Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 O 1.42907 * 109.46918 * 119.99652 * 2 1 3 5 5 C 1.35903 * 116.99739 * 155.32100 * 4 2 1 6 6 C 1.38767 * 120.04127 * 185.36089 * 5 4 2 7 7 C 1.38126 * 119.99637 * 179.97438 * 6 5 4 8 8 C 1.38254 * 120.08133 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.95869 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47221 * 105.00319 * 9 8 7 11 11 C 1.46897 * 111.00080 * 293.95239 * 10 9 8 12 12 C 1.46900 * 111.00461 * 169.99785 * 10 9 8 13 13 C 1.50695 * 109.47557 * 190.00066 * 12 10 9 14 14 H 1.08007 * 119.99884 * 0.02562 * 13 12 10 15 15 C 1.37882 * 120.00184 * 180.02562 * 13 12 10 16 16 N 1.31504 * 119.99751 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00067 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47338 * 119.99679 * 17 15 13 20 20 H 1.48494 * 109.47400 * 240.00129 * 17 15 13 21 21 C 1.38477 * 120.08255 * 359.97438 * 8 7 6 22 22 F 1.35098 * 120.00074 * 180.02562 * 21 8 7 23 23 C 1.38389 * 120.00560 * 359.78698 * 21 8 7 24 24 H 1.09003 * 109.47091 * 59.99976 * 1 2 3 25 25 H 1.09007 * 109.47069 * 300.00510 * 1 2 3 26 26 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46901 * 239.99605 * 2 1 3 28 28 H 1.09004 * 109.46727 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.46998 * 299.99452 * 3 2 1 30 30 H 1.08997 * 109.47579 * 60.00021 * 3 2 1 31 31 H 1.08003 * 120.00039 * 359.97438 * 6 5 4 32 32 H 1.08003 * 119.96271 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47096 * 225.00060 * 9 8 7 34 34 H 1.08994 * 109.47313 * 344.99796 * 9 8 7 35 35 H 1.09002 * 109.47103 * 60.00349 * 11 10 9 36 36 H 1.09003 * 109.47510 * 180.02562 * 11 10 9 37 37 H 1.08995 * 109.47417 * 299.99841 * 11 10 9 38 38 H 1.09004 * 109.47175 * 310.00185 * 12 10 9 39 39 H 1.09003 * 109.47128 * 69.99728 * 12 10 9 40 40 H 0.97004 * 120.00451 * 179.97438 * 16 15 13 41 41 H 1.07995 * 120.04309 * 180.24688 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2493 -1.2189 1.1002 6 6 3.7306 -1.9820 2.1546 7 6 4.9939 -2.5363 2.0857 8 6 5.7800 -2.3323 0.9668 9 6 7.1576 -2.9387 0.8943 10 7 7.1378 -4.0916 -0.0158 11 6 6.3070 -5.1754 0.5255 12 6 8.5002 -4.5634 -0.2978 13 6 8.4605 -5.5759 -1.4132 14 1 7.5175 -5.8421 -1.8675 15 6 9.6279 -6.1626 -1.8537 16 7 10.7761 -5.8380 -1.3008 17 14 9.5786 -7.4182 -3.2358 18 1 8.1753 -7.6061 -3.6840 19 1 10.4006 -6.9343 -4.3739 20 1 10.1205 -8.7121 -2.7487 21 6 5.3027 -1.5722 -0.0877 22 9 6.0720 -1.3744 -1.1805 23 6 4.0356 -1.0194 -0.0245 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1174 -2.1425 3.0291 32 1 5.3678 -3.1304 2.9064 33 1 7.8629 -2.1951 0.5232 34 1 7.4636 -3.2655 1.8881 35 1 5.2859 -4.8183 0.6593 36 1 6.3101 -6.0166 -0.1678 37 1 6.7088 -5.4959 1.4866 38 1 9.1226 -3.7194 -0.5952 39 1 8.9174 -5.0249 0.5972 40 1 11.5975 -6.2510 -1.6103 41 1 3.6611 -0.4299 -0.8482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238443559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = -60.762475 kcal Electronic energy + Delta-G solvation = -21948.094751 eV Core-core repulsion = 18549.758289 eV Total energy + Delta-G solvation = -3398.336462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.50306 -40.32563 -38.09481 -36.09522 -33.46179 -32.54677 -30.78312 -30.23383 -27.63215 -27.07844 -26.34627 -23.89350 -23.33390 -21.75221 -20.97283 -20.10872 -18.56054 -16.77570 -16.40562 -16.04231 -15.65979 -15.36160 -15.16332 -14.69178 -14.54803 -14.19608 -14.05111 -13.82959 -13.46239 -13.32566 -12.87189 -12.75753 -12.56569 -12.27238 -11.91584 -11.82275 -11.73526 -11.29703 -11.15057 -11.10970 -10.96988 -10.86462 -10.65735 -10.55020 -10.41164 -9.83125 -9.18679 -8.80734 -8.41684 -8.03493 -7.21461 -6.00097 -4.00856 1.25546 1.37025 2.98761 3.33008 3.40191 3.45569 3.65596 4.39828 4.45815 4.51035 4.59698 4.72230 4.82964 4.99351 5.02769 5.14555 5.21129 5.25022 5.35819 5.39955 5.41825 5.47529 5.66875 5.75111 5.79957 5.86738 6.09920 6.11883 6.19114 6.26689 6.29402 6.36974 6.56453 6.77421 6.81575 7.31047 7.32433 7.35728 7.82753 8.10760 8.22500 8.56913 9.06889 9.63023 11.10939 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029029 B = 0.003498 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.321636 B = 8003.792260 C = 8248.190061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.181 4.181 4 O -0.308 6.308 5 C 0.151 3.849 6 C -0.168 4.168 7 C -0.049 4.049 8 C -0.137 4.137 9 C 0.095 3.905 10 N -0.534 5.534 11 C 0.038 3.962 12 C 0.193 3.807 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.165 3.835 22 F -0.123 7.123 23 C -0.254 4.254 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.011 0.989 38 H 0.030 0.970 39 H -0.008 1.008 40 H 0.260 0.740 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 12.396 5.939 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.238 4.238 4 O -0.223 6.223 5 C 0.105 3.895 6 C -0.186 4.186 7 C -0.068 4.068 8 C -0.138 4.138 9 C -0.033 4.033 10 N -0.259 5.259 11 C -0.111 4.111 12 C 0.068 3.932 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.145 3.855 22 F -0.101 7.101 23 C -0.273 4.273 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.009 0.991 40 H 0.070 0.930 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.306 12.516 5.582 22.868 hybrid contribution 0.712 -0.824 -0.433 1.172 sum -17.594 11.693 5.148 21.744 Atomic orbital electron populations 1.21848 0.92411 1.03236 1.02982 1.22465 0.95416 0.92716 0.87621 1.22393 1.02452 0.95912 1.03091 1.86120 1.28952 1.68371 1.38814 1.18597 0.84215 0.93030 0.93635 1.20365 0.97170 1.02023 0.99078 1.20762 0.92257 0.96826 0.96971 1.20005 0.99094 1.00631 0.94090 1.20893 0.91430 0.95025 0.95928 1.62146 1.16282 1.05916 1.41526 1.22221 0.95895 0.95308 0.97662 1.19750 0.82376 0.95475 0.95599 1.21195 0.93447 1.22040 1.17584 0.91814 1.24987 0.95388 0.97231 0.97079 1.69965 0.97967 1.43638 1.42355 0.86443 0.78123 0.80940 0.81935 1.19664 1.21014 1.21144 1.17181 0.88469 0.96170 0.83673 1.91550 1.74353 1.92872 1.51353 1.21146 0.95503 1.09759 1.00918 0.90518 0.91503 0.91564 0.90650 0.91630 0.90979 0.91426 0.84989 0.84721 0.90359 0.94596 0.93657 0.90756 0.97084 0.95160 0.99055 0.93013 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.56 37.16 0.36 -0.65 16 2 C 0.07 0.66 2.85 -26.73 -0.08 0.59 16 3 C -0.18 -1.42 9.17 37.16 0.34 -1.08 16 4 O -0.31 -3.60 9.80 -19.43 -0.19 -3.79 16 5 C 0.15 1.95 6.60 -39.23 -0.26 1.69 16 6 C -0.17 -2.09 9.99 -39.43 -0.39 -2.48 16 7 C -0.05 -0.66 9.11 -39.62 -0.36 -1.03 16 8 C -0.14 -2.21 4.43 -104.53 -0.46 -2.68 16 9 C 0.10 1.79 4.77 -4.98 -0.02 1.76 16 10 N -0.53 -11.97 4.74 -245.84 -1.17 -13.13 16 11 C 0.04 0.76 9.15 60.06 0.55 1.31 16 12 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 13 C -0.50 -14.46 8.46 -34.44 -0.29 -14.75 16 14 H 0.06 1.82 7.13 -52.48 -0.37 1.45 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.08 13.28 55.43 0.74 -26.35 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.17 2.71 7.24 -39.44 -0.29 2.43 16 22 F -0.12 -2.30 16.75 2.25 0.04 -2.26 16 23 C -0.25 -3.49 8.21 -39.37 -0.32 -3.81 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.69 6.31 -51.93 -0.33 0.36 16 28 H 0.06 0.58 6.91 -51.93 -0.36 0.23 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.13 1.55 8.00 -52.48 -0.42 1.13 16 33 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 34 H 0.04 0.63 7.93 -51.93 -0.41 0.22 16 35 H 0.04 0.81 6.88 -51.93 -0.36 0.45 16 36 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.14 1.64 5.43 -52.49 -0.29 1.35 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.39 339.64 -8.06 -39.45 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.22 Total: -3.89 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.35 Total: -12.12 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.43 Total: -39.48 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.19 Total: -3.79 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.39 -8.06 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238443559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.311 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds