Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46683 * 2 1 4 4 C 1.52999 * 109.46852 * 240.00375 * 2 1 3 5 5 C 1.50691 * 109.47520 * 120.00115 * 2 1 3 6 6 C 1.38323 * 119.87805 * 60.00222 * 5 2 1 7 7 C 1.38021 * 120.12487 * 180.02562 * 6 5 2 8 8 C 1.39345 * 119.87156 * 359.97309 * 7 6 5 9 9 C 1.48389 * 120.11712 * 179.97438 * 8 7 6 10 10 C 1.40039 * 120.82190 * 359.97438 * 9 8 7 11 11 C 1.38510 * 119.42516 * 180.02562 * 10 9 8 12 12 N 1.31476 * 121.14259 * 0.02562 * 11 10 9 13 13 C 1.33650 * 121.79504 * 359.97438 * 12 11 10 14 14 C 1.41428 * 119.77644 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99450 * 187.20014 * 14 13 12 16 16 C 1.40030 * 120.00290 * 7.20200 * 14 13 12 17 17 N 1.30735 * 119.99904 * 7.21909 * 16 14 13 18 18 Si 1.86800 * 120.00148 * 187.22183 * 16 14 13 19 19 H 1.48500 * 109.46875 * 265.10290 * 18 16 14 20 20 H 1.48498 * 109.47280 * 25.10545 * 18 16 14 21 21 H 1.48501 * 109.47195 * 145.10541 * 18 16 14 22 22 C 1.39311 * 120.82219 * 180.28090 * 9 8 7 23 23 C 1.39336 * 119.76088 * 0.25620 * 8 7 6 24 24 C 1.38020 * 119.87597 * 359.51437 * 23 8 7 25 25 H 1.09008 * 109.46778 * 299.99320 * 1 2 3 26 26 H 1.08993 * 109.47891 * 59.99606 * 1 2 3 27 27 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46849 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47344 * 300.00217 * 3 2 1 30 30 H 1.08995 * 109.47379 * 60.00364 * 3 2 1 31 31 H 1.08998 * 109.47289 * 299.99247 * 4 2 1 32 32 H 1.09002 * 109.47080 * 59.99944 * 4 2 1 33 33 H 1.08995 * 109.47160 * 179.97438 * 4 2 1 34 34 H 1.08006 * 119.94030 * 359.97171 * 6 5 2 35 35 H 1.07995 * 120.06510 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.28792 * 0.02562 * 10 9 8 37 37 H 1.07992 * 119.43100 * 180.02562 * 11 10 9 38 38 H 0.97002 * 120.00360 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.57948 * 359.97438 * 22 9 8 40 40 H 1.08003 * 120.06102 * 179.74463 * 23 8 7 41 41 H 1.08000 * 119.94026 * 180.23206 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2303 6 6 1.6968 -2.0347 1.4467 7 6 2.1537 -2.6901 2.5721 8 6 2.9550 -2.0153 3.4910 9 6 3.4488 -2.7145 4.7031 10 6 3.1198 -4.0545 4.9425 11 6 3.5960 -4.6787 6.0836 12 7 4.3512 -4.0348 6.9460 13 6 4.6940 -2.7558 6.7645 14 6 5.5081 -2.1044 7.7201 15 1 5.6916 -1.0432 7.6393 16 6 6.0761 -2.8353 8.7707 17 7 5.9724 -4.1384 8.7914 18 14 6.9818 -1.9486 10.1429 19 1 8.4357 -1.9245 9.8414 20 1 6.4756 -0.5567 10.2514 21 1 6.7542 -2.6596 11.4266 22 6 4.2459 -2.0524 5.6342 23 6 3.2860 -0.6799 3.2704 24 6 2.8275 -0.0357 2.1392 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1299 -0.7208 -1.2496 34 1 1.0753 -2.5567 0.7341 35 1 1.8908 -3.7240 2.7403 36 1 2.5000 -4.5965 4.2435 37 1 3.3427 -5.7121 6.2682 38 1 6.3662 -4.6449 9.5190 39 1 4.5177 -1.0175 5.4875 40 1 3.9033 -0.1510 3.9815 41 1 3.0865 0.9982 1.9653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239607330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = 35.376350 kcal Electronic energy + Delta-G solvation = -20706.588662 eV Core-core repulsion = 17743.190317 eV Total energy + Delta-G solvation = -2963.398345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.72788 -38.14850 -36.20554 -33.63126 -31.72400 -31.00612 -29.92287 -28.11901 -27.43264 -27.34031 -25.72699 -23.30944 -22.44585 -20.80691 -20.58701 -19.09179 -17.59837 -16.33658 -15.50212 -15.01894 -14.89615 -14.65706 -14.33685 -13.92373 -13.69453 -13.44936 -13.17144 -13.10933 -12.82762 -12.43504 -12.37047 -12.10764 -11.87037 -11.77181 -11.53838 -11.43070 -11.24458 -11.08084 -11.01500 -10.79506 -10.60208 -10.38440 -10.24266 -9.78865 -9.46938 -9.00225 -8.59090 -7.67952 -7.57744 -7.39584 -6.47828 -4.53170 1.40933 1.76681 2.74589 3.05610 3.08221 3.11566 3.19749 3.93448 4.25741 4.59485 4.71471 4.76435 4.93729 5.24989 5.27298 5.27811 5.42818 5.46823 5.50402 5.65676 5.72987 5.75117 5.76440 5.87568 5.90380 5.95014 5.97633 6.05685 6.19075 6.21510 6.24481 6.33466 6.53685 6.68988 6.74527 6.76392 6.90114 7.00652 7.15490 7.28982 7.34192 7.53419 7.72281 7.99442 8.21053 8.63826 8.88906 10.08150 10.29571 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.003425 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.053743 B = 8172.259202 C = 8858.179960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.021 4.021 9 C -0.002 4.002 10 C -0.304 4.304 11 C 0.124 3.876 12 N -0.486 5.486 13 C 0.257 3.743 14 C -0.435 4.435 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.719 5.719 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.261 1.261 21 H -0.275 1.275 22 C -0.254 4.254 23 C -0.112 4.112 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.274 0.726 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 6.561 -13.777 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.130 4.130 8 C -0.021 4.021 9 C -0.008 4.008 10 C -0.327 4.327 11 C -0.041 4.041 12 N -0.199 5.199 13 C 0.133 3.867 14 C -0.466 4.466 15 H 0.102 0.898 16 C -0.153 4.153 17 N -0.340 5.340 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.184 1.184 21 H -0.200 1.200 22 C -0.277 4.277 23 C -0.130 4.130 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.339 5.963 -12.884 15.548 hybrid contribution 0.095 0.656 -0.127 0.675 sum -6.243 6.619 -13.011 15.877 Atomic orbital electron populations 1.21882 0.94019 1.01969 1.01573 1.19447 0.95445 0.94899 0.92934 1.21953 1.01258 0.95155 1.01658 1.21881 1.01292 1.00175 0.96099 1.19700 0.98950 0.94186 0.95984 1.20799 1.00851 0.94271 0.97622 1.21247 0.97804 1.00028 0.93935 1.19076 0.95770 0.93220 0.94084 1.18625 0.96414 0.93521 0.92225 1.21335 1.12707 0.95592 1.03097 1.22422 0.92902 0.98396 0.90371 1.68632 1.13587 1.08975 1.28705 1.18528 0.90073 0.88137 0.89979 1.19603 1.24412 0.95905 1.06706 0.89820 1.26039 0.95666 0.94755 0.98883 1.70064 1.29405 1.06507 1.28046 0.86330 0.79892 0.80634 0.80084 1.19496 1.18438 1.20007 1.21865 1.07518 1.00100 0.98199 1.21328 0.99933 0.94369 0.97354 1.21035 0.98690 0.99818 0.94414 0.92520 0.92691 0.92489 0.92256 0.92709 0.92256 0.92484 0.92699 0.92513 0.86713 0.85907 0.88507 0.86309 0.91485 0.87962 0.85725 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.29 37.16 0.31 -0.99 16 2 C -0.03 -0.28 0.85 -155.66 -0.13 -0.42 16 3 C -0.14 -1.33 7.13 37.16 0.26 -1.07 16 4 C -0.14 -1.30 8.29 37.16 0.31 -0.99 16 5 C -0.09 -1.18 4.77 -104.56 -0.50 -1.68 16 6 C -0.12 -1.66 8.69 -39.63 -0.34 -2.01 16 7 C -0.11 -1.87 9.45 -39.25 -0.37 -2.25 16 8 C -0.02 -0.41 5.88 -104.90 -0.62 -1.03 16 9 C 0.00 -0.04 5.91 -104.64 -0.62 -0.66 16 10 C -0.30 -6.87 9.52 -38.81 -0.37 -7.24 16 11 C 0.12 3.04 11.17 -17.60 -0.20 2.84 16 12 N -0.49 -13.55 7.96 -11.21 -0.09 -13.64 16 13 C 0.26 7.09 6.52 -85.02 -0.55 6.54 16 14 C -0.44 -11.69 9.13 -37.70 -0.34 -12.03 16 15 H 0.08 2.09 7.86 -52.49 -0.41 1.68 16 16 C 0.07 1.84 5.47 -17.35 -0.09 1.74 16 17 N -0.72 -19.27 11.56 55.55 0.64 -18.63 16 18 Si 0.91 18.60 29.57 -169.99 -5.03 13.57 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.25 -6.28 9.22 -38.34 -0.35 -6.63 16 23 C -0.11 -1.93 9.45 -39.25 -0.37 -2.30 16 24 C -0.12 -1.76 8.96 -39.63 -0.36 -2.12 16 25 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 28 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.55 7.51 -51.93 -0.39 0.17 16 31 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.11 1.36 7.08 -52.48 -0.37 0.99 16 35 H 0.12 1.95 6.29 -52.49 -0.33 1.62 16 36 H 0.10 1.90 6.32 -52.49 -0.33 1.57 16 37 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 38 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 39 H 0.10 2.32 6.33 -52.49 -0.33 1.99 16 40 H 0.12 2.13 6.29 -52.48 -0.33 1.80 16 41 H 0.12 1.48 5.87 -52.49 -0.31 1.17 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -29.34 331.96 -9.44 -38.78 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.63 Total: 5.19 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -4.34 Total: -30.28 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.55 Total: -32.27 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.34 -9.44 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239607330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.161 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds