Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00498 * 2 1 4 4 C 1.46905 * 111.00262 * 123.95630 * 2 1 3 5 5 C 1.50694 * 109.47139 * 66.03923 * 4 2 1 6 6 C 1.37963 * 120.07706 * 253.72602 * 5 4 2 7 7 C 1.38362 * 120.14385 * 180.27648 * 6 5 4 8 8 C 1.38411 * 120.29325 * 359.72283 * 7 6 5 9 9 C 1.37915 * 120.14584 * 359.97438 * 8 7 6 10 10 C 1.39590 * 120.07356 * 73.45011 * 5 4 2 11 11 C 1.47985 * 120.14206 * 359.97438 * 10 5 4 12 12 C 1.39936 * 119.87836 * 236.63852 * 11 10 5 13 13 C 1.36255 * 120.11709 * 180.02562 * 12 11 10 14 14 C 1.40926 * 119.88017 * 359.97174 * 13 12 11 15 15 C 1.41029 * 120.11890 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99673 * 152.11003 * 15 14 13 17 17 C 1.40013 * 120.00326 * 332.11634 * 15 14 13 18 18 N 1.30796 * 119.99662 * 345.04726 * 17 15 14 19 19 Si 1.86794 * 120.00090 * 165.04331 * 17 15 14 20 20 H 1.48501 * 109.47483 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46962 * 120.00330 * 19 17 15 22 22 H 1.48503 * 109.47448 * 239.99832 * 19 17 15 23 23 C 1.40932 * 119.76876 * 0.02562 * 14 13 12 24 24 C 1.36256 * 119.87089 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.46863 * 296.04847 * 1 2 3 26 26 H 1.08998 * 109.47231 * 56.04568 * 1 2 3 27 27 H 1.09005 * 109.47554 * 176.04879 * 1 2 3 28 28 H 1.08994 * 109.47645 * 183.95935 * 3 2 1 29 29 H 1.09010 * 109.46834 * 303.95527 * 3 2 1 30 30 H 1.08993 * 109.47470 * 63.95181 * 3 2 1 31 31 H 1.09008 * 109.46654 * 306.04303 * 4 2 1 32 32 H 1.08998 * 109.47454 * 186.04791 * 4 2 1 33 33 H 1.08002 * 119.92303 * 359.97438 * 6 5 4 34 34 H 1.08007 * 119.85534 * 179.74862 * 7 6 5 35 35 H 1.08006 * 119.92495 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.06847 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.94442 * 359.72256 * 12 11 10 38 38 H 1.08000 * 120.05877 * 179.97438 * 13 12 11 39 39 H 0.96999 * 120.00226 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.06888 * 179.97438 * 23 14 13 41 41 H 1.07998 * 119.93691 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.6500 -2.7822 1.7563 7 6 0.3235 -4.1188 1.6103 8 6 0.9797 -4.8995 0.6745 9 6 1.9639 -4.3488 -0.1193 10 6 2.2985 -3.0008 0.0233 11 6 3.3535 -2.4032 -0.8251 12 6 3.2424 -2.4596 -2.2189 13 6 4.2112 -1.9114 -3.0047 14 6 5.3262 -1.2863 -2.4114 15 6 6.3316 -0.7168 -3.2199 16 1 6.9161 0.1128 -2.8505 17 6 6.5718 -1.2267 -4.5016 18 7 6.0868 -2.3924 -4.8431 19 14 7.5849 -0.2423 -5.7237 20 1 8.0150 1.0332 -5.0965 21 1 8.7820 -1.0268 -6.1199 22 1 6.7639 0.0491 -6.9263 23 6 5.4330 -1.2322 -1.0072 24 6 4.4590 -1.7845 -0.2307 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0710 29 1 1.5898 1.9163 -0.8525 30 1 1.7045 1.8723 0.9232 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 0.1345 -2.1785 2.4886 34 1 -0.4470 -4.5548 2.2289 35 1 0.7199 -5.9421 0.5652 36 1 2.4754 -4.9592 -0.8488 37 1 2.3897 -2.9429 -2.6727 38 1 4.1247 -1.9559 -4.0804 39 1 6.2535 -2.7460 -5.7308 40 1 6.2856 -0.7547 -0.5474 41 1 4.5400 -1.7441 0.8455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239681842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = 45.453968 kcal Electronic energy + Delta-G solvation = -21601.025194 eV Core-core repulsion = 18638.063847 eV Total energy + Delta-G solvation = -2962.961347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.33572 -37.16510 -36.58689 -33.79466 -31.57194 -31.13106 -29.41892 -28.63304 -27.25774 -26.47085 -25.01503 -22.32614 -22.04606 -20.83628 -20.42676 -19.63182 -17.31159 -16.28203 -15.35796 -15.23001 -15.11356 -15.08319 -14.15345 -14.12846 -13.85613 -13.40501 -13.25870 -12.68598 -12.42964 -12.13006 -12.07574 -12.00456 -11.88871 -11.57077 -11.42338 -11.35444 -11.13678 -11.06899 -10.90493 -10.68640 -10.29201 -10.26957 -9.53577 -9.37631 -9.21787 -8.43379 -8.19385 -7.92510 -7.45089 -7.05069 -6.74015 -4.31273 1.75041 1.81695 2.80690 3.07872 3.12990 3.19159 3.22459 3.93826 4.11110 4.52127 4.69926 5.18467 5.22657 5.40092 5.45202 5.47746 5.56502 5.64019 5.74790 5.78219 5.83353 5.97430 6.01337 6.10355 6.15836 6.25068 6.30790 6.39959 6.49633 6.56739 6.84001 6.90733 7.01937 7.06830 7.15370 7.29920 7.38169 7.40647 7.44360 7.48867 7.68158 7.95687 8.08934 8.17536 8.32482 8.66931 8.90741 9.01394 10.20222 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.004934 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.694266 B = 5673.660137 C = 6433.769649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.523 5.523 3 C 0.030 3.970 4 C 0.098 3.902 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.149 4.149 8 C -0.119 4.119 9 C -0.128 4.128 10 C 0.034 3.966 11 C -0.171 4.171 12 C -0.070 4.070 13 C -0.162 4.162 14 C 0.118 3.882 15 C -0.461 4.461 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.224 4.224 24 C -0.070 4.070 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.280 0.720 40 H 0.089 0.911 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 1.134 7.839 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.246 5.246 3 C -0.119 4.119 4 C -0.029 4.029 5 C -0.089 4.089 6 C -0.134 4.134 7 C -0.167 4.167 8 C -0.137 4.137 9 C -0.146 4.146 10 C 0.033 3.967 11 C -0.172 4.172 12 C -0.089 4.089 13 C -0.181 4.181 14 C 0.116 3.884 15 C -0.490 4.490 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.244 4.244 24 C -0.088 4.088 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.377 0.761 7.201 11.072 hybrid contribution 0.118 0.654 0.109 0.673 sum -8.259 1.415 7.309 11.119 Atomic orbital electron populations 1.22366 0.88250 1.02116 0.99374 1.61817 1.06887 1.13103 1.42808 1.22340 1.01557 0.88573 0.99387 1.21096 1.01401 0.89996 0.90396 1.19843 0.96782 0.94933 0.97364 1.20853 0.97740 0.95201 0.99654 1.20913 1.01356 0.94240 1.00199 1.20988 0.96912 0.99218 0.96599 1.21383 0.98239 0.94925 1.00042 1.18897 0.93452 0.91688 0.92627 1.17852 0.96609 1.10628 0.92120 1.20324 0.97384 0.99003 0.92191 1.20902 0.93925 1.04104 0.99191 1.17623 0.91097 0.88757 0.90945 1.19597 1.16105 1.15126 0.98180 0.90498 1.25908 0.95340 0.94181 0.98794 1.69812 1.36917 1.14661 1.20491 0.86292 0.79606 0.80814 0.80186 1.18434 1.20029 1.19737 1.20626 1.00059 1.09596 0.94122 1.20147 0.94323 0.97905 0.96459 0.96624 0.91911 0.91405 0.90835 0.91659 0.96660 0.95515 0.88928 0.87302 0.87143 0.86952 0.86296 0.89798 0.86840 0.90950 0.89229 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.36 60.06 0.56 0.95 16 2 N -0.52 -8.55 4.83 -252.72 -1.22 -9.77 16 3 C 0.03 0.43 9.57 60.06 0.57 1.01 16 4 C 0.10 1.57 4.40 -4.98 -0.02 1.55 16 5 C -0.09 -1.49 4.39 -104.22 -0.46 -1.95 16 6 C -0.12 -1.70 9.21 -39.64 -0.37 -2.06 16 7 C -0.15 -2.08 10.04 -39.47 -0.40 -2.47 16 8 C -0.12 -1.77 10.03 -39.64 -0.40 -2.16 16 9 C -0.13 -2.24 9.63 -39.19 -0.38 -2.61 16 10 C 0.03 0.64 5.39 -104.88 -0.56 0.08 16 11 C -0.17 -3.71 4.78 -104.63 -0.50 -4.21 16 12 C -0.07 -1.65 9.55 -39.66 -0.38 -2.03 16 13 C -0.16 -4.17 8.60 -39.28 -0.34 -4.51 16 14 C 0.12 3.10 5.54 -106.80 -0.59 2.51 16 15 C -0.46 -12.08 9.03 -37.86 -0.34 -12.42 16 16 H 0.08 1.95 7.89 -52.48 -0.41 1.53 16 17 C 0.08 1.88 5.17 -17.33 -0.09 1.79 16 18 N -0.79 -20.44 11.00 55.55 0.61 -19.83 16 19 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.22 -5.39 9.73 -39.28 -0.38 -5.77 16 24 C -0.07 -1.54 7.90 -39.66 -0.31 -1.85 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.07 1.00 6.94 -51.93 -0.36 0.64 16 28 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 29 H 0.06 0.90 8.12 -51.92 -0.42 0.48 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.38 7.92 -51.92 -0.41 -0.03 16 32 H 0.09 1.59 5.09 -51.93 -0.26 1.33 16 33 H 0.11 1.36 7.99 -52.49 -0.42 0.94 16 34 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.11 3.05 6.29 -52.49 -0.33 2.72 16 39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 40 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.08 1.66 6.98 -52.49 -0.37 1.30 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -27.12 337.40 -10.86 -37.98 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.92 Total: 7.17 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -4.38 Total: -34.18 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: -0.61 Total: -29.60 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.12 -10.86 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239681842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.431 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds