Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47478 * 2 1 4 4 O 1.42899 * 109.47122 * 120.00306 * 2 1 3 5 5 C 1.35953 * 117.00447 * 84.81334 * 4 2 1 6 6 C 1.38663 * 120.06347 * 354.59162 * 5 4 2 7 7 C 1.38176 * 119.97278 * 180.27504 * 6 5 4 8 8 C 1.38262 * 120.09350 * 359.96881 * 7 6 5 9 9 C 1.38261 * 120.12819 * 0.04985 * 8 7 6 10 10 C 1.50697 * 119.98504 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47184 * 259.97662 * 10 9 8 12 12 C 1.46905 * 111.00102 * 66.04467 * 11 10 9 13 13 C 1.46896 * 111.00284 * 190.00029 * 11 10 9 14 14 C 1.50697 * 109.47467 * 169.99847 * 13 11 10 15 15 H 1.08004 * 120.00140 * 0.02562 * 14 13 11 16 16 C 1.37880 * 120.00197 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99747 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47375 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46972 * 120.00619 * 18 16 14 21 21 H 1.48509 * 109.46984 * 240.00216 * 18 16 14 22 22 C 1.38328 * 120.02434 * 359.95341 * 9 8 7 23 23 F 1.35105 * 120.04064 * 180.02562 * 22 9 8 24 24 H 1.08999 * 109.46901 * 59.99787 * 1 2 3 25 25 H 1.09001 * 109.47534 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46866 * 300.00519 * 1 2 3 27 27 H 1.08997 * 109.47005 * 239.99733 * 2 1 3 28 28 H 1.09000 * 109.47456 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47228 * 300.00013 * 3 2 1 30 30 H 1.08997 * 109.47221 * 59.99865 * 3 2 1 31 31 H 1.08007 * 120.00847 * 0.24532 * 6 5 4 32 32 H 1.08000 * 119.95151 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.93463 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47175 * 19.97964 * 10 9 8 35 35 H 1.09000 * 109.47175 * 139.98026 * 10 9 8 36 36 H 1.09006 * 109.46775 * 59.99922 * 12 11 10 37 37 H 1.08996 * 109.47161 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.47480 * 300.00577 * 12 11 10 39 39 H 1.09005 * 109.47094 * 290.00342 * 13 11 10 40 40 H 1.08998 * 109.47030 * 49.99924 * 13 11 10 41 41 H 0.96998 * 119.99821 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1088 -2.0277 1.0991 6 6 1.6540 -2.7036 -0.0229 7 6 1.7539 -4.0802 -0.0872 8 6 2.3075 -4.7851 0.9655 9 6 2.7620 -4.1152 2.0864 10 6 3.3644 -4.8867 3.2323 11 7 2.3625 -5.0480 4.2943 12 6 1.2520 -5.8987 3.8457 13 6 2.9740 -5.5828 5.5182 14 6 1.9827 -5.5050 6.6506 15 1 0.9967 -5.0992 6.4782 16 6 2.3341 -5.9527 7.9064 17 7 3.5345 -6.4472 8.1162 18 14 1.1050 -5.8569 9.3098 19 1 -0.1647 -5.2656 8.8164 20 1 0.8443 -7.2218 9.8336 21 1 1.6582 -5.0075 10.3952 22 6 2.6644 -2.7372 2.1562 23 9 3.1089 -2.0822 3.2511 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9562 0.8899 31 1 1.2213 -2.1542 -0.8460 32 1 1.3991 -4.6064 -0.9611 33 1 2.3848 -5.8610 0.9124 34 1 3.6834 -5.8683 2.8815 35 1 4.2245 -4.3435 3.6237 36 1 1.6348 -6.8825 3.5739 37 1 0.5250 -6.0019 4.6512 38 1 0.7726 -5.4434 2.9792 39 1 3.2607 -6.6220 5.3570 40 1 3.8583 -4.9967 5.7685 41 1 3.7818 -6.7619 8.9998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238422436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -58.323248 kcal Electronic energy + Delta-G solvation = -22145.061038 eV Core-core repulsion = 18746.830348 eV Total energy + Delta-G solvation = -3398.230690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.30972 -40.19770 -38.16953 -36.13592 -33.41098 -32.63478 -31.05439 -29.53640 -27.63610 -27.12268 -26.61769 -24.07722 -22.83597 -22.23389 -20.77209 -19.97904 -18.15934 -16.94060 -16.60779 -16.29124 -15.86307 -15.04100 -14.90251 -14.74373 -14.44348 -14.21701 -14.04643 -13.80133 -13.43342 -12.97161 -12.78127 -12.64767 -12.49263 -12.18200 -11.93104 -11.89161 -11.78024 -11.31537 -11.20714 -11.08596 -10.85283 -10.83776 -10.80472 -10.56569 -10.39724 -9.82785 -9.18933 -8.60386 -8.39503 -8.06619 -7.22400 -5.98982 -3.99696 1.24942 1.37011 3.00794 3.34307 3.41461 3.47050 3.65311 4.42647 4.47069 4.49554 4.62756 4.76244 4.85576 4.89559 5.15140 5.20950 5.25176 5.29059 5.33975 5.38467 5.46569 5.49587 5.57204 5.83236 5.84620 5.91396 6.09061 6.12467 6.20011 6.26623 6.33486 6.38280 6.53917 6.75704 6.80620 7.31283 7.35171 7.38435 7.83300 8.10965 8.22072 8.56772 9.07900 9.64132 11.12102 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.003910 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.492735 B = 7158.692051 C = 7669.465877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.303 6.303 5 C 0.093 3.907 6 C -0.194 4.194 7 C -0.096 4.096 8 C -0.126 4.126 9 C -0.062 4.062 10 C 0.090 3.910 11 N -0.533 5.533 12 C 0.036 3.964 13 C 0.193 3.807 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.094 3.906 23 F -0.121 7.121 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.046 0.954 39 H -0.008 1.008 40 H 0.031 0.969 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 9.504 -20.844 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.217 6.217 5 C 0.047 3.953 6 C -0.212 4.212 7 C -0.114 4.114 8 C -0.144 4.144 9 C -0.063 4.063 10 C -0.038 4.038 11 N -0.257 5.257 12 C -0.112 4.112 13 C 0.068 3.932 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 C 0.073 3.927 23 F -0.100 7.100 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.030 0.970 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.010 0.990 40 H 0.049 0.951 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.690 10.054 -20.363 23.007 hybrid contribution -0.306 -0.752 0.625 1.025 sum -3.996 9.301 -19.738 22.183 Atomic orbital electron populations 1.22399 0.95041 1.03287 1.03148 1.22441 0.94408 0.93718 0.87385 1.21849 1.02203 0.93496 1.03039 1.86204 1.81329 1.15605 1.38605 1.18955 0.98560 0.83240 0.94583 1.21052 1.06629 0.95476 0.98089 1.20874 0.98736 0.93164 0.98631 1.20885 1.00434 1.00149 0.92977 1.19949 0.98618 0.91117 0.96650 1.20981 0.95396 0.97297 0.90116 1.62150 1.09060 1.50651 1.03829 1.22254 0.95431 0.93538 0.99999 1.19764 0.95314 0.93026 0.85084 1.21192 0.99814 1.39987 0.93282 0.91781 1.24985 0.95462 0.95437 0.98778 1.69971 1.19071 1.42392 1.22490 0.86439 0.81393 0.77502 0.82084 1.19652 1.21157 1.20989 1.16788 1.02731 0.89341 0.83803 1.91534 1.86694 1.80702 1.51036 0.91101 0.91668 0.91241 0.90931 0.91595 0.90584 0.91307 0.84915 0.85505 0.85286 0.94230 0.90007 0.97039 0.90666 0.93552 0.98999 0.95062 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.17 37.16 0.34 -1.19 16 2 C 0.08 0.74 2.85 -26.74 -0.08 0.66 16 3 C -0.15 -1.17 9.56 37.15 0.36 -0.81 16 4 O -0.30 -4.33 9.67 -19.59 -0.19 -4.52 16 5 C 0.09 1.38 6.60 -39.18 -0.26 1.12 16 6 C -0.19 -2.28 8.24 -39.45 -0.32 -2.61 16 7 C -0.10 -1.09 10.04 -39.60 -0.40 -1.48 16 8 C -0.13 -1.69 8.73 -39.56 -0.35 -2.03 16 9 C -0.06 -1.03 4.58 -104.58 -0.48 -1.51 16 10 C 0.09 1.72 4.82 -4.98 -0.02 1.69 16 11 N -0.53 -12.08 4.74 -245.83 -1.17 -13.25 16 12 C 0.04 0.74 9.09 60.07 0.55 1.28 16 13 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 14 C -0.50 -14.57 8.46 -34.44 -0.29 -14.86 16 15 H 0.06 1.85 7.12 -52.48 -0.37 1.47 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 18 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 C 0.09 1.65 7.25 -39.30 -0.29 1.37 16 23 F -0.12 -2.47 16.51 2.25 0.04 -2.43 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.59 6.90 -51.93 -0.36 0.23 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.60 6.32 -51.93 -0.33 0.27 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.13 1.19 5.43 -52.48 -0.28 0.91 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.53 8.03 -52.49 -0.42 1.11 16 34 H 0.04 0.70 7.98 -51.93 -0.41 0.29 16 35 H 0.08 1.61 7.73 -51.93 -0.40 1.21 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 38 H 0.05 0.83 6.65 -51.93 -0.35 0.48 16 39 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 40 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -32.31 338.82 -8.06 -40.37 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -6.21 Total: -4.19 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.36 Total: -11.74 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.43 Total: -39.71 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.19 Total: -4.52 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.31 -8.06 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238422436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.953 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds