Wall clock time and date at job start Tue Mar 31 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38404 * 119.84524 * 2 1 4 4 C 1.37920 * 120.14851 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.07231 * 180.02562 * 4 3 2 6 6 C 1.39669 * 119.84667 * 359.97438 * 4 3 2 7 7 C 1.47824 * 120.14835 * 180.02562 * 6 4 3 8 8 N 1.32581 * 119.99315 * 290.16394 * 7 6 4 9 9 C 1.31735 * 121.72228 * 179.97438 * 8 7 6 10 10 C 1.50705 * 119.24852 * 179.97438 * 9 8 7 11 11 C 1.38876 * 121.50661 * 0.25786 * 9 8 7 12 12 C 1.36886 * 119.79558 * 359.50568 * 11 9 8 13 13 C 1.41126 * 118.39305 * 0.47738 * 12 11 9 14 14 C 1.40886 * 120.71642 * 179.76586 * 13 12 11 15 15 H 1.08003 * 120.00017 * 154.96477 * 14 13 12 16 16 C 1.40074 * 120.00250 * 334.97022 * 14 13 12 17 17 N 1.30767 * 119.99847 * 345.07479 * 16 14 13 18 18 Si 1.86804 * 119.99939 * 165.07132 * 16 14 13 19 19 H 1.48490 * 109.47056 * 60.00043 * 18 16 14 20 20 H 1.48499 * 109.46869 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47083 * 300.00073 * 18 16 14 22 22 C 1.39671 * 119.70105 * 0.27774 * 6 4 3 23 23 C 1.50699 * 120.07575 * 179.72213 * 22 6 4 24 24 C 1.37922 * 119.84349 * 359.42618 * 22 6 4 25 25 H 1.09000 * 109.47281 * 90.00595 * 1 2 3 26 26 H 1.09003 * 109.47139 * 210.00302 * 1 2 3 27 27 H 1.09003 * 109.47459 * 330.00681 * 1 2 3 28 28 H 1.07999 * 119.92144 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47427 * 264.62224 * 5 4 3 30 30 H 1.08998 * 109.47676 * 24.62371 * 5 4 3 31 31 H 1.08997 * 109.47401 * 144.62474 * 5 4 3 32 32 H 1.08996 * 109.46883 * 90.00175 * 10 9 8 33 33 H 1.09003 * 109.46738 * 210.00100 * 10 9 8 34 34 H 1.08995 * 109.47038 * 330.00034 * 10 9 8 35 35 H 1.07993 * 120.10290 * 179.73961 * 11 9 8 36 36 H 1.07994 * 120.80342 * 180.22369 * 12 11 9 37 37 H 0.97003 * 120.00134 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.46734 * 84.57426 * 23 22 6 39 39 H 1.09003 * 109.46699 * 204.56522 * 23 22 6 40 40 H 1.08996 * 109.47322 * 324.56969 * 23 22 6 41 41 H 1.08003 * 119.92587 * 180.32320 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2005 0.0000 4 6 3.5749 1.2078 0.0005 5 6 4.3232 2.5159 0.0011 6 6 4.2764 0.0000 0.0016 7 6 5.7547 0.0001 0.0028 8 7 6.4183 0.3954 -1.0748 9 6 7.7351 0.4096 -1.1109 10 6 8.4324 0.8692 -2.3654 11 6 8.4954 0.0053 -0.0214 12 6 7.8738 -0.4102 1.1252 13 6 6.4629 -0.4228 1.1569 14 6 5.7728 -0.8460 2.3100 15 1 4.7692 -0.4941 2.4982 16 6 6.3882 -1.7229 3.2124 17 7 7.4647 -2.3757 2.8587 18 14 5.6713 -1.9597 4.9210 19 1 4.2837 -2.4765 4.8083 20 1 6.5015 -2.9326 5.6756 21 1 5.6584 -0.6589 5.6371 22 6 3.5750 -1.2077 -0.0037 23 6 4.3233 -2.5157 -0.0089 24 6 2.1958 -1.2004 0.0019 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 1.6520 2.1336 0.0004 29 1 4.5876 2.7837 -1.0218 30 1 3.6925 3.2951 0.4292 31 1 5.2307 2.4151 0.5964 32 1 8.5997 1.9451 -2.3146 33 1 9.3898 0.3564 -2.4575 34 1 7.8118 0.6385 -3.2313 35 1 9.5737 0.0221 -0.0773 36 1 8.4490 -0.7247 1.9834 37 1 7.8907 -2.9833 3.4834 38 1 4.5877 -2.7871 1.0131 39 1 3.6926 -3.2934 -0.4397 40 1 5.2308 -2.4128 -0.6039 41 1 1.6520 -2.1336 0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239548657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:35 Heat of formation + Delta-G solvation = 20.515922 kcal Electronic energy + Delta-G solvation = -22055.541581 eV Core-core repulsion = 19091.498839 eV Total energy + Delta-G solvation = -2964.042742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.36617 -37.95355 -34.36413 -33.37497 -32.77926 -31.01476 -30.46278 -27.88852 -27.28594 -26.33531 -25.99053 -23.93964 -21.62788 -20.70320 -19.94961 -19.34060 -17.36159 -15.75866 -15.60155 -15.23639 -14.46360 -14.05447 -13.76933 -13.52844 -13.20356 -13.09855 -12.69840 -12.48862 -12.35666 -12.32401 -12.14915 -11.94541 -11.79198 -11.73506 -11.46721 -11.39776 -11.14062 -10.97627 -10.93213 -10.62949 -10.52949 -10.39456 -10.23618 -9.75599 -9.38680 -8.31896 -8.06215 -7.84393 -7.66741 -7.34038 -6.88157 -4.49616 1.99169 2.12159 2.58932 2.93042 2.97767 3.01637 3.16343 3.80726 4.38931 4.53093 5.31291 5.34736 5.45338 5.53447 5.57484 5.79498 5.84460 5.85387 6.01796 6.08306 6.09492 6.15702 6.28367 6.30078 6.31577 6.39294 6.42282 6.51511 6.54142 6.60906 6.76082 6.83483 6.85655 6.98049 7.04396 7.09966 7.14266 7.18144 7.35420 7.54315 7.67656 7.73666 7.90619 7.94831 8.40395 8.61797 8.70147 9.63009 9.98295 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.008916 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.521488 B = 3139.559463 C = 4780.056153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.102 4.102 3 C -0.135 4.135 4 C -0.070 4.070 5 C -0.100 4.100 6 C 0.024 3.976 7 C 0.028 3.972 8 N -0.447 5.447 9 C -0.015 4.015 10 C -0.072 4.072 11 C -0.144 4.144 12 C -0.134 4.134 13 C 0.084 3.916 14 C -0.431 4.431 15 H 0.083 0.917 16 C 0.076 3.924 17 N -0.786 5.786 18 Si 0.906 3.094 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.052 4.052 23 C -0.104 4.104 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.284 0.716 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 2.139 -1.702 6.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 C -0.153 4.153 4 C -0.071 4.071 5 C -0.157 4.157 6 C 0.023 3.977 7 C -0.112 4.112 8 N -0.155 5.155 9 C -0.156 4.156 10 C -0.130 4.130 11 C -0.164 4.164 12 C -0.159 4.159 13 C 0.079 3.921 14 C -0.460 4.460 15 H 0.101 0.899 16 C -0.144 4.144 17 N -0.410 5.410 18 Si 0.730 3.270 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.053 4.053 23 C -0.160 4.160 24 C -0.153 4.153 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.870 2.213 -2.345 6.698 hybrid contribution 0.351 -0.543 1.634 1.757 sum -5.519 1.670 -0.712 5.810 Atomic orbital electron populations 1.20684 0.92166 1.01916 1.01429 1.19705 0.95129 0.93227 1.02147 1.20608 0.93327 0.96782 1.04587 1.19960 0.93007 0.94948 0.99187 1.20615 0.99719 0.93340 1.01995 1.18117 0.91222 0.91178 0.97165 1.19291 0.90768 1.10595 0.90549 1.66888 1.08880 1.12160 1.27587 1.20210 0.89384 1.09803 0.96208 1.20263 0.98249 0.99395 0.95110 1.21222 0.98542 1.01492 0.95152 1.21432 0.94780 1.01970 0.97744 1.18283 0.92051 0.89789 0.91978 1.19457 1.01319 1.22172 1.03054 0.89943 1.25978 0.94208 0.93974 1.00198 1.69749 1.16658 1.18553 1.36054 0.86368 0.80135 0.79251 0.81244 1.18618 1.20176 1.18625 1.19961 0.92807 0.95136 0.97392 1.20701 0.99127 0.92711 1.03480 1.20660 0.93440 0.96832 1.04323 0.92008 0.92182 0.92236 0.87173 0.91589 0.93024 0.91557 0.93349 0.93078 0.92739 0.88622 0.85457 0.90463 0.89876 0.93594 0.91756 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 36.00 0.36 -0.98 16 2 C -0.10 -1.72 5.89 -104.50 -0.62 -2.33 16 3 C -0.13 -2.39 9.31 -39.64 -0.37 -2.76 16 4 C -0.07 -1.42 5.92 -104.21 -0.62 -2.04 16 5 C -0.10 -1.86 9.46 36.00 0.34 -1.52 16 6 C 0.02 0.54 4.42 -104.91 -0.46 0.07 16 7 C 0.03 0.67 3.59 -82.24 -0.30 0.37 16 8 N -0.45 -10.79 10.10 -5.44 -0.05 -10.84 16 9 C -0.02 -0.35 6.79 -82.40 -0.56 -0.91 16 10 C -0.07 -1.32 10.15 36.01 0.37 -0.95 16 11 C -0.14 -3.29 9.64 -39.84 -0.38 -3.67 16 12 C -0.13 -3.32 8.74 -38.98 -0.34 -3.66 16 13 C 0.08 2.11 5.26 -106.41 -0.56 1.55 16 14 C -0.43 -10.67 6.75 -37.89 -0.26 -10.92 16 15 H 0.08 2.07 7.23 -52.48 -0.38 1.69 16 16 C 0.08 1.77 5.22 -17.32 -0.09 1.68 16 17 N -0.79 -18.83 10.86 55.55 0.60 -18.23 16 18 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 22 C -0.05 -1.09 5.53 -104.20 -0.58 -1.67 16 23 C -0.10 -2.13 8.79 36.01 0.32 -1.81 16 24 C -0.13 -2.45 9.32 -39.64 -0.37 -2.82 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.80 8.05 -51.93 -0.42 0.39 16 31 H 0.07 1.37 7.29 -51.93 -0.38 0.99 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.13 3.21 6.19 -52.49 -0.33 2.89 16 37 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 38 H 0.08 1.82 7.09 -51.93 -0.37 1.45 16 39 H 0.05 0.79 8.05 -51.93 -0.42 0.38 16 40 H 0.06 1.46 7.30 -51.93 -0.38 1.08 16 41 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -26.61 337.13 -9.53 -36.14 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.02 Total: 7.32 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -4.11 Total: -32.36 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: 0.55 Total: -29.07 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.61 -9.53 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239548657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -26.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds