Wall clock time and date at job start Tue Mar 31 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47537 * 2 1 4 4 N 1.46902 * 109.47670 * 180.63966 * 3 2 1 5 5 C 1.46892 * 111.00335 * 196.05258 * 4 3 2 6 6 C 1.50698 * 109.46973 * 66.04724 * 5 4 3 7 7 H 1.07997 * 120.00585 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99734 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00085 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47235 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47290 * 119.99794 * 10 8 6 13 13 H 1.48503 * 109.46925 * 239.99604 * 10 8 6 14 14 C 1.46908 * 110.99465 * 72.09994 * 4 3 2 15 15 C 1.50699 * 109.46492 * 199.61850 * 14 4 3 16 16 C 1.38178 * 120.01250 * 254.51994 * 15 14 4 17 17 C 1.38431 * 120.02783 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.96819 * 180.02562 * 17 16 15 19 19 C 1.38480 * 120.06156 * 0.02562 * 17 16 15 20 20 C 1.38125 * 120.02951 * 359.97438 * 19 17 16 21 21 C 1.50709 * 120.01431 * 179.97438 * 20 19 17 22 22 C 1.38682 * 120.01729 * 74.25223 * 15 14 4 23 23 O 1.35944 * 120.02978 * 359.97402 * 22 15 14 24 24 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47104 * 300.00469 * 1 2 3 26 26 H 1.08998 * 109.47059 * 60.00098 * 1 2 3 27 27 H 1.09000 * 109.47104 * 239.99531 * 2 1 3 28 28 H 1.09004 * 109.46788 * 119.99575 * 2 1 3 29 29 H 1.09003 * 109.47353 * 60.63760 * 3 2 1 30 30 H 1.09007 * 109.46901 * 300.64157 * 3 2 1 31 31 H 1.08999 * 109.47176 * 186.04601 * 5 4 3 32 32 H 1.09006 * 109.47120 * 306.04894 * 5 4 3 33 33 H 0.97004 * 120.00183 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47214 * 319.61629 * 14 4 3 35 35 H 1.08995 * 109.47408 * 79.61867 * 14 4 3 36 36 H 1.07997 * 119.98781 * 0.02562 * 16 15 14 37 37 H 1.08007 * 119.98211 * 179.97438 * 19 17 16 38 38 H 1.08999 * 109.46687 * 90.00171 * 21 20 19 39 39 H 1.08999 * 109.46693 * 210.00652 * 21 20 19 40 40 H 1.08998 * 109.46705 * 330.00171 * 21 20 19 41 41 H 0.96702 * 114.00117 * 90.00326 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0155 5 6 4.0395 2.7589 0.3631 6 6 3.6961 3.0438 1.8025 7 1 3.1392 2.3196 2.3784 8 6 4.0921 4.2296 2.3840 9 7 4.7699 5.1118 1.6826 10 14 3.6671 4.5825 4.1684 11 1 2.9058 3.4386 4.7315 12 1 4.9173 4.7763 4.9460 13 1 2.8400 5.8134 4.2462 14 6 4.0216 1.0258 -1.3277 15 6 5.4526 0.5746 -1.1876 16 6 6.4792 1.3823 -1.6380 17 6 7.7939 0.9684 -1.5090 18 9 8.7967 1.7594 -1.9494 19 6 8.0820 -0.2557 -0.9291 20 6 7.0577 -1.0651 -0.4780 21 6 7.3717 -2.3974 0.1526 22 6 5.7400 -0.6491 -0.6016 23 8 4.7313 -1.4421 -0.1526 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6861 1.9530 0.8957 30 1 1.6674 1.9595 -0.8842 31 1 5.1225 2.7633 0.2402 32 1 3.5983 3.5253 -0.2743 33 1 5.0482 5.9462 2.0915 34 1 3.4169 0.2031 -1.7094 35 1 3.9716 1.8655 -2.0207 36 1 6.2559 2.3373 -2.0901 37 1 9.1082 -0.5775 -0.8295 38 1 7.4990 -2.2695 1.2275 39 1 6.5522 -3.0909 -0.0365 40 1 8.2908 -2.7952 -0.2774 41 1 4.3936 -2.0614 -0.8141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238062819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:35 Heat of formation + Delta-G solvation = -74.000063 kcal Electronic energy + Delta-G solvation = -22606.964070 eV Core-core repulsion = 19208.053583 eV Total energy + Delta-G solvation = -3398.910487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.59607 -39.80245 -37.00361 -36.15644 -33.37585 -32.89026 -31.73758 -29.74832 -27.29868 -26.78127 -25.99914 -24.02842 -21.90823 -21.28190 -20.90374 -19.66377 -18.10142 -16.76321 -16.59059 -16.30488 -15.53124 -15.11084 -14.86999 -14.48785 -14.43968 -13.75044 -13.66061 -13.44228 -13.26969 -13.06454 -12.71878 -12.62144 -12.15122 -11.97310 -11.70460 -11.65008 -11.50506 -11.22103 -11.12378 -10.95374 -10.76647 -10.63175 -10.28900 -10.12828 -9.95818 -9.72283 -9.13400 -8.54377 -8.39339 -8.07895 -7.18490 -5.98695 -3.98959 1.35184 1.40553 3.33278 3.40704 3.45818 3.65903 4.42184 4.46154 4.47708 4.83438 4.92437 5.07750 5.28386 5.37141 5.43859 5.47497 5.56133 5.63045 5.67396 5.70450 5.83806 5.87981 5.92143 6.11451 6.15562 6.22715 6.28579 6.30291 6.36195 6.46574 6.48935 6.72389 6.80383 6.88759 7.02545 7.34751 7.36989 7.85047 7.94520 8.14306 8.25738 8.58957 9.08959 9.64684 11.12324 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.006588 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.319519 B = 4249.361818 C = 5581.617376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.063 3.937 4 N -0.522 5.522 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.096 3.904 15 C -0.053 4.053 16 C -0.132 4.132 17 C 0.090 3.910 18 F -0.143 7.143 19 C -0.149 4.149 20 C -0.093 4.093 21 C -0.103 4.103 22 C 0.120 3.880 23 O -0.471 6.471 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.015 0.985 31 H 0.032 0.968 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -14.024 -8.056 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.065 4.065 4 N -0.245 5.245 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.032 4.032 15 C -0.055 4.055 16 C -0.152 4.152 17 C 0.071 3.929 18 F -0.122 7.122 19 C -0.168 4.168 20 C -0.094 4.094 21 C -0.160 4.160 22 C 0.075 3.925 23 O -0.279 6.279 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.135 -13.837 -7.168 15.625 hybrid contribution -0.199 1.037 -0.092 1.060 sum 0.936 -12.800 -7.260 14.746 Atomic orbital electron populations 1.21749 0.96837 1.00695 1.01494 1.21511 0.93994 0.97827 1.01944 1.22027 0.88286 0.95269 1.00900 1.62075 1.06568 1.32525 1.23376 1.19771 0.95591 0.82102 0.95875 1.21188 1.34797 1.01952 0.96196 0.91806 1.24979 0.95384 0.96226 0.98047 1.69969 1.38646 1.08799 1.36414 0.86485 0.78105 0.78081 0.85046 1.19637 1.21072 1.21159 1.20870 0.90603 0.98933 0.92814 1.20052 0.96146 0.93651 0.95601 1.20978 0.90504 1.00745 1.02961 1.17570 0.84726 0.90134 1.00461 1.91473 1.59726 1.73492 1.87496 1.20744 0.99855 0.93802 1.02420 1.19962 0.92211 0.97452 0.99738 1.20611 1.01665 0.92873 1.00818 1.17967 0.86479 0.91111 0.96958 1.85008 1.51041 1.52296 1.39576 0.93380 0.92773 0.93416 0.93126 0.91195 0.89598 0.96679 0.94983 0.99430 0.93071 0.90863 0.94837 0.84690 0.85008 0.90791 0.91293 0.91875 0.77066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.57 16 2 C -0.11 -1.75 6.01 -26.74 -0.16 -1.91 16 3 C 0.06 1.21 4.80 -3.83 -0.02 1.19 16 4 N -0.52 -11.11 4.37 -237.52 -1.04 -12.15 16 5 C 0.19 5.03 4.55 -4.98 -0.02 5.01 16 6 C -0.50 -14.34 8.28 -34.44 -0.29 -14.63 16 7 H 0.06 1.82 7.26 -52.49 -0.38 1.44 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.10 1.69 4.56 -4.97 -0.02 1.67 16 15 C -0.05 -0.92 4.82 -104.48 -0.50 -1.42 16 16 C -0.13 -2.31 9.00 -39.53 -0.36 -2.67 16 17 C 0.09 1.50 7.30 -39.42 -0.29 1.21 16 18 F -0.14 -2.41 17.27 2.25 0.04 -2.37 16 19 C -0.15 -2.17 9.68 -39.53 -0.38 -2.55 16 20 C -0.09 -1.32 5.89 -104.48 -0.62 -1.94 16 21 C -0.10 -1.12 9.79 36.01 0.35 -0.77 16 22 C 0.12 1.89 6.65 -39.24 -0.26 1.63 16 23 O -0.47 -6.66 11.90 -19.56 -0.23 -6.89 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.70 6.53 -51.93 -0.34 0.36 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.85 6.59 -51.93 -0.34 1.51 16 30 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 31 H 0.03 0.91 6.90 -51.93 -0.36 0.55 16 32 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 1.10 6.13 -51.93 -0.32 0.78 16 35 H 0.03 0.60 7.81 -51.93 -0.41 0.20 16 36 H 0.14 2.34 8.00 -52.49 -0.42 1.92 16 37 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.66 7.54 -51.93 -0.39 0.27 16 40 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.37 3.34 9.06 45.56 0.41 3.76 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -32.08 341.50 -8.13 -40.21 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.47 Total: 0.64 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.29 Total: -15.27 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.30 Total: -38.58 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.23 Total: -6.89 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.08 -8.13 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238062819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.786 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds