Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46702 * 2 1 4 4 C 1.53002 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47026 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00344 * 269.99669 * 5 4 3 7 7 H 1.07991 * 119.99760 * 319.26140 * 6 5 4 8 8 C 1.38811 * 119.99837 * 139.25715 * 6 5 4 9 9 N 1.31622 * 119.99764 * 160.72987 * 8 6 5 10 10 Si 1.86795 * 120.00110 * 340.73471 * 8 6 5 11 11 H 1.48501 * 109.47335 * 95.18278 * 10 8 6 12 12 H 1.48507 * 109.46954 * 215.18319 * 10 8 6 13 13 H 1.48498 * 109.47240 * 335.18204 * 10 8 6 14 14 C 1.46502 * 119.99887 * 90.00466 * 5 4 3 15 15 C 1.50694 * 109.47639 * 84.35342 * 14 5 4 16 16 C 1.38166 * 120.01869 * 258.37420 * 15 14 5 17 17 C 1.38438 * 120.03127 * 179.69751 * 16 15 14 18 18 F 1.35102 * 119.97049 * 179.97438 * 17 16 15 19 19 C 1.38469 * 120.06010 * 0.02751 * 17 16 15 20 20 C 1.38129 * 120.03277 * 359.97438 * 19 17 16 21 21 C 1.50700 * 120.01633 * 179.97438 * 20 19 17 22 22 C 1.38688 * 120.01100 * 78.09921 * 15 14 5 23 23 O 1.35942 * 120.03239 * 0.25190 * 22 15 14 24 24 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47468 * 299.99706 * 1 2 3 26 26 H 1.08999 * 109.47699 * 60.00080 * 1 2 3 27 27 H 1.09000 * 109.46963 * 240.00328 * 2 1 3 28 28 H 1.08999 * 109.47118 * 119.99428 * 2 1 3 29 29 H 1.08999 * 109.47605 * 60.00178 * 3 2 1 30 30 H 1.09003 * 109.47517 * 299.99871 * 3 2 1 31 31 H 1.08999 * 109.46977 * 59.99567 * 4 3 2 32 32 H 1.08995 * 109.46882 * 299.99914 * 4 3 2 33 33 H 0.96997 * 119.99963 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47001 * 324.35455 * 14 5 4 35 35 H 1.08995 * 109.47265 * 204.35982 * 14 5 4 36 36 H 1.08002 * 119.98780 * 359.72320 * 16 15 14 37 37 H 1.08006 * 119.98746 * 179.97438 * 19 17 16 38 38 H 1.08997 * 109.47170 * 90.00480 * 21 20 19 39 39 H 1.09005 * 109.46744 * 209.99708 * 21 20 19 40 40 H 1.08999 * 109.47401 * 329.99729 * 21 20 19 41 41 H 0.96697 * 113.99822 * 94.83951 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.2859 3.4691 -1.1874 7 1 4.7465 2.9414 -2.0093 8 6 3.9246 4.8014 -1.3333 9 7 4.4614 5.5277 -2.2908 10 14 2.6769 5.5635 -0.1706 11 1 3.3879 6.2496 0.9379 12 1 1.8473 6.5478 -0.9110 13 1 1.8036 4.4988 0.3853 14 6 4.3029 3.5148 1.2672 15 6 5.6795 3.1665 1.7716 16 6 5.8308 2.2334 2.7794 17 6 7.0958 1.9086 3.2386 18 9 7.2423 0.9965 4.2244 19 6 8.2109 2.5186 2.6893 20 6 8.0626 3.4518 1.6818 21 6 9.2765 4.1158 1.0846 22 6 6.7956 3.7782 1.2205 23 8 6.6482 4.6960 0.2286 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9336 0.9287 0.8891 33 1 4.2092 6.4588 -2.3925 34 1 3.5581 3.2040 1.9998 35 1 4.2339 4.5917 1.1135 36 1 4.9619 1.7569 3.2087 37 1 9.1972 2.2646 3.0488 38 1 9.6329 3.5281 0.2386 39 1 9.0127 5.1176 0.7456 40 1 10.0618 4.1820 1.8376 41 1 6.6251 5.6112 0.5399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238071321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = -73.098460 kcal Electronic energy + Delta-G solvation = -22863.766756 eV Core-core repulsion = 19464.895365 eV Total energy + Delta-G solvation = -3398.871391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.83628 -40.90214 -38.15286 -37.20358 -35.60463 -34.11521 -33.15888 -31.06526 -29.59117 -27.84108 -27.39692 -25.63432 -23.15457 -22.54596 -22.17066 -21.41349 -19.18255 -18.81785 -17.93398 -17.69042 -17.02657 -16.61486 -16.21574 -16.11030 -15.80764 -15.22249 -14.87989 -14.73724 -14.56381 -14.28436 -14.17376 -14.04647 -13.68814 -13.52234 -13.28336 -13.02354 -12.74592 -12.62958 -12.55172 -12.35560 -12.17161 -11.87898 -11.85632 -11.72947 -11.49569 -11.29199 -11.18684 -10.51588 -9.74225 -9.24278 -8.65276 -8.02633 -5.44663 0.17720 0.23460 1.31224 1.45880 1.54827 2.47666 2.50963 3.23428 3.30982 3.44991 3.50599 3.78317 3.84048 4.13412 4.14540 4.25571 4.37113 4.40187 4.48650 4.54187 4.64141 4.72497 4.79489 4.82348 4.83966 4.99391 5.00910 5.04584 5.07577 5.15180 5.17848 5.28377 5.34850 5.39685 5.49036 5.60488 5.62803 5.90902 6.08413 6.32076 7.04023 7.09611 7.73574 8.15929 9.16956 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.007567 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.467234 B = 3699.155585 C = 5261.513438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.150 3.850 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.024 0.976 8 C 0.012 3.988 9 N -0.938 5.938 10 Si 0.924 3.076 11 H -0.273 1.273 12 H -0.316 1.316 13 H -0.259 1.259 14 C 0.175 3.825 15 C -0.102 4.102 16 C -0.143 4.143 17 C 0.076 3.924 18 F -0.144 7.144 19 C -0.144 4.144 20 C -0.098 4.098 21 C -0.102 4.102 22 C 0.102 3.898 23 O -0.473 6.473 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -6.089 12.212 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.170 4.170 4 C 0.025 3.975 5 N -0.323 5.323 6 C -0.361 4.361 7 H 0.041 0.959 8 C -0.186 4.186 9 N -0.582 5.582 10 Si 0.754 3.246 11 H -0.200 1.200 12 H -0.245 1.245 13 H -0.183 1.183 14 C 0.050 3.950 15 C -0.106 4.106 16 C -0.162 4.162 17 C 0.057 3.943 18 F -0.123 7.123 19 C -0.163 4.163 20 C -0.099 4.099 21 C -0.158 4.158 22 C 0.056 3.944 23 O -0.282 6.282 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.870 -6.480 11.771 13.740 hybrid contribution -0.586 1.054 0.321 1.247 sum 2.285 -5.426 12.092 13.449 Atomic orbital electron populations 1.21749 0.95343 1.02027 1.01419 1.21453 0.96306 0.95539 1.02152 1.22065 0.97491 0.96994 1.00422 1.21007 0.92435 0.84721 0.99349 1.44139 1.74839 1.12420 1.00897 1.18246 1.32638 0.94452 0.90801 0.95876 1.25745 0.98489 0.97051 0.97273 1.69988 1.44059 1.07583 1.36574 0.86167 0.81446 0.77934 0.79056 1.20044 1.24543 1.18274 1.20132 0.90489 0.96626 0.87768 1.21051 0.98072 0.97355 0.94099 1.20957 0.96778 0.99789 0.98699 1.17645 0.94538 0.92096 0.90008 1.91458 1.96632 1.64587 1.59618 1.21002 0.98853 0.98245 0.98190 1.20338 0.95310 0.98184 0.96070 1.20658 0.93864 1.00275 1.00997 1.18556 0.91563 0.94628 0.89662 1.85257 1.95199 1.17776 1.29969 0.91299 0.92858 0.93680 0.92251 0.91035 0.93308 0.94511 0.94548 0.92420 0.93317 0.91738 0.93074 0.83736 0.82334 0.91244 0.91372 0.89009 0.76264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.13 5.93 30.60 0.18 -2.95 16 3 C -0.13 -4.57 5.54 30.60 0.17 -4.40 16 4 C 0.15 5.85 5.69 86.38 0.49 6.34 16 5 N -0.60 -27.65 2.02 -706.38 -1.42 -29.07 16 6 C -0.23 -12.84 8.94 84.03 0.75 -12.09 16 7 H 0.02 1.51 8.06 -2.92 -0.02 1.48 16 8 C 0.01 0.65 4.98 84.86 0.42 1.07 16 9 N -0.94 -56.60 13.97 21.65 0.30 -56.30 16 10 Si 0.92 44.40 24.99 68.60 1.71 46.12 16 11 H -0.27 -12.28 6.72 99.48 0.67 -11.61 16 12 H -0.32 -15.77 7.11 99.48 0.71 -15.06 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 C 0.17 7.16 4.05 85.63 0.35 7.50 16 15 C -0.10 -3.78 5.47 -19.78 -0.11 -3.89 16 16 C -0.14 -4.49 9.64 22.30 0.22 -4.28 16 17 C 0.08 2.24 7.30 22.37 0.16 2.40 16 18 F -0.14 -4.05 17.27 44.97 0.78 -3.27 16 19 C -0.14 -3.91 9.68 22.30 0.22 -3.70 16 20 C -0.10 -2.98 5.89 -19.77 -0.12 -3.10 16 21 C -0.10 -2.49 9.79 71.24 0.70 -1.79 16 22 C 0.10 3.79 6.65 22.50 0.15 3.94 16 23 O -0.47 -19.76 10.50 -92.90 -0.98 -20.74 16 24 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 32 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 35 H 0.05 2.27 3.53 -2.39 -0.01 2.27 16 36 H 0.14 3.99 8.02 -2.91 -0.02 3.96 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.71 7.53 -2.38 -0.02 1.69 16 40 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 41 H 0.38 13.29 9.06 -74.06 -0.67 12.62 16 Total: -1.00 -65.36 339.00 5.00 -60.36 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.31 Total: 20.63 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.29 Total: -17.73 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.12 Total: -85.37 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.98 Total: -20.74 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.71 Total: 46.12 kcal Total: -65.36 5.00 -60.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238071321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.734 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds