Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47475 * 2 1 4 4 O 1.42895 * 109.47280 * 120.00767 * 2 1 3 5 5 C 1.35958 * 117.00072 * 154.98558 * 4 2 1 6 6 C 1.38662 * 120.06414 * 5.48967 * 5 4 2 7 7 C 1.38180 * 119.97113 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.95202 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.46697 * 89.99910 * 8 7 6 10 10 C 1.46894 * 111.00351 * 66.04956 * 9 8 7 11 11 C 1.46907 * 110.99680 * 190.00171 * 9 8 7 12 12 C 1.50700 * 109.47110 * 170.00099 * 11 9 8 13 13 H 1.07998 * 119.99871 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99810 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99902 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99715 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46804 * 60.00348 * 16 14 12 18 18 H 1.48496 * 109.46734 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47061 * 300.00097 * 16 14 12 20 20 C 1.38262 * 120.09547 * 359.97438 * 7 6 5 21 21 C 1.38255 * 120.12577 * 0.02562 * 20 7 6 22 22 C 1.38338 * 120.03008 * 359.97438 * 21 20 7 23 23 F 1.35095 * 120.04775 * 180.27625 * 22 21 20 24 24 H 1.09001 * 109.46783 * 299.99269 * 1 2 3 25 25 H 1.08996 * 109.47631 * 59.99325 * 1 2 3 26 26 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46466 * 240.00372 * 2 1 3 28 28 H 1.08998 * 109.46718 * 60.00085 * 3 2 1 29 29 H 1.09000 * 109.47408 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47197 * 300.00947 * 3 2 1 31 31 H 1.08005 * 120.01197 * 359.97438 * 6 5 4 32 32 H 1.09001 * 109.47132 * 209.99705 * 8 7 6 33 33 H 1.08996 * 109.47551 * 330.00222 * 8 7 6 34 34 H 1.09004 * 109.47317 * 59.99329 * 10 9 8 35 35 H 1.09000 * 109.47531 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46519 * 299.99676 * 10 9 8 37 37 H 1.09007 * 109.46901 * 289.99772 * 11 9 8 38 38 H 1.08995 * 109.47100 * 49.99724 * 11 9 8 39 39 H 0.97011 * 119.99817 * 179.97438 * 15 14 12 40 40 H 1.08000 * 119.93888 * 180.02562 * 20 7 6 41 41 H 1.08001 * 119.98746 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 3.2471 -1.2254 1.0975 6 6 4.0353 -1.0238 -0.0253 7 6 5.2958 -1.5857 -0.0938 8 6 6.1524 -1.3659 -1.3140 9 7 6.9686 -0.1587 -1.1283 10 6 7.9439 -0.3440 -0.0456 11 6 7.6372 0.2223 -2.3796 12 6 8.2605 1.5852 -2.2213 13 1 8.1687 2.1155 -1.2850 14 6 8.9480 2.1551 -3.2719 15 7 9.0592 1.5096 -4.4122 16 14 9.7199 3.8448 -3.0758 17 1 10.7142 3.8098 -1.9734 18 1 10.3959 4.2299 -4.3407 19 1 8.6629 4.8381 -2.7578 20 6 5.7728 -2.3485 0.9561 21 6 4.9902 -2.5521 2.0776 22 6 3.7275 -1.9919 2.1516 23 9 2.9647 -2.1860 3.2496 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6768 1.9562 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.6638 -0.4285 -0.8464 32 1 6.8049 -2.2268 -1.4598 33 1 5.5138 -1.2417 -2.1886 34 1 8.6029 -1.1775 -0.2889 35 1 8.5351 0.5643 0.0704 36 1 7.4175 -0.5566 0.8850 37 1 8.4129 -0.5069 -2.6138 38 1 6.9070 0.2484 -3.1884 39 1 9.5426 1.9107 -5.1515 40 1 6.7585 -2.7862 0.9001 41 1 5.3652 -3.1480 2.8965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238465738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -61.297466 kcal Electronic energy + Delta-G solvation = -22086.237875 eV Core-core repulsion = 18687.878214 eV Total energy + Delta-G solvation = -3398.359661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.66142 -40.23548 -38.19458 -36.13526 -33.34579 -32.62757 -31.02133 -29.83289 -27.39365 -27.16161 -26.54319 -24.06769 -23.35119 -21.51813 -20.97552 -20.27177 -18.10539 -17.04438 -16.63795 -16.33711 -15.89322 -15.05209 -14.99397 -14.61569 -14.53920 -14.30269 -14.18518 -13.94245 -13.31532 -13.02166 -12.96808 -12.68480 -12.43933 -12.18184 -11.96851 -11.80592 -11.56125 -11.41610 -11.22028 -11.04989 -10.88474 -10.86154 -10.71077 -10.64239 -10.43731 -9.89861 -9.28765 -8.71967 -8.47091 -8.06285 -7.30687 -6.06274 -4.07738 1.22367 1.35542 3.04244 3.31448 3.35541 3.38528 3.63633 4.32602 4.40424 4.62576 4.73932 4.80830 4.92265 4.95207 5.09898 5.23476 5.28358 5.32097 5.39702 5.47086 5.59059 5.67314 5.69165 5.79476 5.92840 5.97346 6.08595 6.15162 6.15831 6.19097 6.27603 6.31541 6.67833 6.72187 6.77626 7.21895 7.28052 7.36942 7.74899 8.01912 8.13512 8.48550 8.99554 9.56611 11.04505 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.004212 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.352019 B = 6646.197732 C = 7554.882094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.183 4.183 4 O -0.307 6.307 5 C 0.099 3.901 6 C -0.163 4.163 7 C -0.029 4.029 8 C 0.087 3.913 9 N -0.534 5.534 10 C 0.033 3.967 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.125 4.125 21 C -0.117 4.117 22 C 0.053 3.947 23 F -0.140 7.140 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.049 0.951 37 H -0.008 1.008 38 H 0.030 0.970 39 H 0.262 0.738 40 H 0.131 0.869 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 -6.807 9.162 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 C -0.240 4.240 4 O -0.221 6.221 5 C 0.053 3.947 6 C -0.182 4.182 7 C -0.030 4.030 8 C -0.041 4.041 9 N -0.258 5.258 10 C -0.115 4.115 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.144 4.144 21 C -0.136 4.136 22 C 0.033 3.967 23 F -0.118 7.118 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.148 0.852 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.406 -6.391 9.282 17.513 hybrid contribution 1.010 0.331 -0.248 1.091 sum -12.396 -6.060 9.034 16.492 Atomic orbital electron populations 1.21846 0.92510 1.02993 1.03062 1.22496 0.95253 0.93028 0.87224 1.22404 1.03146 0.95434 1.03033 1.86142 1.28603 1.68269 1.39111 1.18929 0.86146 0.95237 0.94415 1.21093 0.95198 1.03841 0.98107 1.19857 0.93380 0.93698 0.96075 1.21082 0.95662 0.93407 0.93966 1.62165 1.24744 1.29386 1.09493 1.22305 0.94428 1.00775 0.94014 1.19760 0.92638 0.95732 0.85055 1.21108 1.32756 1.01781 0.99020 0.91884 1.24976 0.96429 0.97944 0.95166 1.69945 1.42519 1.38254 1.03135 0.86560 0.79422 0.84196 0.77237 1.20252 1.21338 1.20164 1.20866 1.00013 1.00588 0.92931 1.20907 0.92003 1.00913 0.99806 1.16928 0.91447 1.03933 0.84349 1.91457 1.75208 1.93976 1.51189 0.91527 0.90394 0.91794 0.90610 0.91608 0.90943 0.90813 0.84162 0.94501 0.90334 0.97016 0.90685 0.93212 0.99005 0.95195 0.92841 0.85158 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.56 37.16 0.36 -0.92 16 2 C 0.08 0.85 2.84 -26.73 -0.08 0.77 16 3 C -0.18 -2.03 9.17 37.16 0.34 -1.69 16 4 O -0.31 -4.34 9.67 -19.61 -0.19 -4.53 16 5 C 0.10 1.45 6.61 -39.18 -0.26 1.20 16 6 C -0.16 -2.38 7.90 -39.45 -0.31 -2.70 16 7 C -0.03 -0.44 4.88 -104.64 -0.51 -0.95 16 8 C 0.09 1.49 5.12 -4.97 -0.03 1.46 16 9 N -0.53 -11.13 4.74 -245.82 -1.17 -12.30 16 10 C 0.03 0.64 8.95 60.06 0.54 1.17 16 11 C 0.19 4.88 4.72 -4.97 -0.02 4.86 16 12 C -0.51 -14.00 8.46 -34.44 -0.29 -14.29 16 13 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 C -0.13 -1.68 7.96 -39.57 -0.31 -2.00 16 21 C -0.12 -1.50 10.02 -39.54 -0.40 -1.90 16 22 C 0.05 0.78 7.31 -39.30 -0.29 0.49 16 23 F -0.14 -2.11 17.11 2.25 0.04 -2.07 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.81 6.31 -51.93 -0.33 0.48 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.95 6.92 -51.93 -0.36 0.59 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.14 1.95 5.43 -52.48 -0.28 1.66 16 32 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 36 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 37 H -0.01 -0.21 8.12 -51.92 -0.42 -0.63 16 38 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 1.57 8.03 -52.49 -0.42 1.15 16 41 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -30.05 338.57 -8.05 -38.10 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.19 Total: -2.10 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.36 Total: -13.03 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.43 Total: -37.82 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.05 -8.05 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238465738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.197 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds