Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 C 1.52994 * 109.47207 * 239.99814 * 2 1 3 5 5 C 1.50705 * 109.47117 * 119.99568 * 2 1 3 6 6 C 1.38410 * 119.84234 * 60.00120 * 5 2 1 7 7 C 1.37911 * 120.14825 * 179.97438 * 6 5 2 8 8 C 1.39681 * 119.84916 * 0.02562 * 7 6 5 9 9 C 1.47818 * 120.15304 * 179.97438 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97079 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02562 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94020 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00253 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99826 * 0.02562 * 15 14 13 18 18 N 1.30699 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00195 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47187 * 89.99407 * 19 17 15 21 21 H 1.48504 * 109.47353 * 209.99939 * 19 17 15 22 22 H 1.48506 * 109.47093 * 329.99693 * 19 17 15 23 23 C 1.39689 * 119.69671 * 0.24840 * 8 7 6 24 24 C 1.37914 * 119.84107 * 359.49804 * 23 8 7 25 25 H 1.09006 * 109.47137 * 300.00551 * 1 2 3 26 26 H 1.09004 * 109.47307 * 60.00212 * 1 2 3 27 27 H 1.08996 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46888 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47309 * 299.99482 * 3 2 1 30 30 H 1.08997 * 109.47321 * 59.99756 * 3 2 1 31 31 H 1.09003 * 109.47279 * 299.99746 * 4 2 1 32 32 H 1.09000 * 109.47257 * 60.00507 * 4 2 1 33 33 H 1.09002 * 109.47271 * 180.02562 * 4 2 1 34 34 H 1.07998 * 119.92442 * 359.95817 * 6 5 2 35 35 H 1.08004 * 120.07264 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.76123 * 0.04570 * 10 9 8 37 37 H 1.07996 * 120.13652 * 180.02562 * 11 10 9 38 38 H 1.08007 * 119.33144 * 180.28253 * 12 11 10 39 39 H 0.96997 * 120.00579 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.07707 * 179.72773 * 23 8 7 41 41 H 1.08007 * 119.92430 * 180.24990 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 6 1.6959 -2.0355 1.4464 7 6 2.1526 -2.6918 2.5701 8 6 2.9558 -2.0160 3.4916 9 6 3.4485 -2.7128 4.6986 10 6 2.5699 -3.4259 5.5176 11 6 3.0796 -4.0608 6.6367 12 6 4.4387 -3.9768 6.9182 13 7 5.2564 -3.3041 6.1421 14 6 4.8224 -2.6704 5.0478 15 6 5.7309 -1.9587 4.2409 16 1 5.3814 -1.4469 3.3564 17 6 7.0888 -1.9155 4.5850 18 7 7.5119 -2.5354 5.6550 19 14 8.2941 -0.9721 3.5143 20 1 8.3844 0.4320 3.9895 21 1 9.6329 -1.6095 3.5961 22 1 7.8232 -0.9887 2.1059 23 6 3.2866 -0.6770 3.2703 24 6 2.8274 -0.0345 2.1397 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.0743 -2.5566 0.7334 35 1 1.8897 -3.7260 2.7371 36 1 1.5173 -3.4807 5.2827 37 1 2.4245 -4.6199 7.2883 38 1 4.8304 -4.4786 7.7907 39 1 8.4516 -2.5052 5.8934 40 1 3.9036 -0.1473 3.9810 41 1 3.0857 0.9996 1.9652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239606872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = 36.367180 kcal Electronic energy + Delta-G solvation = -21418.287027 eV Core-core repulsion = 18454.931648 eV Total energy + Delta-G solvation = -2963.355380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.43520 -38.10498 -35.87418 -33.72500 -31.49893 -30.69388 -30.13889 -27.92718 -27.22445 -27.16664 -25.72158 -22.97397 -21.92831 -21.01224 -20.45885 -18.80526 -17.52619 -16.32564 -15.65633 -14.80786 -14.68360 -14.38864 -14.15338 -14.02624 -13.82883 -13.34388 -12.88878 -12.87540 -12.50266 -12.33915 -12.15462 -11.84923 -11.68875 -11.58616 -11.57828 -11.24899 -11.12560 -11.07169 -10.84257 -10.80681 -10.52369 -10.24853 -10.06999 -9.79520 -9.44819 -8.50114 -8.22634 -7.97090 -7.62792 -7.22964 -6.48637 -4.56426 1.87377 2.11327 2.73166 3.01451 3.04731 3.08620 3.18678 3.88884 4.46608 4.68897 4.82659 4.92346 5.13283 5.48580 5.56830 5.58461 5.63657 5.66555 5.81152 5.82868 5.85740 5.92898 5.94539 6.05541 6.07369 6.12872 6.17941 6.20597 6.26526 6.40180 6.45083 6.50851 6.70879 6.75870 6.84603 6.98923 7.11310 7.21116 7.30960 7.37317 7.54586 7.71713 7.79059 8.00209 8.19978 8.57433 8.86924 10.03265 10.21857 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.005886 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.667322 B = 4756.204839 C = 6203.337312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.102 4.102 6 C -0.117 4.117 7 C -0.129 4.129 8 C 0.024 3.976 9 C -0.237 4.237 10 C -0.034 4.034 11 C -0.322 4.322 12 C 0.131 3.869 13 N -0.483 5.483 14 C 0.268 3.732 15 C -0.420 4.420 16 H 0.095 0.905 17 C 0.068 3.932 18 N -0.708 5.708 19 Si 0.903 3.097 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.108 4.108 24 C -0.123 4.123 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.274 0.726 40 H 0.125 0.875 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 4.612 -8.907 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.194 4.194 5 C -0.102 4.102 6 C -0.135 4.135 7 C -0.148 4.148 8 C 0.023 3.977 9 C -0.241 4.241 10 C -0.058 4.058 11 C -0.345 4.345 12 C -0.037 4.037 13 N -0.194 5.194 14 C 0.144 3.856 15 C -0.450 4.450 16 H 0.112 0.888 17 C -0.158 4.158 18 N -0.329 5.329 19 Si 0.726 3.274 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.126 4.126 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.649 4.638 -8.618 11.832 hybrid contribution -0.349 0.147 -0.483 0.614 sum -6.999 4.785 -9.101 12.438 Atomic orbital electron populations 1.21870 0.94367 1.01766 1.01282 1.19395 0.95140 0.94789 0.93152 1.21942 1.01322 0.95289 1.01355 1.21877 1.01357 1.00082 0.96079 1.19577 1.00173 0.94262 0.96160 1.20671 1.00991 0.94230 0.97567 1.21215 0.99744 0.99303 0.94498 1.18717 0.93303 0.92413 0.93229 1.19401 0.95316 1.10126 0.99293 1.20885 0.96990 0.94133 0.93821 1.21217 0.97130 1.13123 1.03025 1.22604 0.89871 0.94305 0.96929 1.68766 1.35011 1.10463 1.05200 1.18526 0.88374 0.89486 0.89169 1.19838 0.91447 1.25693 1.08007 0.88750 1.26156 0.99572 0.94985 0.95121 1.70117 1.15932 1.27700 1.19126 0.86383 0.79452 0.80168 0.81367 1.19181 1.19972 1.18251 1.21400 0.99389 0.94409 0.97380 1.20997 0.98796 0.99590 0.94741 0.92651 0.92974 0.92621 0.92249 0.92989 0.92358 0.92601 0.92985 0.92502 0.87368 0.87028 0.88612 0.88743 0.86412 0.91441 0.85680 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.29 37.15 0.31 -1.18 16 2 C -0.02 -0.31 0.85 -155.66 -0.13 -0.44 16 3 C -0.14 -1.60 7.13 37.16 0.26 -1.33 16 4 C -0.14 -1.57 8.28 37.15 0.31 -1.27 16 5 C -0.10 -1.59 4.77 -104.50 -0.50 -2.09 16 6 C -0.12 -1.90 8.69 -39.64 -0.34 -2.25 16 7 C -0.13 -2.45 9.55 -39.16 -0.37 -2.82 16 8 C 0.02 0.52 5.02 -104.90 -0.53 -0.01 16 9 C -0.24 -5.72 5.53 -104.07 -0.58 -6.30 16 10 C -0.03 -0.77 9.67 -38.98 -0.38 -1.14 16 11 C -0.32 -7.19 10.10 -39.22 -0.40 -7.59 16 12 C 0.13 3.17 11.17 -17.48 -0.20 2.97 16 13 N -0.48 -13.21 7.85 -10.91 -0.09 -13.30 16 14 C 0.27 7.20 6.56 -84.71 -0.56 6.64 16 15 C -0.42 -10.97 7.97 -37.89 -0.30 -11.28 16 16 H 0.09 2.35 5.25 -52.49 -0.28 2.08 16 17 C 0.07 1.71 5.50 -17.32 -0.10 1.61 16 18 N -0.71 -18.56 11.46 55.56 0.64 -17.92 16 19 Si 0.90 18.45 29.56 -169.99 -5.02 13.42 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.11 -2.16 7.57 -39.16 -0.30 -2.46 16 24 C -0.12 -2.11 8.96 -39.64 -0.36 -2.46 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 28 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 31 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.51 7.08 -52.49 -0.37 1.14 16 35 H 0.11 2.02 8.05 -52.48 -0.42 1.60 16 36 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 40 H 0.13 2.62 7.26 -52.49 -0.38 2.24 16 41 H 0.12 1.73 5.87 -52.48 -0.31 1.42 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -28.26 332.25 -9.43 -37.69 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.82 Total: 6.48 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -4.14 Total: -31.38 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.55 Total: -31.22 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.26 -9.43 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239606872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.058 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds