Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 110.99960 * 2 1 4 4 C 1.46901 * 110.99679 * 123.95169 * 2 1 3 5 5 C 1.50702 * 109.46819 * 163.97673 * 4 2 1 6 6 C 1.37952 * 120.08000 * 352.81324 * 5 4 2 7 7 C 1.38373 * 120.15147 * 180.29744 * 6 5 4 8 8 C 1.38413 * 120.29955 * 359.72350 * 7 6 5 9 9 C 1.37907 * 120.15210 * 359.97438 * 8 7 6 10 10 C 1.39629 * 120.07887 * 172.55549 * 5 4 2 11 11 C 1.47878 * 120.14480 * 359.97438 * 10 5 4 12 12 C 1.39160 * 120.33461 * 247.94710 * 11 10 5 13 13 C 1.38095 * 119.98338 * 179.97438 * 12 11 10 14 14 C 1.38920 * 120.67222 * 359.97438 * 13 12 11 15 15 C 1.36438 * 120.68840 * 0.02562 * 14 13 12 16 16 C 1.40752 * 119.98324 * 0.28446 * 15 14 13 17 17 C 1.40885 * 120.32570 * 179.72040 * 16 15 14 18 18 H 1.08005 * 119.99770 * 204.91668 * 17 16 15 19 19 C 1.40073 * 120.00122 * 24.91761 * 17 16 15 20 20 N 1.30772 * 120.00097 * 16.87881 * 19 17 16 21 21 Si 1.86803 * 120.00083 * 196.87601 * 19 17 16 22 22 H 1.48501 * 109.47003 * 89.99813 * 21 19 17 23 23 H 1.48493 * 109.47486 * 210.00177 * 21 19 17 24 24 H 1.48508 * 109.47032 * 330.00329 * 21 19 17 25 25 H 1.08999 * 109.47160 * 296.04774 * 1 2 3 26 26 H 1.09004 * 109.46631 * 56.04780 * 1 2 3 27 27 H 1.08997 * 109.46767 * 176.04623 * 1 2 3 28 28 H 1.09006 * 109.47184 * 189.27864 * 3 2 1 29 29 H 1.08999 * 109.47668 * 309.27731 * 3 2 1 30 30 H 1.09002 * 109.47511 * 69.28136 * 3 2 1 31 31 H 1.08998 * 109.47319 * 43.97860 * 4 2 1 32 32 H 1.08994 * 109.47255 * 283.97226 * 4 2 1 33 33 H 1.08001 * 119.92196 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.84878 * 179.74373 * 7 6 5 35 35 H 1.08003 * 119.92420 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.07775 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.00834 * 359.95240 * 12 11 10 38 38 H 1.08003 * 119.66249 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.65707 * 180.02562 * 14 13 12 40 40 H 1.08005 * 120.01053 * 180.02562 * 15 14 13 41 41 H 0.97006 * 119.99670 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4504 -1.0799 0.9017 6 6 4.0335 -0.7835 -0.3129 7 6 5.3677 -1.0767 -0.5333 8 6 6.1277 -1.6635 0.4637 9 6 5.5590 -1.9595 1.6847 10 6 4.2128 -1.6665 1.9137 11 6 3.5961 -1.9814 3.2203 12 6 3.9762 -1.2842 4.3631 13 6 3.3953 -1.5839 5.5796 14 6 2.4299 -2.5779 5.6781 15 6 2.0367 -3.2785 4.5754 16 6 2.6150 -3.0009 3.3225 17 6 2.2186 -3.7240 2.1802 18 1 2.8917 -3.8190 1.3408 19 6 0.9517 -4.3196 2.1330 20 7 0.0221 -3.9466 2.9737 21 14 0.5900 -5.6467 0.8690 22 1 0.9206 -6.9771 1.4398 23 1 -0.8498 -5.6069 0.5077 24 1 1.4118 -5.4109 -0.3452 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0726 1.3471 -0.1657 29 1 1.5184 1.9438 -0.7955 30 1 1.7863 1.8410 0.9612 31 1 1.4353 -1.6953 1.2403 32 1 1.8940 -0.1779 2.0497 33 1 3.4462 -0.3255 -1.0950 34 1 5.8182 -0.8463 -1.4874 35 1 7.1687 -1.8894 0.2852 36 1 6.1532 -2.4170 2.4619 37 1 4.7257 -0.5093 4.2988 38 1 3.6945 -1.0398 6.4633 39 1 1.9859 -2.7985 6.6377 40 1 1.2849 -4.0489 4.6645 41 1 -0.8554 -4.3588 2.9407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239684288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = 46.684250 kcal Electronic energy + Delta-G solvation = -22241.007558 eV Core-core repulsion = 19278.099560 eV Total energy + Delta-G solvation = -2962.907998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.14693 -37.21303 -36.38603 -33.75877 -31.83135 -30.68282 -29.57932 -28.14272 -27.21626 -26.17225 -25.14452 -22.36252 -21.98559 -20.86548 -20.12696 -19.39123 -17.30323 -16.16752 -15.37168 -15.08500 -14.83397 -14.76093 -14.21628 -13.96661 -13.61657 -13.49647 -13.20738 -12.65296 -12.34104 -12.17621 -12.03464 -11.85319 -11.71358 -11.43503 -11.28973 -11.23734 -11.14876 -10.90281 -10.90023 -10.51187 -10.34812 -10.12313 -9.70696 -9.40029 -9.20235 -8.06225 -7.99172 -7.75678 -7.45128 -7.27992 -6.82737 -4.41405 2.07706 2.17938 2.74319 2.97707 3.05069 3.10250 3.21106 3.89301 4.42176 4.52195 4.60002 5.49582 5.50695 5.57079 5.62108 5.69684 5.75756 5.81094 5.85247 5.96067 6.15826 6.18400 6.20663 6.25687 6.34087 6.37217 6.40897 6.59286 6.63120 6.82436 6.95833 6.99863 7.13042 7.17503 7.21669 7.28927 7.39501 7.53237 7.55592 7.70549 7.73311 7.90203 8.03123 8.07375 8.21918 8.57426 8.81255 8.90921 10.07653 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.008654 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.143078 B = 3234.863962 C = 3950.067938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.547 5.547 3 C 0.018 3.982 4 C 0.094 3.906 5 C -0.059 4.059 6 C -0.112 4.112 7 C -0.148 4.148 8 C -0.132 4.132 9 C -0.125 4.125 10 C 0.019 3.981 11 C -0.185 4.185 12 C -0.074 4.074 13 C -0.244 4.244 14 C -0.103 4.103 15 C -0.161 4.161 16 C 0.129 3.871 17 C -0.446 4.446 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.788 5.788 21 Si 0.900 3.100 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.259 1.259 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 4.767 -4.761 7.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.270 5.270 3 C -0.130 4.130 4 C -0.033 4.033 5 C -0.060 4.060 6 C -0.130 4.130 7 C -0.166 4.166 8 C -0.150 4.150 9 C -0.143 4.143 10 C 0.018 3.982 11 C -0.187 4.187 12 C -0.092 4.092 13 C -0.264 4.264 14 C -0.122 4.122 15 C -0.180 4.180 16 C 0.127 3.873 17 C -0.475 4.475 18 H 0.099 0.901 19 C -0.140 4.140 20 N -0.413 5.413 21 Si 0.724 3.276 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.182 1.182 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.079 4.502 -5.142 7.144 hybrid contribution -0.504 -0.226 0.312 0.635 sum 1.575 4.276 -4.830 6.640 Atomic orbital electron populations 1.22308 0.87643 1.02325 0.99671 1.61943 1.07490 1.13078 1.44539 1.22514 1.01426 0.89450 0.99655 1.21182 0.92946 0.99542 0.89580 1.19892 0.94813 0.97990 0.93301 1.21017 0.94292 1.00449 0.97216 1.20983 0.94777 1.02278 0.98554 1.20881 0.99012 1.01031 0.94114 1.21220 0.94980 1.01243 0.96850 1.18609 0.91873 0.94407 0.93289 1.18580 1.06837 1.02511 0.90755 1.20528 0.98187 0.98021 0.92452 1.20257 1.04943 1.04959 0.96206 1.20462 0.97399 0.97068 0.97264 1.21083 1.03172 1.02064 0.91680 1.17484 0.88654 0.88476 0.92709 1.19526 0.99153 1.27070 1.01753 0.90077 1.25920 0.95862 0.96002 0.96217 1.69801 1.03442 1.35151 1.32857 0.86409 0.78245 0.81379 0.81532 1.19254 1.20237 1.18224 0.95855 0.92132 0.91200 0.90940 0.92248 0.95994 0.86436 0.93894 0.85429 0.87481 0.87439 0.86933 0.89477 0.89608 0.89650 0.86297 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.53 60.07 0.57 1.02 16 2 N -0.55 -9.43 3.92 -252.72 -0.99 -10.42 16 3 C 0.02 0.27 8.87 60.06 0.53 0.80 16 4 C 0.09 1.92 4.12 -4.97 -0.02 1.90 16 5 C -0.06 -1.21 5.20 -104.21 -0.54 -1.75 16 6 C -0.11 -2.02 7.89 -39.64 -0.31 -2.34 16 7 C -0.15 -2.47 10.04 -39.47 -0.40 -2.86 16 8 C -0.13 -2.25 10.03 -39.64 -0.40 -2.65 16 9 C -0.12 -2.42 9.78 -39.17 -0.38 -2.81 16 10 C 0.02 0.40 4.27 -104.90 -0.45 -0.05 16 11 C -0.19 -4.33 4.51 -104.22 -0.47 -4.80 16 12 C -0.07 -1.65 9.76 -39.29 -0.38 -2.03 16 13 C -0.24 -5.41 10.03 -39.38 -0.40 -5.81 16 14 C -0.10 -2.38 9.96 -39.98 -0.40 -2.78 16 15 C -0.16 -4.01 8.64 -39.28 -0.34 -4.35 16 16 C 0.13 3.24 5.17 -106.56 -0.55 2.69 16 17 C -0.45 -11.09 6.08 -37.89 -0.23 -11.32 16 18 H 0.08 2.07 7.18 -52.48 -0.38 1.70 16 19 C 0.08 1.86 5.12 -17.32 -0.09 1.77 16 20 N -0.79 -19.00 10.92 55.55 0.61 -18.39 16 21 Si 0.90 18.30 29.59 -169.99 -5.03 13.27 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.07 1.07 5.93 -51.93 -0.31 0.77 16 29 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 30 H 0.02 0.33 8.01 -51.93 -0.42 -0.09 16 31 H 0.12 2.74 5.67 -51.93 -0.29 2.44 16 32 H 0.04 0.95 7.77 -51.93 -0.40 0.54 16 33 H 0.13 2.16 6.04 -52.49 -0.32 1.85 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.12 3.05 6.15 -52.48 -0.32 2.73 16 41 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -25.51 330.45 -10.47 -35.98 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.79 Total: 9.94 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -4.25 Total: -35.37 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: -0.38 Total: -28.81 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.51 -10.47 -35.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239684288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.666 kcal (2) G-P(sol) polarization free energy of solvation -25.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds