Wall clock time and date at job start Tue Mar 31 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47537 * 2 1 4 4 N 1.46902 * 109.47670 * 180.63966 * 3 2 1 5 5 C 1.46892 * 111.00335 * 196.05258 * 4 3 2 6 6 C 1.50698 * 109.46973 * 66.04724 * 5 4 3 7 7 H 1.07997 * 120.00585 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99734 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00085 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47235 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47290 * 119.99794 * 10 8 6 13 13 H 1.48503 * 109.46925 * 239.99604 * 10 8 6 14 14 C 1.46908 * 110.99465 * 72.09994 * 4 3 2 15 15 C 1.50699 * 109.46492 * 199.61850 * 14 4 3 16 16 C 1.38178 * 120.01250 * 254.51994 * 15 14 4 17 17 C 1.38431 * 120.02783 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.96819 * 180.02562 * 17 16 15 19 19 C 1.38480 * 120.06156 * 0.02562 * 17 16 15 20 20 C 1.38125 * 120.02951 * 359.97438 * 19 17 16 21 21 C 1.50709 * 120.01431 * 179.97438 * 20 19 17 22 22 C 1.38682 * 120.01729 * 74.25223 * 15 14 4 23 23 O 1.35944 * 120.02978 * 359.97402 * 22 15 14 24 24 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47104 * 300.00469 * 1 2 3 26 26 H 1.08998 * 109.47059 * 60.00098 * 1 2 3 27 27 H 1.09000 * 109.47104 * 239.99531 * 2 1 3 28 28 H 1.09004 * 109.46788 * 119.99575 * 2 1 3 29 29 H 1.09003 * 109.47353 * 60.63760 * 3 2 1 30 30 H 1.09007 * 109.46901 * 300.64157 * 3 2 1 31 31 H 1.08999 * 109.47176 * 186.04601 * 5 4 3 32 32 H 1.09006 * 109.47120 * 306.04894 * 5 4 3 33 33 H 0.97004 * 120.00183 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47214 * 319.61629 * 14 4 3 35 35 H 1.08995 * 109.47408 * 79.61867 * 14 4 3 36 36 H 1.07997 * 119.98781 * 0.02562 * 16 15 14 37 37 H 1.08007 * 119.98211 * 179.97438 * 19 17 16 38 38 H 1.08999 * 109.46687 * 90.00171 * 21 20 19 39 39 H 1.08999 * 109.46693 * 210.00652 * 21 20 19 40 40 H 1.08998 * 109.46705 * 330.00171 * 21 20 19 41 41 H 0.96702 * 114.00117 * 90.00326 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0155 5 6 4.0395 2.7589 0.3631 6 6 3.6961 3.0438 1.8025 7 1 3.1392 2.3196 2.3784 8 6 4.0921 4.2296 2.3840 9 7 4.7699 5.1118 1.6826 10 14 3.6671 4.5825 4.1684 11 1 2.9058 3.4386 4.7315 12 1 4.9173 4.7763 4.9460 13 1 2.8400 5.8134 4.2462 14 6 4.0216 1.0258 -1.3277 15 6 5.4526 0.5746 -1.1876 16 6 6.4792 1.3823 -1.6380 17 6 7.7939 0.9684 -1.5090 18 9 8.7967 1.7594 -1.9494 19 6 8.0820 -0.2557 -0.9291 20 6 7.0577 -1.0651 -0.4780 21 6 7.3717 -2.3974 0.1526 22 6 5.7400 -0.6491 -0.6016 23 8 4.7313 -1.4421 -0.1526 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6861 1.9530 0.8957 30 1 1.6674 1.9595 -0.8842 31 1 5.1225 2.7633 0.2402 32 1 3.5983 3.5253 -0.2743 33 1 5.0482 5.9462 2.0915 34 1 3.4169 0.2031 -1.7094 35 1 3.9716 1.8655 -2.0207 36 1 6.2559 2.3373 -2.0901 37 1 9.1082 -0.5775 -0.8295 38 1 7.4990 -2.2695 1.2275 39 1 6.5522 -3.0909 -0.0365 40 1 8.2908 -2.7952 -0.2774 41 1 4.3936 -2.0614 -0.8141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238062819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:35 Heat of formation + Delta-G solvation = -95.071424 kcal Electronic energy + Delta-G solvation = -22607.877793 eV Core-core repulsion = 19208.053583 eV Total energy + Delta-G solvation = -3399.824210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89962 -41.02822 -38.58852 -37.31040 -34.96126 -34.54744 -33.18212 -31.07872 -29.18490 -27.84487 -27.34923 -25.80830 -23.40202 -22.69316 -22.16557 -21.19036 -19.25475 -18.58692 -17.90909 -17.89170 -16.82343 -16.71244 -16.32712 -16.10012 -15.95007 -15.29158 -14.98056 -14.75535 -14.52865 -14.13822 -14.01499 -13.88583 -13.80690 -13.57238 -13.02045 -12.96232 -12.76738 -12.66953 -12.63482 -12.46565 -12.39859 -12.26286 -11.96756 -11.60951 -11.40026 -11.24268 -11.12632 -10.62763 -9.77650 -9.30395 -8.95200 -8.21276 -6.30401 0.12345 0.17296 1.37054 1.38125 1.51710 2.37191 2.44189 3.11178 3.21418 3.33781 3.42764 3.71924 3.77581 4.07250 4.16517 4.28973 4.36439 4.44444 4.50325 4.64546 4.66557 4.77101 4.77514 4.85891 4.96726 4.97696 5.02647 5.11090 5.20839 5.23019 5.29975 5.30861 5.33781 5.47538 5.51351 5.59311 5.65932 5.85806 6.07304 6.39836 6.65983 6.86836 7.01471 7.38774 8.89939 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.006588 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.319519 B = 4249.361818 C = 5581.617376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C 0.062 3.938 4 N -0.525 5.525 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.061 0.939 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.099 3.901 15 C -0.077 4.077 16 C -0.153 4.153 17 C 0.070 3.930 18 F -0.150 7.150 19 C -0.141 4.141 20 C -0.092 4.092 21 C -0.100 4.100 22 C 0.124 3.876 23 O -0.479 6.479 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.003 0.997 32 H -0.045 1.045 33 H 0.263 0.737 34 H 0.106 0.894 35 H 0.022 0.978 36 H 0.119 0.881 37 H 0.161 0.839 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -16.757 -7.319 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.066 4.066 4 N -0.249 5.249 5 C 0.085 3.915 6 C -0.556 4.556 7 H 0.079 0.921 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.202 1.202 14 C -0.029 4.029 15 C -0.078 4.078 16 C -0.173 4.173 17 C 0.051 3.949 18 F -0.129 7.129 19 C -0.160 4.160 20 C -0.092 4.092 21 C -0.157 4.157 22 C 0.078 3.922 23 O -0.291 6.291 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.021 0.979 32 H -0.028 1.028 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.040 0.960 36 H 0.137 0.863 37 H 0.178 0.822 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.651 -16.604 -6.454 17.826 hybrid contribution -0.064 1.833 -0.378 1.873 sum 0.587 -14.771 -6.832 16.285 Atomic orbital electron populations 1.21718 0.94765 1.02351 1.01490 1.21395 0.95654 0.94510 1.02354 1.22088 0.86962 0.98072 0.99473 1.62012 1.07894 1.29066 1.25914 1.19341 0.93657 0.83936 0.94608 1.21479 1.34701 1.02148 0.97240 0.92128 1.25901 0.95105 0.95968 1.02775 1.70102 1.39658 1.09319 1.38493 0.85388 0.78046 0.78295 0.79262 1.18653 1.20589 1.20202 1.20923 0.91718 0.99493 0.90719 1.20087 0.95538 0.94833 0.97342 1.20992 0.91605 1.00588 1.04098 1.17781 0.84221 0.91214 1.01662 1.91447 1.59770 1.73897 1.87740 1.21096 1.01544 0.92557 1.00826 1.20360 0.91332 0.98765 0.98784 1.20700 1.03626 0.91071 1.00276 1.18053 0.87621 0.90649 0.95874 1.84936 1.50723 1.52634 1.40793 0.90839 0.93635 0.92669 0.91002 0.92323 0.92643 0.96502 0.97922 1.02756 0.92839 0.87582 0.95971 0.86313 0.82154 0.91109 0.89646 0.89373 0.74125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.10 -2.89 6.01 30.59 0.18 -2.71 16 3 C 0.06 2.38 4.80 86.30 0.41 2.80 16 4 N -0.53 -22.85 4.37 -905.37 -3.96 -26.81 16 5 C 0.21 11.65 4.55 85.56 0.39 12.04 16 6 C -0.52 -30.42 8.28 25.60 0.21 -30.20 16 7 H 0.06 3.53 7.26 -2.91 -0.02 3.50 16 8 C 0.00 0.01 5.46 84.66 0.46 0.47 16 9 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 10 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.10 3.53 4.56 85.56 0.39 3.92 16 15 C -0.08 -2.68 4.82 -19.77 -0.10 -2.78 16 16 C -0.15 -5.63 9.00 22.30 0.20 -5.43 16 17 C 0.07 2.37 7.30 22.37 0.16 2.53 16 18 F -0.15 -5.17 17.27 44.97 0.78 -4.39 16 19 C -0.14 -3.90 9.68 22.30 0.22 -3.68 16 20 C -0.09 -2.40 5.89 -19.77 -0.12 -2.52 16 21 C -0.10 -1.82 9.79 71.24 0.70 -1.12 16 22 C 0.12 3.71 6.65 22.49 0.15 3.86 16 23 O -0.48 -12.26 11.90 -92.92 -1.11 -13.37 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.75 6.53 -2.39 -0.02 1.73 16 28 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.06 2.45 6.59 -2.39 -0.02 2.44 16 30 H 0.02 0.63 8.05 -2.38 -0.02 0.61 16 31 H 0.00 0.16 6.90 -2.39 -0.02 0.15 16 32 H -0.05 -2.72 8.12 -2.38 -0.02 -2.74 16 33 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 34 H 0.11 3.00 6.13 -2.39 -0.01 2.99 16 35 H 0.02 0.83 7.81 -2.39 -0.02 0.81 16 36 H 0.12 4.56 8.00 -2.91 -0.02 4.53 16 37 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.28 7.54 -2.39 -0.02 1.26 16 40 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.40 5.67 9.06 -74.06 -0.67 5.00 16 Total: -1.00 -71.84 341.50 2.36 -69.48 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.36 Total: 10.69 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 3.98 Total: -25.51 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.67 Total: -84.82 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.11 Total: -13.37 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.84 2.36 -69.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238062819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.594 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds