Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47475 * 2 1 4 4 O 1.42895 * 109.47280 * 120.00767 * 2 1 3 5 5 C 1.35958 * 117.00072 * 154.98558 * 4 2 1 6 6 C 1.38662 * 120.06414 * 5.48967 * 5 4 2 7 7 C 1.38180 * 119.97113 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.95202 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.46697 * 89.99910 * 8 7 6 10 10 C 1.46894 * 111.00351 * 66.04956 * 9 8 7 11 11 C 1.46907 * 110.99680 * 190.00171 * 9 8 7 12 12 C 1.50700 * 109.47110 * 170.00099 * 11 9 8 13 13 H 1.07998 * 119.99871 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99810 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99902 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99715 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46804 * 60.00348 * 16 14 12 18 18 H 1.48496 * 109.46734 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47061 * 300.00097 * 16 14 12 20 20 C 1.38262 * 120.09547 * 359.97438 * 7 6 5 21 21 C 1.38255 * 120.12577 * 0.02562 * 20 7 6 22 22 C 1.38338 * 120.03008 * 359.97438 * 21 20 7 23 23 F 1.35095 * 120.04775 * 180.27625 * 22 21 20 24 24 H 1.09001 * 109.46783 * 299.99269 * 1 2 3 25 25 H 1.08996 * 109.47631 * 59.99325 * 1 2 3 26 26 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46466 * 240.00372 * 2 1 3 28 28 H 1.08998 * 109.46718 * 60.00085 * 3 2 1 29 29 H 1.09000 * 109.47408 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47197 * 300.00947 * 3 2 1 31 31 H 1.08005 * 120.01197 * 359.97438 * 6 5 4 32 32 H 1.09001 * 109.47132 * 209.99705 * 8 7 6 33 33 H 1.08996 * 109.47551 * 330.00222 * 8 7 6 34 34 H 1.09004 * 109.47317 * 59.99329 * 10 9 8 35 35 H 1.09000 * 109.47531 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46519 * 299.99676 * 10 9 8 37 37 H 1.09007 * 109.46901 * 289.99772 * 11 9 8 38 38 H 1.08995 * 109.47100 * 49.99724 * 11 9 8 39 39 H 0.97011 * 119.99817 * 179.97438 * 15 14 12 40 40 H 1.08000 * 119.93888 * 180.02562 * 20 7 6 41 41 H 1.08001 * 119.98746 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 3.2471 -1.2254 1.0975 6 6 4.0353 -1.0238 -0.0253 7 6 5.2958 -1.5857 -0.0938 8 6 6.1524 -1.3659 -1.3140 9 7 6.9686 -0.1587 -1.1283 10 6 7.9439 -0.3440 -0.0456 11 6 7.6372 0.2223 -2.3796 12 6 8.2605 1.5852 -2.2213 13 1 8.1687 2.1155 -1.2850 14 6 8.9480 2.1551 -3.2719 15 7 9.0592 1.5096 -4.4122 16 14 9.7199 3.8448 -3.0758 17 1 10.7142 3.8098 -1.9734 18 1 10.3959 4.2299 -4.3407 19 1 8.6629 4.8381 -2.7578 20 6 5.7728 -2.3485 0.9561 21 6 4.9902 -2.5521 2.0776 22 6 3.7275 -1.9919 2.1516 23 9 2.9647 -2.1860 3.2496 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6768 1.9562 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.6638 -0.4285 -0.8464 32 1 6.8049 -2.2268 -1.4598 33 1 5.5138 -1.2417 -2.1886 34 1 8.6029 -1.1775 -0.2889 35 1 8.5351 0.5643 0.0704 36 1 7.4175 -0.5566 0.8850 37 1 8.4129 -0.5069 -2.6138 38 1 6.9070 0.2484 -3.1884 39 1 9.5426 1.9107 -5.1515 40 1 6.7585 -2.7862 0.9001 41 1 5.3652 -3.1480 2.8965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238465738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -78.600768 kcal Electronic energy + Delta-G solvation = -22086.988203 eV Core-core repulsion = 18687.878214 eV Total energy + Delta-G solvation = -3399.109989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.80194 -41.30721 -39.38737 -37.64588 -34.77457 -34.14524 -32.29689 -30.99954 -29.06621 -28.22221 -27.94639 -25.67724 -24.52609 -22.95792 -21.90870 -21.81180 -19.22522 -18.50123 -18.01406 -17.76493 -17.01573 -16.77528 -16.08744 -16.01773 -15.78937 -15.72034 -15.39503 -15.35176 -14.56447 -14.26198 -14.11703 -13.84046 -13.58417 -13.43050 -13.21329 -13.08807 -12.94714 -12.79272 -12.69022 -12.53489 -12.46713 -12.22340 -12.13222 -11.85706 -11.77039 -11.61853 -11.28893 -10.60232 -9.83881 -9.21706 -8.96986 -8.19384 -6.29032 0.09045 0.27326 1.42363 1.44662 1.52662 2.08140 2.39824 2.51885 3.13485 3.22582 3.47739 3.64785 3.78297 3.83919 3.97074 4.07215 4.13905 4.24357 4.42840 4.47770 4.53194 4.67735 4.71588 4.75903 4.79177 4.84698 4.88743 4.98386 5.01443 5.09954 5.16619 5.20480 5.21973 5.26208 5.32019 5.55732 5.64998 5.70632 6.05271 6.30567 6.33470 6.60916 6.86546 7.40527 8.91141 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.004212 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.352019 B = 6646.197732 C = 7554.882094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 C -0.179 4.179 4 O -0.320 6.320 5 C 0.092 3.908 6 C -0.167 4.167 7 C -0.040 4.040 8 C 0.090 3.910 9 N -0.542 5.542 10 C 0.038 3.962 11 C 0.208 3.792 12 C -0.524 4.524 13 H 0.061 0.939 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.122 4.122 21 C -0.105 4.105 22 C 0.039 3.961 23 F -0.145 7.145 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.076 0.924 37 H -0.033 1.033 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.149 0.851 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 -6.702 10.304 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 C -0.237 4.237 4 O -0.235 6.235 5 C 0.046 3.954 6 C -0.186 4.186 7 C -0.041 4.041 8 C -0.037 4.037 9 N -0.266 5.266 10 C -0.110 4.110 11 C 0.082 3.918 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.193 4.193 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.195 1.195 20 C -0.141 4.141 21 C -0.123 4.123 22 C 0.019 3.981 23 F -0.123 7.123 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.158 0.842 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.094 0.906 37 H -0.016 1.016 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.166 0.834 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.733 -6.295 10.443 18.365 hybrid contribution 1.037 0.249 -0.580 1.214 sum -12.696 -6.046 9.863 17.176 Atomic orbital electron populations 1.21866 0.90463 1.03484 1.04140 1.22755 0.96813 0.92647 0.86482 1.22377 1.01516 0.95810 1.03965 1.86138 1.28337 1.68448 1.40589 1.19043 0.86486 0.95423 0.94483 1.21090 0.95241 1.03946 0.98315 1.19707 0.93359 0.95165 0.95885 1.21052 0.95403 0.92059 0.95205 1.62045 1.24797 1.31977 1.07827 1.22270 0.94304 1.00013 0.94406 1.19404 0.91341 0.94524 0.86540 1.21422 1.32999 1.02763 0.99014 0.92080 1.25843 0.96855 1.01868 0.94757 1.70066 1.43321 1.40047 1.03926 0.85496 0.78662 0.79360 0.77468 1.19319 1.20838 1.19495 1.21043 1.00791 0.99907 0.92354 1.21182 0.90908 1.00037 1.00204 1.17242 0.92180 1.04414 0.84239 1.91443 1.75475 1.94041 1.51378 0.91485 0.88254 0.91604 0.90405 0.91482 0.93346 0.89079 0.84171 0.93672 0.90744 0.96385 0.92692 0.90565 1.01570 0.97487 0.92682 0.83351 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.56 71.98 0.69 -1.57 16 2 C 0.07 1.47 2.84 30.59 0.09 1.56 16 3 C -0.18 -3.89 9.17 71.98 0.66 -3.23 16 4 O -0.32 -8.86 9.67 -93.08 -0.90 -9.76 16 5 C 0.09 2.63 6.61 22.53 0.15 2.78 16 6 C -0.17 -4.79 7.90 22.36 0.18 -4.61 16 7 C -0.04 -1.17 4.88 -19.87 -0.10 -1.27 16 8 C 0.09 3.07 5.12 85.56 0.44 3.51 16 9 N -0.54 -22.68 4.74 -931.62 -4.42 -27.10 16 10 C 0.04 1.43 8.95 127.69 1.14 2.57 16 11 C 0.21 10.79 4.72 85.56 0.40 11.19 16 12 C -0.52 -29.20 8.46 25.60 0.22 -28.99 16 13 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 14 C 0.00 0.28 5.46 84.66 0.46 0.74 16 15 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 16 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.12 -2.99 7.96 22.28 0.18 -2.81 16 21 C -0.10 -2.40 10.02 22.30 0.22 -2.18 16 22 C 0.04 1.08 7.31 22.45 0.16 1.24 16 23 F -0.14 -4.17 17.11 44.97 0.77 -3.40 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.63 6.31 -2.38 -0.02 1.61 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.27 6.92 -2.39 -0.02 1.26 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.14 3.93 5.43 -2.91 -0.02 3.91 16 32 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 33 H 0.07 2.55 7.87 -2.39 -0.02 2.53 16 34 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.05 2.26 6.76 -2.39 -0.02 2.24 16 36 H 0.08 2.42 6.16 -2.38 -0.01 2.41 16 37 H -0.03 -1.87 8.12 -2.38 -0.02 -1.89 16 38 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16 39 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.15 3.09 8.03 -2.91 -0.02 3.07 16 41 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -64.36 338.57 3.66 -60.69 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.01 Total: 9.85 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.89 Total: -21.07 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -4.14 Total: -82.04 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.90 Total: -9.76 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.77 Total: -3.40 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.36 3.66 -60.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238465738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.909 kcal (2) G-P(sol) polarization free energy of solvation -64.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds