Wall clock time and date at job start Tue Mar 31 2020 05:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 C 1.52990 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47398 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47806 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47508 * 180.02562 * 6 5 4 8 8 C 1.33384 * 125.20665 * 89.98047 * 7 6 5 9 9 C 1.38420 * 114.92632 * 180.02562 * 8 7 6 10 10 C 1.33392 * 114.91835 * 0.02562 * 9 8 7 11 11 C 1.50700 * 125.20251 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47375 * 89.99993 * 11 10 9 13 13 C 1.46497 * 119.99599 * 89.99482 * 12 11 10 14 14 C 1.36934 * 119.99889 * 270.00423 * 12 11 10 15 15 H 1.07995 * 120.00505 * 23.03756 * 14 12 11 16 16 C 1.38810 * 119.99567 * 203.04247 * 14 12 11 17 17 N 1.31624 * 120.00298 * 13.02585 * 16 14 12 18 18 Si 1.86803 * 120.00061 * 193.02373 * 16 14 12 19 19 H 1.48502 * 109.46906 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47348 * 120.00009 * 18 16 14 21 21 H 1.48495 * 109.47275 * 240.00291 * 18 16 14 22 22 S 1.75888 * 109.59443 * 359.97438 * 10 9 8 23 23 H 1.08996 * 109.47098 * 299.99735 * 1 2 3 24 24 H 1.09006 * 109.47242 * 59.99443 * 1 2 3 25 25 H 1.08995 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46820 * 240.00602 * 2 1 3 27 27 H 1.08993 * 109.47266 * 120.00231 * 2 1 3 28 28 H 1.08996 * 109.46924 * 60.00158 * 3 2 1 29 29 H 1.09003 * 109.46849 * 300.00658 * 3 2 1 30 30 H 1.08996 * 109.47291 * 60.00139 * 4 3 2 31 31 H 1.08999 * 109.47391 * 300.00421 * 4 3 2 32 32 H 1.09007 * 109.47411 * 59.99529 * 5 4 3 33 33 H 1.09006 * 109.47134 * 300.00073 * 5 4 3 34 34 H 1.09002 * 109.46744 * 59.99560 * 6 5 4 35 35 H 1.09006 * 109.46783 * 300.00226 * 6 5 4 36 36 H 1.08007 * 122.53878 * 0.02562 * 8 7 6 37 37 H 1.08001 * 122.54249 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.46805 * 210.00365 * 11 10 9 39 39 H 1.09002 * 109.47256 * 329.99572 * 11 10 9 40 40 H 1.09001 * 109.46658 * 95.13279 * 13 12 11 41 41 H 1.09005 * 109.46901 * 215.12447 * 13 12 11 42 42 H 1.08991 * 109.47545 * 335.13139 * 13 12 11 43 43 H 0.96997 * 119.99897 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8851 -0.0013 7 6 6.1123 4.3059 0.0000 8 6 6.3692 5.0297 1.0905 9 6 6.8225 6.3142 0.8446 10 6 6.9333 6.6338 -0.4457 11 6 7.4031 7.9647 -0.9739 12 7 8.8575 7.9355 -1.1474 13 6 9.4344 7.5022 -2.4223 14 6 9.6775 8.3129 -0.1177 15 1 9.3194 8.2732 0.9003 16 6 10.9692 8.7468 -0.3826 17 7 11.3250 9.0409 -1.6152 18 14 12.2026 8.9134 1.0104 19 1 11.5590 8.5237 2.2907 20 1 13.3649 8.0262 0.7512 21 1 12.6646 10.3220 1.0967 22 16 6.4485 5.2637 -1.4364 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9329 0.9289 -0.8908 31 1 3.9337 0.9285 0.8890 32 1 3.7170 3.3984 0.8904 33 1 3.7163 3.3994 -0.8896 34 1 5.9725 2.3719 -0.8920 35 1 5.9741 2.3706 0.8881 36 1 6.2337 4.6428 2.0898 37 1 7.0672 7.0057 1.6374 38 1 6.9265 8.1633 -1.9339 39 1 7.1372 8.7506 -0.2669 40 1 9.6411 8.3743 -3.0426 41 1 10.3620 6.9608 -2.2360 42 1 8.7296 6.8492 -2.9369 43 1 12.2277 9.3437 -1.8003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238703518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:33 Heat of formation + Delta-G solvation = 16.362238 kcal Electronic energy + Delta-G solvation = -18989.147539 eV Core-core repulsion = 16160.368631 eV Total energy + Delta-G solvation = -2828.778908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.84447 -36.69039 -35.47106 -33.82473 -31.63970 -30.26192 -28.17702 -25.92464 -25.70142 -23.76918 -22.42088 -21.24214 -21.17776 -20.94974 -18.17951 -16.92289 -16.23840 -15.94818 -14.94732 -14.88332 -14.56064 -14.24959 -13.78991 -13.60933 -13.26481 -13.12122 -12.91731 -12.66643 -12.29107 -12.02938 -11.88977 -11.70816 -11.46295 -11.24683 -11.11702 -10.98259 -10.89944 -10.85577 -10.75232 -10.61372 -10.49588 -10.40989 -10.12116 -9.92643 -9.89313 -8.58332 -7.92908 -7.87463 -6.78585 -5.72992 -3.20360 1.57208 2.17756 2.60176 3.31868 3.38143 3.45323 3.47732 4.45213 4.51392 4.63806 4.78919 4.92375 4.97820 5.16273 5.23661 5.35490 5.40341 5.47801 5.55123 5.62180 5.62521 5.66435 5.70088 5.76497 5.79679 5.87115 5.88751 6.04660 6.05785 6.14345 6.19108 6.24027 6.28446 6.58343 6.73301 6.76208 6.94824 7.14476 7.37506 7.71638 7.81673 8.37622 9.21751 9.83822 10.32456 11.31666 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039994 B = 0.002804 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.935491 B = 9982.388478 C =10277.229140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.041 4.041 7 C -0.201 4.201 8 C -0.126 4.126 9 C -0.152 4.152 10 C -0.147 4.147 11 C 0.209 3.791 12 N -0.589 5.589 13 C 0.161 3.839 14 C -0.253 4.253 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.906 5.906 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 S 0.069 5.931 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.041 0.959 42 H -0.002 1.002 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.489 -14.711 2.377 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.081 4.081 7 C -0.318 4.318 8 C -0.157 4.157 9 C -0.182 4.182 10 C -0.268 4.268 11 C 0.079 3.921 12 N -0.310 5.310 13 C 0.016 3.984 14 C -0.383 4.383 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.551 5.551 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 S 0.332 5.668 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.374 -14.874 0.734 22.883 hybrid contribution 1.042 0.279 2.294 2.535 sum -16.332 -14.595 3.028 22.112 Atomic orbital electron populations 1.21784 0.96047 1.01438 1.01816 1.21548 0.95733 0.97145 1.01910 1.21627 0.95546 0.96524 1.02133 1.21622 0.95238 0.96918 1.02007 1.21620 0.94521 0.96429 1.02572 1.20038 0.95088 0.90420 1.02518 1.24227 1.10995 1.00496 0.96110 1.19985 1.02858 0.94461 0.98439 1.19966 1.04924 0.96917 0.96356 1.26233 1.02743 1.01527 0.96280 1.19366 0.85803 0.88680 0.98261 1.43931 0.98702 1.75372 1.12991 1.20843 0.94834 0.96421 0.86268 1.19206 0.94318 1.37509 0.87255 0.91339 1.25017 0.98851 0.99293 0.96429 1.70084 1.18547 1.48433 1.18062 0.86178 0.81440 0.77272 0.81616 1.20278 1.21611 1.21688 1.84048 1.65215 1.06918 1.10631 0.92793 0.92772 0.92937 0.92120 0.92146 0.92037 0.92004 0.92030 0.92041 0.91755 0.91823 0.91358 0.90763 0.85548 0.84990 0.93409 0.91195 0.94711 0.94026 0.98314 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 4 C -0.12 -0.99 5.21 -26.74 -0.14 -1.13 16 5 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 6 C -0.04 -0.48 5.71 -27.89 -0.16 -0.64 16 7 C -0.20 -3.05 5.76 -36.01 -0.21 -3.26 16 8 C -0.13 -2.02 10.05 -41.21 -0.41 -2.43 16 9 C -0.15 -2.77 10.05 -41.21 -0.41 -3.19 16 10 C -0.15 -2.84 6.09 -36.00 -0.22 -3.06 16 11 C 0.21 4.43 6.13 -5.19 -0.03 4.40 16 12 N -0.59 -15.08 2.90 -182.51 -0.53 -15.61 16 13 C 0.16 4.07 8.98 59.85 0.54 4.61 16 14 C -0.25 -7.03 9.65 -15.06 -0.15 -7.18 16 15 H 0.07 1.87 7.86 -52.49 -0.41 1.45 16 16 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 17 N -0.91 -26.70 10.71 55.49 0.59 -26.11 16 18 Si 0.90 22.16 29.57 -169.99 -5.03 17.13 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 S 0.07 1.17 23.31 -107.50 -2.51 -1.34 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 38 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 39 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 40 H 0.03 0.94 7.34 -51.93 -0.38 0.56 16 41 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 42 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -29.64 363.79 -11.24 -40.89 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -7.91 Total: -4.58 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.35 Total: -15.86 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.06 Total: -41.72 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.64 -11.24 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238703518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.248 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds