Wall clock time and date at job start Tue Mar 31 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 C 1.52997 * 109.47001 * 239.99934 * 2 1 3 5 5 C 1.50707 * 109.47032 * 120.00155 * 2 1 3 6 6 C 1.38401 * 119.84833 * 59.99969 * 5 2 1 7 7 C 1.37915 * 120.14818 * 180.02562 * 6 5 2 8 8 C 1.39667 * 119.84854 * 359.97438 * 7 6 5 9 9 C 1.47854 * 120.15390 * 180.02562 * 8 7 6 10 10 C 1.39307 * 120.77982 * 309.72588 * 9 8 7 11 11 N 1.31672 * 120.66114 * 180.24805 * 10 9 8 12 12 C 1.32202 * 122.50510 * 0.04502 * 11 10 9 13 13 C 1.36489 * 121.50680 * 359.95452 * 12 11 10 14 14 C 1.41121 * 119.10682 * 0.02562 * 13 12 11 15 15 C 1.40932 * 121.11100 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00292 * 154.68800 * 15 14 13 17 17 C 1.40185 * 119.99617 * 334.68734 * 15 14 13 18 18 N 1.30679 * 120.00457 * 344.29625 * 17 15 14 19 19 Si 1.86800 * 119.99815 * 164.29425 * 17 15 14 20 20 H 1.48501 * 109.47057 * 89.99648 * 19 17 15 21 21 H 1.48497 * 109.47185 * 209.99884 * 19 17 15 22 22 H 1.48501 * 109.47125 * 330.00140 * 19 17 15 23 23 C 1.39672 * 119.69978 * 0.27822 * 8 7 6 24 24 C 1.37921 * 119.84483 * 359.47058 * 23 8 7 25 25 H 1.08998 * 109.47222 * 299.99842 * 1 2 3 26 26 H 1.08993 * 109.47370 * 60.00103 * 1 2 3 27 27 H 1.09009 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47271 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46999 * 299.99848 * 3 2 1 30 30 H 1.08998 * 109.46920 * 59.99973 * 3 2 1 31 31 H 1.09005 * 109.47415 * 299.99937 * 4 2 1 32 32 H 1.09000 * 109.47314 * 60.00061 * 4 2 1 33 33 H 1.08998 * 109.47307 * 180.02562 * 4 2 1 34 34 H 1.07997 * 119.92568 * 359.97317 * 6 5 2 35 35 H 1.08006 * 120.07544 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.66635 * 0.26751 * 10 9 8 37 37 H 1.07995 * 119.24908 * 179.97438 * 12 11 10 38 38 H 1.08000 * 120.44909 * 180.02562 * 13 12 11 39 39 H 0.96994 * 120.00660 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.07637 * 179.70441 * 23 8 7 41 41 H 1.07999 * 119.92528 * 180.25774 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2305 6 6 1.6961 -2.0355 1.4464 7 6 2.1519 -2.6916 2.5706 8 6 2.9551 -2.0158 3.4920 9 6 3.4480 -2.7127 4.6993 10 6 2.5735 -3.4205 5.5208 11 7 3.0142 -4.0362 6.5980 12 6 4.2866 -4.0183 6.9561 13 6 5.2253 -3.3541 6.2207 14 6 4.8250 -2.6714 5.0523 15 6 5.7586 -1.9716 4.2618 16 1 5.5635 -1.8095 3.2120 17 6 6.9405 -1.4859 4.8383 18 7 7.0474 -1.4025 6.1380 19 14 8.3627 -0.9577 3.7484 20 1 8.2247 0.4836 3.4184 21 1 9.6444 -1.1812 4.4643 22 1 8.3495 -1.7556 2.4961 23 6 3.2862 -0.6771 3.2705 24 6 2.8278 -0.0347 2.1394 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.0746 -2.5567 0.7333 35 1 1.8891 -3.7258 2.7377 36 1 1.5236 -3.4648 5.2715 37 1 4.5905 -4.5414 7.8507 38 1 6.2604 -3.3510 6.5288 39 1 7.8650 -1.0661 6.5369 40 1 3.9029 -0.1473 3.9815 41 1 3.0865 0.9992 1.9648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239607110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:02 Heat of formation + Delta-G solvation = 23.870675 kcal Electronic energy + Delta-G solvation = -21404.868765 eV Core-core repulsion = 18440.971496 eV Total energy + Delta-G solvation = -2963.897269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.43607 -38.25065 -35.89977 -34.23166 -31.51570 -30.60084 -30.05860 -27.84165 -27.22039 -27.16811 -25.98499 -22.94090 -21.98225 -21.06914 -20.47082 -18.78289 -17.66673 -16.27353 -15.63494 -14.82864 -14.75220 -14.49063 -14.20558 -14.10471 -13.78082 -13.34813 -12.90867 -12.80862 -12.62899 -12.49414 -12.27113 -11.96972 -11.70943 -11.62611 -11.56733 -11.48346 -11.27403 -11.01051 -10.99998 -10.77237 -10.42574 -10.31856 -10.11894 -9.75618 -9.51227 -8.43046 -8.24029 -8.02119 -7.86250 -7.29221 -6.91772 -4.65400 1.85527 2.12592 2.70507 2.84774 2.96506 3.01297 3.19296 3.77828 4.46433 4.56394 4.82591 4.92329 5.13194 5.48145 5.52580 5.57500 5.61965 5.66441 5.68793 5.75648 5.82836 5.90627 5.93016 5.95520 6.06466 6.12979 6.18968 6.25927 6.29618 6.39960 6.46417 6.70867 6.75720 6.81397 6.85674 7.05599 7.09179 7.22476 7.33397 7.37375 7.54625 7.69460 7.84335 8.03626 8.37718 8.62940 8.67324 9.57865 9.94288 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.005874 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.665424 B = 4765.702226 C = 6201.824216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.129 4.129 8 C 0.021 3.979 9 C -0.234 4.234 10 C 0.128 3.872 11 N -0.579 5.579 12 C 0.081 3.919 13 C -0.209 4.209 14 C 0.145 3.855 15 C -0.440 4.440 16 H 0.087 0.913 17 C 0.078 3.922 18 N -0.779 5.779 19 Si 0.908 3.092 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.097 4.097 24 C -0.126 4.126 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.285 0.715 40 H 0.125 0.875 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 4.062 -10.187 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.194 4.194 5 C -0.099 4.099 6 C -0.137 4.137 7 C -0.147 4.147 8 C 0.020 3.980 9 C -0.240 4.240 10 C -0.030 4.030 11 N -0.293 5.293 12 C -0.067 4.067 13 C -0.231 4.231 14 C 0.137 3.863 15 C -0.470 4.470 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.403 5.403 19 Si 0.732 3.268 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.115 4.115 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.627 3.654 -9.415 11.561 hybrid contribution 1.435 0.726 -0.821 1.805 sum -4.192 4.380 -10.236 11.897 Atomic orbital electron populations 1.21872 0.94327 1.01796 1.01305 1.19402 0.95177 0.94785 0.93148 1.21940 1.01295 0.95304 1.01369 1.21875 1.01306 1.00093 0.96098 1.19591 0.99985 0.94252 0.96100 1.20665 1.01119 0.94234 0.97633 1.21235 0.99668 0.99347 0.94430 1.18688 0.93709 0.92543 0.93088 1.19579 0.94274 1.10158 0.99957 1.22082 0.97486 0.92825 0.90640 1.67308 1.17469 1.25550 1.18987 1.21716 0.89272 0.97558 0.98140 1.21906 1.00386 1.01706 0.99096 1.17737 0.89980 0.87911 0.90649 1.19607 1.00668 1.29332 0.97397 0.89524 1.26026 0.99470 0.93604 0.95179 1.69735 1.27446 1.31763 1.11397 0.86293 0.79606 0.79890 0.81060 1.19125 1.19855 1.18173 1.21403 0.98732 0.94374 0.97037 1.21009 0.98927 0.99617 0.94797 0.92619 0.92980 0.92588 0.92277 0.92995 0.92344 0.92588 0.92986 0.92546 0.87340 0.86914 0.86175 0.86467 0.85697 0.90372 0.85667 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.29 37.16 0.31 -1.18 16 2 C -0.03 -0.31 0.85 -155.66 -0.13 -0.44 16 3 C -0.14 -1.60 7.13 37.16 0.26 -1.33 16 4 C -0.14 -1.55 8.28 37.16 0.31 -1.24 16 5 C -0.10 -1.54 4.77 -104.50 -0.50 -2.04 16 6 C -0.12 -1.90 8.69 -39.64 -0.34 -2.25 16 7 C -0.13 -2.38 9.55 -39.17 -0.37 -2.75 16 8 C 0.02 0.43 4.98 -104.89 -0.52 -0.09 16 9 C -0.23 -5.58 5.54 -104.04 -0.58 -6.15 16 10 C 0.13 2.98 10.72 -17.22 -0.18 2.79 16 11 N -0.58 -14.11 10.32 -13.37 -0.14 -14.25 16 12 C 0.08 1.94 11.09 -18.02 -0.20 1.74 16 13 C -0.21 -5.28 8.72 -39.12 -0.34 -5.62 16 14 C 0.15 3.71 5.59 -106.26 -0.59 3.12 16 15 C -0.44 -10.94 7.32 -37.83 -0.28 -11.22 16 16 H 0.09 2.14 6.72 -52.49 -0.35 1.79 16 17 C 0.08 1.84 5.21 -17.31 -0.09 1.75 16 18 N -0.78 -18.89 10.95 55.56 0.61 -18.28 16 19 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.10 -1.96 8.09 -39.16 -0.32 -2.27 16 24 C -0.13 -2.14 8.96 -39.64 -0.36 -2.50 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 7.37 -51.92 -0.38 0.22 16 28 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.66 7.50 -51.93 -0.39 0.27 16 31 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 1.49 7.08 -52.49 -0.37 1.12 16 35 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.12 2.49 8.05 -52.49 -0.42 2.07 16 37 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 38 H 0.13 3.19 6.26 -52.49 -0.33 2.86 16 39 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 40 H 0.13 2.70 7.40 -52.49 -0.39 2.31 16 41 H 0.12 1.74 5.87 -52.49 -0.31 1.43 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -26.59 332.20 -9.29 -35.88 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.81 Total: 8.58 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -3.93 Total: -29.69 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.47 Total: -32.53 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.59 -9.29 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239607110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.754 kcal (2) G-P(sol) polarization free energy of solvation -26.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds