Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47216 * 2 1 4 4 O 1.42893 * 109.47039 * 240.00467 * 2 1 3 5 5 C 1.35962 * 117.00151 * 213.11589 * 4 2 1 6 6 C 1.38952 * 120.05975 * 266.06911 * 5 4 2 7 7 F 1.35109 * 120.04564 * 359.97438 * 6 5 4 8 8 C 1.38286 * 119.90700 * 179.97438 * 6 5 4 9 9 C 1.38299 * 120.02664 * 0.02664 * 8 6 5 10 10 C 1.38217 * 120.12903 * 359.97213 * 9 8 6 11 11 C 1.38230 * 120.09297 * 359.74603 * 10 9 8 12 12 C 1.50698 * 120.01570 * 180.25302 * 11 10 9 13 13 N 1.46901 * 109.47504 * 254.42438 * 12 11 10 14 14 C 1.46904 * 110.99921 * 66.04465 * 13 12 11 15 15 C 1.46894 * 111.00083 * 190.00152 * 13 12 11 16 16 C 1.50698 * 109.47181 * 169.99670 * 15 13 12 17 17 H 1.08004 * 119.99860 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00142 * 179.97438 * 16 15 13 19 19 N 1.31510 * 120.00167 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99961 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46953 * 60.00598 * 20 18 16 22 22 H 1.48502 * 109.46708 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47081 * 300.00325 * 20 18 16 24 24 H 1.08997 * 109.47551 * 59.99613 * 1 2 3 25 25 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47178 * 299.99998 * 1 2 3 27 27 H 1.09003 * 109.47201 * 120.00138 * 2 1 3 28 28 H 1.08998 * 109.47246 * 295.81256 * 3 2 1 29 29 H 1.08999 * 109.47048 * 55.80897 * 3 2 1 30 30 H 1.09000 * 109.47025 * 175.81265 * 3 2 1 31 31 H 1.07996 * 119.98888 * 179.97438 * 8 6 5 32 32 H 1.08008 * 119.93661 * 179.97438 * 9 8 6 33 33 H 1.07996 * 119.95261 * 180.02562 * 10 9 8 34 34 H 1.09008 * 109.47192 * 14.42580 * 12 11 10 35 35 H 1.09001 * 109.46651 * 134.42171 * 12 11 10 36 36 H 1.08993 * 109.46991 * 60.00211 * 14 13 12 37 37 H 1.08994 * 109.46607 * 180.02562 * 14 13 12 38 38 H 1.08998 * 109.47129 * 299.99959 * 14 13 12 39 39 H 1.09005 * 109.47069 * 290.00046 * 15 13 12 40 40 H 1.09003 * 109.47443 * 50.00027 * 15 13 12 41 41 H 0.97003 * 120.00697 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 3.1687 -1.3686 -1.0470 6 6 4.3766 -0.7670 -1.3782 7 9 4.3979 0.5096 -1.8202 8 6 5.5570 -1.4767 -1.2547 9 6 5.5348 -2.7836 -0.8027 10 6 4.3339 -3.3832 -0.4730 11 6 3.1515 -2.6767 -0.5889 12 6 1.8438 -3.3304 -0.2235 13 7 1.1029 -3.6619 -1.4479 14 6 1.8040 -4.6930 -2.2246 15 6 -0.2700 -4.0806 -1.1355 16 6 -1.0688 -4.1746 -2.4098 17 1 -0.6030 -3.9465 -3.3572 18 6 -2.3939 -4.5528 -2.3665 19 7 -2.9610 -4.8311 -1.2130 20 14 -3.3840 -4.6700 -3.9463 21 1 -2.7561 -5.6661 -4.8512 22 1 -4.7719 -5.0932 -3.6304 23 1 -3.4111 -3.3433 -4.6130 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.7393 1.9343 -0.9251 29 1 1.6167 1.9776 0.8500 30 1 3.1274 1.4434 0.0750 31 1 6.4966 -1.0106 -1.5121 32 1 6.4575 -3.3367 -0.7072 33 1 4.3199 -4.4038 -0.1199 34 1 2.0386 -4.2421 0.3414 35 1 1.2528 -2.6455 0.3847 36 1 1.9051 -5.5956 -1.6221 37 1 1.2342 -4.9191 -3.1258 38 1 2.7931 -4.3289 -2.5023 39 1 -0.2503 -5.0545 -0.6462 40 1 -0.7306 -3.3495 -0.4711 41 1 -3.8934 -5.0969 -1.1824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238327457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = -58.766667 kcal Electronic energy + Delta-G solvation = -22925.176292 eV Core-core repulsion = 19526.926374 eV Total energy + Delta-G solvation = -3398.249918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.72460 -39.92348 -37.56747 -36.29119 -32.96564 -32.63398 -31.04320 -29.41698 -27.19627 -27.11654 -26.48298 -23.98094 -22.64116 -21.72057 -21.00623 -20.16004 -17.88286 -16.94459 -16.60452 -16.17550 -15.82594 -15.04114 -14.89820 -14.57492 -14.32357 -14.07946 -13.89606 -13.76574 -13.36043 -12.91353 -12.52420 -12.48482 -12.09018 -11.92618 -11.82461 -11.82324 -11.64832 -11.30152 -11.09627 -10.98752 -10.85778 -10.65812 -10.53035 -10.42203 -9.84245 -9.62826 -9.21761 -8.66114 -8.44171 -8.39791 -7.18888 -6.00030 -4.00423 1.14984 1.21008 3.36241 3.39678 3.40783 3.44196 3.88631 4.32448 4.46110 4.76764 4.87007 5.05966 5.11786 5.21253 5.25515 5.31384 5.35155 5.37289 5.49430 5.73055 5.76377 5.90961 5.94108 6.04930 6.07995 6.10819 6.15476 6.21788 6.30866 6.33682 6.36634 6.54544 6.64418 6.79052 6.80022 7.29719 7.34125 7.80012 7.83685 8.10366 8.22388 8.57228 9.06945 9.63427 11.10802 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.005292 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.638347 B = 5289.413436 C = 6042.542690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.089 3.911 3 C -0.173 4.173 4 O -0.301 6.301 5 C 0.094 3.906 6 C 0.074 3.926 7 F -0.135 7.135 8 C -0.153 4.153 9 C -0.103 4.103 10 C -0.115 4.115 11 C -0.061 4.061 12 C 0.095 3.905 13 N -0.524 5.524 14 C 0.037 3.963 15 C 0.196 3.804 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.901 5.901 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.009 0.991 37 H 0.074 0.926 38 H 0.044 0.956 39 H -0.011 1.011 40 H 0.030 0.970 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.113 7.126 4.744 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 C -0.231 4.231 4 O -0.218 6.218 5 C 0.048 3.952 6 C 0.054 3.946 7 F -0.114 7.114 8 C -0.172 4.172 9 C -0.121 4.121 10 C -0.134 4.134 11 C -0.063 4.063 12 C -0.033 4.033 13 N -0.248 5.248 14 C -0.111 4.111 15 C 0.071 3.929 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.201 1.201 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.007 0.993 40 H 0.048 0.952 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.751 7.568 4.365 17.144 hybrid contribution -0.407 -0.605 -0.278 0.781 sum 14.344 6.963 4.087 16.460 Atomic orbital electron populations 1.21897 0.92447 1.04322 1.02146 1.22345 0.95670 0.91666 0.86967 1.22339 1.01277 0.96739 1.02701 1.86266 1.35474 1.65627 1.34400 1.18474 0.84860 0.91126 1.00746 1.18134 0.93961 0.79971 1.02525 1.91471 1.97287 1.35653 1.86992 1.20983 0.96681 0.95673 1.03840 1.20916 0.98257 0.94010 0.98897 1.21081 0.91437 1.00077 1.00822 1.20326 0.96274 0.92874 0.96783 1.20935 0.90785 0.97945 0.93634 1.62124 1.03718 1.42027 1.16908 1.22234 0.97673 0.92127 0.99096 1.19723 0.82123 0.93965 0.97070 1.21109 0.94973 1.44674 0.93371 0.91904 1.24957 0.97713 0.95589 0.96254 1.69942 1.12753 1.47019 1.24324 0.86581 0.78875 0.78554 0.83525 1.20336 1.21415 1.20148 0.91533 0.90468 0.91539 0.92390 0.91507 0.91598 0.92718 0.84879 0.85137 0.85309 0.94863 0.90440 0.97215 0.90688 0.93706 0.99296 0.95245 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.56 37.16 0.36 -1.91 16 2 C 0.09 1.32 2.63 -26.73 -0.07 1.25 16 3 C -0.17 -2.18 9.44 37.16 0.35 -1.83 16 4 O -0.30 -5.44 9.00 -19.62 -0.18 -5.62 16 5 C 0.09 1.56 5.54 -39.18 -0.22 1.34 16 6 C 0.07 1.10 7.31 -39.30 -0.29 0.82 16 7 F -0.14 -2.09 16.17 2.25 0.04 -2.06 16 8 C -0.15 -1.84 10.02 -39.54 -0.40 -2.23 16 9 C -0.10 -1.14 10.04 -39.57 -0.40 -1.53 16 10 C -0.12 -1.49 9.17 -39.59 -0.36 -1.85 16 11 C -0.06 -0.97 4.42 -104.49 -0.46 -1.44 16 12 C 0.10 1.72 4.69 -4.98 -0.02 1.70 16 13 N -0.52 -11.42 4.74 -245.83 -1.17 -12.59 16 14 C 0.04 0.75 9.16 60.07 0.55 1.30 16 15 C 0.20 5.07 4.72 -4.98 -0.02 5.05 16 16 C -0.50 -14.17 8.46 -34.44 -0.29 -14.46 16 17 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.08 1.37 7.83 -51.93 -0.41 0.97 16 26 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.06 0.81 7.59 -51.93 -0.39 0.42 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.69 7.31 -51.93 -0.38 0.31 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.45 8.00 -52.49 -0.42 1.03 16 34 H 0.03 0.57 7.93 -51.92 -0.41 0.16 16 35 H 0.08 1.41 6.48 -51.93 -0.34 1.07 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 38 H 0.04 0.80 6.91 -51.93 -0.36 0.44 16 39 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 40 H 0.03 0.80 7.92 -51.93 -0.41 0.39 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -30.73 341.76 -8.17 -38.91 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.36 Total: -2.43 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.37 Total: -12.33 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.43 Total: -38.46 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.18 Total: -5.62 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.73 -8.17 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238327457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.861 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds