Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99787 * 2 1 4 4 C 1.46898 * 110.99530 * 123.95301 * 2 1 3 5 5 C 1.50703 * 109.47253 * 66.04521 * 4 2 1 6 6 C 1.38034 * 120.06553 * 251.45225 * 5 4 2 7 7 C 1.38297 * 120.12628 * 180.02562 * 6 5 4 8 8 C 1.38350 * 120.23814 * 359.97438 * 7 6 5 9 9 C 1.37999 * 120.11821 * 0.02605 * 8 7 6 10 10 C 1.39315 * 120.05708 * 71.75770 * 5 4 2 11 11 C 1.48415 * 120.11934 * 359.97314 * 10 5 4 12 12 C 1.39722 * 120.00001 * 56.83015 * 11 10 5 13 13 C 1.38393 * 120.37640 * 179.97438 * 12 11 10 14 14 C 1.37725 * 120.38250 * 359.95027 * 13 12 11 15 15 C 1.40749 * 119.98529 * 0.02919 * 14 13 12 16 16 C 1.41420 * 120.18574 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00467 * 24.35498 * 16 15 14 18 18 C 1.39936 * 120.00078 * 204.36645 * 16 15 14 19 19 N 1.30830 * 119.99771 * 16.02825 * 18 16 15 20 20 Si 1.86792 * 120.00071 * 196.03052 * 18 16 15 21 21 H 1.48501 * 109.47290 * 59.99728 * 20 18 16 22 22 H 1.48503 * 109.47341 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47462 * 299.99792 * 20 18 16 24 24 C 1.38728 * 119.99558 * 236.54769 * 11 10 5 25 25 H 1.09001 * 109.47154 * 296.04982 * 1 2 3 26 26 H 1.09002 * 109.46625 * 56.04897 * 1 2 3 27 27 H 1.08996 * 109.47121 * 176.04335 * 1 2 3 28 28 H 1.09000 * 109.46667 * 183.94770 * 3 2 1 29 29 H 1.08995 * 109.47420 * 303.95027 * 3 2 1 30 30 H 1.09003 * 109.46950 * 63.95689 * 3 2 1 31 31 H 1.08999 * 109.47443 * 306.04737 * 4 2 1 32 32 H 1.09000 * 109.47241 * 186.04997 * 4 2 1 33 33 H 1.08002 * 119.93786 * 0.04900 * 6 5 4 34 34 H 1.07995 * 119.88335 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.93799 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.06185 * 180.02562 * 9 8 7 37 37 H 1.08000 * 119.81407 * 359.97337 * 12 11 10 38 38 H 1.08000 * 119.80801 * 179.97438 * 13 12 11 39 39 H 1.07990 * 120.00646 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00096 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.19016 * 0.02671 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6368 -2.2204 0.9729 6 6 0.6824 -2.7940 1.7886 7 6 0.3527 -4.1287 1.6389 8 6 0.9765 -4.8962 0.6714 9 6 1.9321 -4.3330 -0.1494 10 6 2.2727 -2.9902 0.0013 11 6 3.3041 -2.3805 -0.8745 12 6 4.4245 -1.7650 -0.3105 13 6 5.3913 -1.1946 -1.1198 14 6 5.2607 -1.2278 -2.4905 15 6 4.1386 -1.8441 -3.0753 16 6 3.9999 -1.8803 -4.4823 17 1 4.8737 -1.8108 -5.1131 18 6 2.7303 -2.0057 -5.0572 19 7 1.6612 -1.7771 -4.3384 20 14 2.5618 -2.4997 -6.8507 21 1 3.1826 -3.8328 -7.0575 22 1 1.1233 -2.5624 -7.2140 23 1 3.2456 -1.4971 -7.7067 24 6 3.1587 -2.4269 -2.2534 25 1 -0.3633 0.4513 0.9233 26 1 -0.3632 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7044 1.8723 0.9234 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1758 33 1 0.1918 -2.1992 2.5449 34 1 -0.3949 -4.5734 2.2789 35 1 0.7150 -5.9379 0.5585 36 1 2.4182 -4.9328 -0.9046 37 1 4.5367 -1.7343 0.7632 38 1 6.2535 -0.7208 -0.6740 39 1 6.0190 -0.7811 -3.1162 40 1 0.7812 -1.8645 -4.7368 41 1 2.2959 -2.9055 -2.6927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239682044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = 47.493718 kcal Electronic energy + Delta-G solvation = -22024.438098 eV Core-core repulsion = 19061.565201 eV Total energy + Delta-G solvation = -2962.872897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.31377 -37.03306 -36.48412 -33.63488 -31.76616 -31.12887 -29.42702 -28.03444 -27.12091 -26.21281 -25.13887 -22.57154 -22.03925 -20.65087 -20.51877 -19.45159 -17.21552 -15.97329 -15.36669 -15.14930 -15.00913 -14.74887 -14.48507 -14.04228 -13.85198 -13.35007 -13.20353 -12.63973 -12.43377 -12.18318 -12.01484 -11.94325 -11.60162 -11.52756 -11.24097 -11.15945 -11.05362 -10.97758 -10.75547 -10.62280 -10.38225 -10.23022 -9.55089 -9.33929 -9.09731 -8.39499 -8.24674 -7.75586 -7.26488 -7.04203 -6.61713 -4.25422 1.78421 1.85103 2.88775 3.10958 3.13303 3.14967 3.31183 4.00174 4.18087 4.62378 4.74276 5.24026 5.27276 5.43249 5.50297 5.58406 5.66764 5.70141 5.79577 5.89099 5.91962 6.01778 6.08267 6.18755 6.33130 6.35485 6.36211 6.47912 6.52109 6.60134 6.84919 6.91560 7.00646 7.15449 7.16210 7.35610 7.44885 7.50719 7.56667 7.57297 7.70621 7.97800 8.14319 8.17760 8.39149 8.72173 8.99873 9.06908 10.29802 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.006392 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.600507 B = 4379.564475 C = 4715.477982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.517 5.517 3 C 0.033 3.967 4 C 0.096 3.904 5 C -0.077 4.077 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.122 4.122 9 C -0.117 4.117 10 C 0.015 3.985 11 C -0.029 4.029 12 C -0.222 4.222 13 C -0.097 4.097 14 C -0.225 4.225 15 C 0.109 3.891 16 C -0.466 4.466 17 H 0.074 0.926 18 C 0.076 3.924 19 N -0.786 5.786 20 Si 0.903 3.097 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.127 4.127 25 H 0.012 0.988 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.012 0.988 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.278 0.722 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -0.255 8.651 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.240 5.240 3 C -0.115 4.115 4 C -0.031 4.031 5 C -0.077 4.077 6 C -0.138 4.138 7 C -0.159 4.159 8 C -0.140 4.140 9 C -0.135 4.135 10 C 0.014 3.986 11 C -0.030 4.030 12 C -0.241 4.241 13 C -0.115 4.115 14 C -0.245 4.245 15 C 0.107 3.893 16 C -0.495 4.495 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.411 5.411 20 Si 0.728 3.272 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.146 4.146 25 H 0.030 0.970 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.788 -0.441 8.188 9.032 hybrid contribution -0.568 0.273 -0.126 0.643 sum -4.356 -0.168 8.061 9.165 Atomic orbital electron populations 1.22329 0.88080 1.02170 0.99117 1.61775 1.07005 1.12984 1.42217 1.22299 1.01281 0.88703 0.99210 1.21130 1.01493 0.89943 0.90573 1.19769 0.96749 0.95056 0.96155 1.20860 0.98079 0.95196 0.99665 1.20918 1.01049 0.94282 0.99613 1.20985 0.97282 0.99364 0.96363 1.21296 0.97986 0.94863 0.99316 1.18984 0.94343 0.92178 0.93080 1.18253 0.92703 0.99167 0.92828 1.20180 0.97530 1.10045 0.96355 1.20357 0.97246 0.99919 0.94007 1.20948 1.01816 1.08183 0.93517 1.17500 0.90483 0.88069 0.93225 1.19492 0.93023 1.45142 0.91885 0.90797 1.25858 0.95607 0.92748 0.99942 1.69847 0.99073 1.34467 1.37762 0.86464 0.77766 0.80223 0.82794 1.18988 1.20470 1.19169 1.21334 1.00899 1.02176 0.90213 0.96953 0.91765 0.91465 0.91148 0.91615 0.96932 0.95636 0.88800 0.87133 0.87003 0.86782 0.86136 0.89901 0.89776 0.89437 0.91080 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.37 60.07 0.56 1.08 16 2 N -0.52 -9.44 4.73 -252.72 -1.20 -10.63 16 3 C 0.03 0.54 9.57 60.06 0.57 1.11 16 4 C 0.10 1.64 4.38 -4.98 -0.02 1.62 16 5 C -0.08 -1.38 4.33 -104.30 -0.45 -1.83 16 6 C -0.12 -1.85 9.36 -39.63 -0.37 -2.22 16 7 C -0.14 -2.06 10.04 -39.52 -0.40 -2.46 16 8 C -0.12 -1.91 10.03 -39.63 -0.40 -2.30 16 9 C -0.12 -2.17 9.61 -39.26 -0.38 -2.54 16 10 C 0.01 0.30 5.39 -104.89 -0.57 -0.27 16 11 C -0.03 -0.67 4.67 -104.97 -0.49 -1.16 16 12 C -0.22 -4.87 8.01 -38.97 -0.31 -5.18 16 13 C -0.10 -2.17 10.01 -39.71 -0.40 -2.57 16 14 C -0.22 -5.54 9.79 -38.82 -0.38 -5.92 16 15 C 0.11 2.91 5.58 -106.87 -0.60 2.32 16 16 C -0.47 -12.41 9.06 -37.74 -0.34 -12.75 16 17 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16 18 C 0.08 1.93 5.18 -17.34 -0.09 1.84 16 19 N -0.79 -20.47 10.85 55.55 0.60 -19.87 16 20 Si 0.90 18.94 29.59 -169.99 -5.03 13.91 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.13 -3.26 8.25 -38.53 -0.32 -3.58 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 27 H 0.07 1.17 7.04 -51.93 -0.37 0.80 16 28 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 29 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.39 7.90 -51.93 -0.41 -0.02 16 32 H 0.09 1.69 5.19 -51.93 -0.27 1.42 16 33 H 0.11 1.46 7.98 -52.49 -0.42 1.04 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.08 1.67 6.96 -52.49 -0.37 1.30 16 38 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 40 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 41 H 0.12 3.26 6.09 -52.48 -0.32 2.94 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -27.64 337.42 -10.83 -38.47 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.92 Total: 7.86 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -4.37 Total: -34.82 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: -0.59 Total: -30.50 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.64 -10.83 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239682044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.968 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds