 1.00 3.37 16 15 C 0.17 8.37 3.79 85.56 0.32 8.69 16 16 C -0.51 -30.36 9.01 25.60 0.23 -30.13 16 17 H 0.03 2.32 7.37 -2.91 -0.02 2.30 16 18 C 0.01 0.46 5.47 84.66 0.46 0.92 16 19 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 20 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 30 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 31 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 32 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.16 3.29 8.04 -2.91 -0.02 3.27 16 34 H 0.09 2.73 7.79 -2.39 -0.02 2.72 16 35 H 0.04 1.24 7.83 -2.38 -0.02 1.22 16 36 H 0.07 2.65 4.99 -2.39 -0.01 2.64 16 37 H 0.04 1.71 6.76 -2.39 -0.02 1.69 16 38 H 0.02 0.76 7.71 -2.39 -0.02 0.74 16 39 H 0.03 1.65 6.99 -2.39 -0.02 1.63 16 40 H -0.02 -0.76 7.55 -2.38 -0.02 -0.78 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -68.51 332.75 3.44 -65.07 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.96 Total: 9.85 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.52 Total: -21.93 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -4.12 Total: -87.37 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.57 Total: -9.18 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -68.51 3.44 -65.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237903521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.628 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds