Wall clock time and date at job start Tue Mar 31 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47033 * 2 1 4 4 C 1.52995 * 109.47432 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47738 * 174.77224 * 4 3 2 6 6 C 1.46896 * 111.00150 * 195.94291 * 5 4 3 7 7 C 1.50699 * 109.47344 * 65.57054 * 6 5 4 8 8 H 1.07998 * 119.99902 * 5.15705 * 7 6 5 9 9 C 1.37875 * 120.00129 * 185.14904 * 7 6 5 10 10 N 1.31512 * 120.00184 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99883 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47385 * 89.99686 * 11 9 7 13 13 H 1.48501 * 109.47067 * 209.99305 * 11 9 7 14 14 H 1.48498 * 109.47108 * 329.99275 * 11 9 7 15 15 C 1.46897 * 111.00202 * 71.98388 * 5 4 3 16 16 C 1.50695 * 109.47177 * 190.00193 * 15 5 4 17 17 C 1.39371 * 120.47448 * 90.00266 * 16 15 5 18 18 N 1.39173 * 120.85334 * 0.02562 * 17 16 15 19 19 C 1.39535 * 118.30091 * 180.02562 * 17 16 15 20 20 C 1.37840 * 119.12606 * 359.97438 * 19 17 16 21 21 N 1.32037 * 120.87484 * 0.02562 * 20 19 17 22 22 C 1.32185 * 121.86997 * 359.70534 * 21 20 19 23 23 F 1.35099 * 119.61291 * 180.31076 * 22 21 20 24 24 H 1.08994 * 109.46935 * 299.99860 * 1 2 3 25 25 H 1.09001 * 109.46936 * 59.99915 * 1 2 3 26 26 H 1.09000 * 109.46889 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46935 * 240.00140 * 2 1 3 28 28 H 1.09001 * 109.46936 * 120.00085 * 2 1 3 29 29 H 1.09005 * 109.47273 * 59.99771 * 3 2 1 30 30 H 1.09003 * 109.47114 * 300.00349 * 3 2 1 31 31 H 1.09001 * 109.47255 * 54.76159 * 4 3 2 32 32 H 1.09002 * 109.46876 * 294.77305 * 4 3 2 33 33 H 1.09001 * 109.47410 * 185.57514 * 6 5 4 34 34 H 1.09006 * 109.47035 * 305.57320 * 6 5 4 35 35 H 0.97003 * 120.00305 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.46747 * 310.00543 * 15 5 4 37 37 H 1.09001 * 109.47230 * 70.00189 * 15 5 4 38 38 H 0.97011 * 119.99842 * 0.02562 * 18 17 16 39 39 H 0.97003 * 120.00652 * 180.02562 * 18 17 16 40 40 H 1.07991 * 120.43733 * 179.97438 * 19 17 16 41 41 H 1.07999 * 119.56736 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8218 -0.1268 6 6 5.4782 2.8440 -0.5077 7 6 5.6359 2.2689 -1.8917 8 1 4.7626 1.9989 -2.4669 9 6 6.8949 2.0877 -2.4236 10 7 7.0325 1.5863 -3.6316 11 14 8.4053 2.5544 -1.4285 12 1 8.8482 1.3873 -0.6240 13 1 9.4968 2.9644 -2.3482 14 1 8.0718 3.6825 -0.5222 15 6 3.8358 3.5755 1.1140 16 6 4.1194 5.0358 0.8728 17 6 3.1050 5.8922 0.4486 18 7 1.8127 5.4195 0.2397 19 6 3.4181 7.2356 0.2386 20 6 4.7094 7.6656 0.4569 21 7 5.6447 6.8248 0.8589 22 6 5.3879 5.5461 1.0741 23 9 6.3783 4.7273 1.4911 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.8498 -0.8402 32 1 3.9337 1.0118 0.9323 33 1 5.8410 3.8718 -0.4978 34 1 6.0540 2.2486 0.2009 35 1 7.9183 1.4584 -4.0057 36 1 2.8000 3.4540 1.4310 37 1 4.5003 3.2000 1.8921 38 1 1.6086 4.4831 0.3898 39 1 1.1161 6.0264 -0.0560 40 1 2.6587 7.9293 -0.0906 41 1 4.9597 8.7038 0.2961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238157930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:18 Heat of formation + Delta-G solvation = -12.768224 kcal Electronic energy + Delta-G solvation = -22875.126953 eV Core-core repulsion = 19511.164428 eV Total energy + Delta-G solvation = -3363.962524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.60371 -39.98940 -37.38394 -35.30979 -34.40423 -32.50204 -31.16991 -29.86497 -28.92681 -27.48780 -25.12138 -22.93523 -22.57019 -22.07036 -20.75123 -19.72299 -17.96746 -17.92806 -16.89580 -15.88258 -15.70945 -15.34914 -15.20320 -14.89312 -14.65169 -14.27666 -13.93835 -13.66100 -13.17072 -13.06895 -12.96430 -12.74936 -12.47737 -12.22218 -12.06399 -11.60157 -11.53112 -11.33054 -10.95836 -10.78805 -10.73437 -10.59653 -10.24227 -9.97215 -9.75332 -9.34990 -9.20921 -8.63694 -8.51826 -7.95122 -7.41739 -6.01524 -3.98474 1.23763 1.65225 3.35292 3.43328 3.53839 3.66304 3.91935 4.07040 4.49570 4.70688 4.80642 4.94305 5.11676 5.16362 5.31478 5.32054 5.33493 5.48564 5.54938 5.67874 5.83171 5.92251 5.95674 5.97423 5.98769 6.02994 6.10196 6.17909 6.27173 6.41624 6.62078 6.72969 6.83376 6.94822 7.03323 7.32801 7.65081 7.68288 7.86964 8.03052 8.06472 8.67622 9.06102 9.61625 11.11123 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.009518 B = 0.009114 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.985873 B = 3071.486814 C = 5308.103154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.113 4.113 4 C 0.057 3.943 5 N -0.520 5.520 6 C 0.163 3.837 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.071 3.929 10 N -0.900 5.900 11 Si 0.865 3.135 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.259 1.259 15 C 0.101 3.899 16 C -0.218 4.218 17 C 0.294 3.706 18 N -0.852 5.852 19 C -0.268 4.268 20 C 0.166 3.834 21 N -0.558 5.558 22 C 0.354 3.646 23 F -0.110 7.110 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.020 0.980 33 H 0.029 0.971 34 H -0.015 1.015 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.406 0.594 39 H 0.400 0.600 40 H 0.135 0.865 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 6.461 10.323 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.070 4.070 5 N -0.244 5.244 6 C 0.037 3.963 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.692 3.308 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.184 1.184 15 C -0.028 4.028 16 C -0.227 4.227 17 C 0.178 3.822 18 N -0.390 5.390 19 C -0.294 4.294 20 C 0.010 3.990 21 N -0.276 5.276 22 C 0.201 3.799 23 F -0.089 7.089 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.003 0.997 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.237 0.763 39 H 0.229 0.771 40 H 0.153 0.847 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.443 6.883 9.973 17.369 hybrid contribution 0.500 -0.739 0.822 1.213 sum -11.943 6.144 10.795 17.232 Atomic orbital electron populations 1.21757 0.96351 1.01111 1.01427 1.21494 0.95220 0.97447 1.02122 1.21629 0.96173 0.95939 1.01369 1.22100 0.93605 0.90322 1.01016 1.62108 1.21926 1.12553 1.27818 1.20226 0.82906 0.96783 0.96410 1.20989 0.93995 1.41189 0.98439 0.90177 1.24857 0.98696 0.94696 0.94820 1.69889 1.23246 1.45292 1.15528 0.86988 0.83285 0.79880 0.80642 1.20339 1.21181 1.18359 1.20704 1.00274 0.88727 0.93097 1.19866 0.92609 0.97589 1.12646 1.17441 0.85268 0.91411 0.88039 1.42397 1.07347 1.13757 1.75496 1.21492 0.99480 0.94653 1.13730 1.22070 0.87424 0.98164 0.91337 1.67057 1.37705 1.02657 1.20193 1.17652 0.83097 0.85856 0.93286 1.91621 1.60998 1.69697 1.86563 0.93222 0.92791 0.93176 0.91611 0.92471 0.93391 0.91265 0.88704 0.96201 0.95341 0.99695 0.92737 0.90975 0.94379 0.76343 0.77091 0.84691 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.11 -1.58 5.17 -26.74 -0.14 -1.72 16 4 C 0.06 1.05 4.83 -3.83 -0.02 1.03 16 5 N -0.52 -10.53 4.45 -237.53 -1.06 -11.58 16 6 C 0.16 4.06 3.01 -4.98 -0.01 4.05 16 7 C -0.51 -14.64 8.72 -34.44 -0.30 -14.94 16 8 H 0.08 2.48 7.67 -52.49 -0.40 2.08 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 11 Si 0.87 22.72 27.37 -169.99 -4.65 18.06 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.26 -6.82 6.69 56.52 0.38 -6.45 16 15 C 0.10 1.72 4.43 -4.98 -0.02 1.70 16 16 C -0.22 -3.78 4.93 -104.21 -0.51 -4.29 16 17 C 0.29 4.17 6.79 -83.62 -0.57 3.61 16 18 N -0.85 -9.09 8.99 32.52 0.29 -8.80 16 19 C -0.27 -3.36 9.99 -39.24 -0.39 -3.76 16 20 C 0.17 2.33 11.17 -17.61 -0.20 2.13 16 21 N -0.56 -10.21 10.37 -13.69 -0.14 -10.36 16 22 C 0.35 6.91 7.03 -17.41 -0.12 6.79 16 23 F -0.11 -2.35 15.03 2.25 0.03 -2.32 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.58 6.80 -51.93 -0.35 0.23 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 2.02 6.65 -51.93 -0.35 1.67 16 32 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.03 0.76 4.54 -51.93 -0.24 0.52 16 34 H -0.01 -0.38 7.27 -51.93 -0.38 -0.75 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.07 1.00 5.01 -51.93 -0.26 0.74 16 37 H 0.04 0.68 7.62 -51.93 -0.40 0.28 16 38 H 0.41 4.33 6.97 -40.82 -0.28 4.04 16 39 H 0.40 3.05 8.86 -40.82 -0.36 2.69 16 40 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -33.52 331.18 -7.91 -41.43 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.98 Total: 2.13 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.17 Total: -6.25 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.13 Total: -58.04 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.03 Total: -2.32 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.65 Total: 18.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.52 -7.91 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238157930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.662 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds