Wall clock time and date at job start Tue Mar 31 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31261 * 119.79774 * 2 1 4 4 C 1.33022 * 121.72422 * 180.02562 * 3 2 1 5 5 C 1.47968 * 119.45050 * 179.97438 * 4 3 2 6 6 C 1.39626 * 120.14353 * 231.19046 * 5 4 3 7 7 C 1.37922 * 119.84783 * 179.74780 * 6 5 4 8 8 C 1.38412 * 120.14546 * 0.53156 * 7 6 5 9 9 C 1.38358 * 120.29181 * 359.74376 * 8 7 6 10 10 C 1.37957 * 120.15138 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.07892 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46976 * 305.61487 * 11 10 9 13 13 C 1.53001 * 109.46891 * 65.61352 * 11 10 9 14 14 C 1.39895 * 121.10213 * 359.97438 * 4 3 2 15 15 C 1.36619 * 119.46219 * 0.02562 * 14 4 3 16 16 C 1.40947 * 119.79703 * 180.02562 * 2 1 3 17 17 C 1.41053 * 120.55813 * 0.24660 * 16 2 1 18 18 H 1.07999 * 119.99598 * 331.78489 * 17 16 2 19 19 C 1.40026 * 120.00133 * 151.77487 * 17 16 2 20 20 N 1.30789 * 120.00194 * 344.72984 * 19 17 16 21 21 Si 1.86796 * 119.99697 * 164.72690 * 19 17 16 22 22 H 1.48495 * 109.47306 * 60.00611 * 21 19 17 23 23 H 1.48508 * 109.47010 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47244 * 300.00066 * 21 19 17 25 25 H 1.08999 * 109.46898 * 269.97641 * 1 2 3 26 26 H 1.09002 * 109.47002 * 29.97605 * 1 2 3 27 27 H 1.08997 * 109.47184 * 149.97803 * 1 2 3 28 28 H 1.07995 * 120.07593 * 0.02562 * 6 5 4 29 29 H 1.07997 * 119.92558 * 180.27274 * 7 6 5 30 30 H 1.07999 * 119.85097 * 179.76409 * 8 7 6 31 31 H 1.08001 * 119.92426 * 179.97438 * 9 8 7 32 32 H 1.08996 * 109.47372 * 185.61586 * 11 10 9 33 33 H 1.08996 * 109.46989 * 59.99865 * 12 11 10 34 34 H 1.08999 * 109.46816 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.46875 * 299.99653 * 12 11 10 36 36 H 1.09005 * 109.47021 * 299.99743 * 13 11 10 37 37 H 1.08994 * 109.47523 * 60.00078 * 13 11 10 38 38 H 1.09001 * 109.47006 * 180.02562 * 13 11 10 39 39 H 1.07998 * 120.27323 * 180.02562 * 14 4 3 40 40 H 1.07997 * 120.78492 * 179.97438 * 15 14 4 41 41 H 0.96992 * 120.00247 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4888 1.1838 -0.0005 5 6 4.1726 2.4960 -0.0011 6 6 5.1673 2.7679 -0.9424 7 6 5.7971 3.9949 -0.9406 8 6 5.4526 4.9517 -0.0016 9 6 4.4718 4.6865 0.9374 10 6 3.8299 3.4653 0.9432 11 6 2.7614 3.1785 1.9664 12 6 3.3199 3.4239 3.3695 13 6 1.5641 4.1001 1.7255 14 6 4.2513 0.0109 -0.0005 15 6 3.6203 -1.2008 -0.0006 16 6 2.2074 -1.2231 -0.0005 17 6 1.5097 -2.4490 -0.0063 18 1 0.5247 -2.5117 0.4321 19 6 2.0942 -3.5845 -0.5806 20 7 3.1329 -3.4595 -1.3655 21 14 1.3903 -5.2780 -0.2256 22 1 -0.0221 -5.3324 -0.6808 23 1 2.1835 -6.3051 -0.9476 24 1 1.4504 -5.5429 1.2344 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 5.4399 2.0207 -1.6730 29 1 6.5636 4.2081 -1.6709 30 1 5.9515 5.9095 -0.0022 31 1 4.2080 5.4372 1.6677 32 1 2.4437 2.1395 1.8785 33 1 3.6376 4.4628 3.4575 34 1 2.5469 3.2169 4.1096 35 1 4.1729 2.7673 3.5410 36 1 1.8819 5.1391 1.8136 37 1 1.1663 3.9253 0.7260 38 1 0.7914 3.8929 2.4659 39 1 5.3300 0.0628 -0.0005 40 1 4.1878 -2.1196 -0.0010 41 1 3.5379 -4.2460 -1.7630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239865351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:40 Heat of formation + Delta-G solvation = 24.935344 kcal Electronic energy + Delta-G solvation = -21583.550155 eV Core-core repulsion = 18619.699053 eV Total energy + Delta-G solvation = -2963.851101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44950 -38.02455 -34.88230 -34.22996 -32.27160 -30.89480 -29.74141 -29.14649 -26.94348 -26.72746 -25.10622 -22.92567 -22.46592 -20.72288 -20.06100 -19.36645 -17.41570 -16.42478 -15.55561 -15.20496 -14.80997 -14.47991 -13.96795 -13.62339 -13.42191 -13.20019 -13.11056 -12.97334 -12.52833 -12.07152 -11.97815 -11.78668 -11.67357 -11.63615 -11.50307 -11.32259 -11.13112 -10.95489 -10.85163 -10.70531 -10.56232 -10.13531 -10.07349 -9.79238 -9.44964 -8.48625 -8.24304 -8.17966 -7.96630 -7.31724 -6.94492 -4.54239 1.73412 1.89143 2.60639 2.92071 2.96294 2.98520 3.12707 3.77319 4.24052 4.52518 5.17337 5.24209 5.34554 5.40330 5.50048 5.59312 5.66903 5.79160 5.91496 5.97247 6.00920 6.07837 6.16381 6.28334 6.31924 6.38410 6.42353 6.52660 6.59259 6.63763 6.68423 6.73506 6.79016 6.87235 6.88670 6.95120 6.99145 7.11660 7.30708 7.34900 7.45569 7.71066 7.81196 7.88956 8.33918 8.56961 8.64971 9.57574 9.96159 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.004839 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.965733 B = 5784.433576 C = 6458.500263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.005 3.995 3 N -0.440 5.440 4 C 0.006 3.994 5 C 0.018 3.982 6 C -0.118 4.118 7 C -0.128 4.128 8 C -0.140 4.140 9 C -0.120 4.120 10 C -0.061 4.061 11 C -0.059 4.059 12 C -0.142 4.142 13 C -0.130 4.130 14 C -0.128 4.128 15 C -0.137 4.137 16 C 0.075 3.925 17 C -0.441 4.441 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.785 5.785 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 7.730 3.530 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.139 4.139 3 N -0.149 5.149 4 C -0.129 4.129 5 C 0.017 3.983 6 C -0.137 4.137 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.138 4.138 10 C -0.061 4.061 11 C -0.077 4.077 12 C -0.199 4.199 13 C -0.188 4.188 14 C -0.148 4.148 15 C -0.162 4.162 16 C 0.071 3.929 17 C -0.470 4.470 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.409 5.409 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.186 1.186 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.308 8.351 3.368 9.099 hybrid contribution 0.489 -1.662 -0.079 1.735 sum 1.797 6.689 3.289 7.667 Atomic orbital electron populations 1.20243 0.91099 1.01184 1.00258 1.21018 0.95089 0.88075 1.09709 1.66908 1.08238 1.30097 1.09624 1.18707 0.89162 0.90449 1.14590 1.18577 0.93908 0.92350 0.93464 1.21244 0.97064 0.96795 0.98567 1.20916 1.00418 0.94014 0.99231 1.20970 0.99087 0.99016 0.96774 1.20809 0.97222 0.96595 0.99178 1.19922 0.96878 0.93124 0.96208 1.20162 0.93142 1.02602 0.91811 1.21874 1.00662 1.00913 0.96469 1.21700 0.97088 0.97901 1.02085 1.21232 0.98395 0.93355 1.01832 1.21237 0.94747 0.96387 1.03795 1.18376 0.92381 0.93203 0.88986 1.19567 1.02988 0.92633 1.31834 0.89572 1.26025 0.94161 1.01739 0.92661 1.69763 1.18174 1.32793 1.20130 0.86280 0.80020 0.80118 0.79941 1.18687 1.20181 1.18612 0.93431 0.93254 0.91525 0.86441 0.86883 0.87085 0.86903 0.88339 0.93226 0.92967 0.93000 0.93810 0.92017 0.93265 0.88503 0.85994 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.59 36.01 0.35 -1.09 16 2 C 0.01 0.13 6.86 -81.81 -0.56 -0.43 16 3 N -0.44 -10.39 8.25 -5.39 -0.04 -10.43 16 4 C 0.01 0.14 5.42 -82.74 -0.45 -0.31 16 5 C 0.02 0.36 5.57 -104.89 -0.58 -0.23 16 6 C -0.12 -2.12 9.52 -39.18 -0.37 -2.50 16 7 C -0.13 -1.96 10.03 -39.63 -0.40 -2.35 16 8 C -0.14 -2.04 10.04 -39.47 -0.40 -2.44 16 9 C -0.12 -1.86 8.75 -39.64 -0.35 -2.21 16 10 C -0.06 -1.09 4.81 -104.22 -0.50 -1.59 16 11 C -0.06 -1.01 2.68 -91.77 -0.25 -1.26 16 12 C -0.14 -2.07 8.94 37.16 0.33 -1.73 16 13 C -0.13 -2.02 9.06 37.16 0.34 -1.68 16 14 C -0.13 -2.97 9.47 -39.55 -0.37 -3.34 16 15 C -0.14 -3.41 8.70 -39.00 -0.34 -3.75 16 16 C 0.08 1.91 5.55 -106.64 -0.59 1.32 16 17 C -0.44 -10.84 8.06 -37.85 -0.31 -11.14 16 18 H 0.09 2.00 6.97 -52.49 -0.37 1.63 16 19 C 0.07 1.73 5.19 -17.33 -0.09 1.64 16 20 N -0.78 -19.15 11.08 55.55 0.62 -18.53 16 21 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.34 6.81 -51.93 -0.35 0.99 16 28 H 0.12 2.07 8.05 -52.49 -0.42 1.65 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.11 1.51 7.10 -52.49 -0.37 1.13 16 32 H 0.10 2.02 5.38 -51.93 -0.28 1.74 16 33 H 0.05 0.63 7.10 -51.93 -0.37 0.27 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.59 7.74 -51.93 -0.40 0.19 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 2.04 8.04 -52.49 -0.42 1.62 16 40 H 0.12 3.10 6.44 -52.49 -0.34 2.76 16 41 H 0.29 6.34 8.29 -40.82 -0.34 6.01 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -26.33 335.37 -9.79 -36.11 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.84 Total: 8.46 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -4.54 Total: -33.10 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.57 Total: -28.97 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.33 -9.79 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239865351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.049 kcal (2) G-P(sol) polarization free energy of solvation -26.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds