Wall clock time and date at job start Tue Mar 31 2020 05:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38867 * 119.24693 * 2 1 4 4 C 1.36882 * 119.80055 * 179.97438 * 3 2 1 5 5 C 1.41122 * 118.39231 * 0.02562 * 4 3 2 6 6 C 1.40886 * 120.71674 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99547 * 208.09537 * 6 5 4 8 8 C 1.40065 * 120.00283 * 28.10319 * 6 5 4 9 9 N 1.30772 * 119.99823 * 10.98457 * 8 6 5 10 10 Si 1.86801 * 120.00325 * 190.98898 * 8 6 5 11 11 H 1.48502 * 109.47328 * 89.99642 * 10 8 6 12 12 H 1.48503 * 109.47183 * 209.99794 * 10 8 6 13 13 H 1.48506 * 109.46904 * 329.99611 * 10 8 6 14 14 C 1.41866 * 118.56199 * 359.97438 * 5 4 3 15 15 C 1.47827 * 119.99085 * 180.02562 * 14 5 4 16 16 C 1.39686 * 120.15022 * 56.31195 * 15 14 5 17 17 C 1.37901 * 119.84387 * 179.97438 * 16 15 14 18 18 C 1.38418 * 120.15350 * 0.02562 * 17 16 15 19 19 C 1.38378 * 120.30714 * 0.02562 * 18 17 16 20 20 C 1.37946 * 120.14821 * 359.74363 * 19 18 17 21 21 C 1.50703 * 120.07421 * 180.27859 * 20 19 18 22 22 C 1.52993 * 109.47016 * 298.88220 * 21 20 19 23 23 C 1.52997 * 109.47102 * 58.88603 * 21 20 19 24 24 N 1.31742 * 119.24443 * 179.72709 * 2 1 3 25 25 H 1.08997 * 109.47755 * 90.00108 * 1 2 3 26 26 H 1.09007 * 109.47056 * 329.99830 * 1 2 3 27 27 H 1.09002 * 109.46995 * 210.00280 * 1 2 3 28 28 H 1.08005 * 120.09688 * 359.97438 * 3 2 1 29 29 H 1.07995 * 120.80218 * 180.02562 * 4 3 2 30 30 H 0.97010 * 120.00190 * 180.02562 * 9 8 6 31 31 H 1.08002 * 120.08037 * 359.96095 * 16 15 14 32 32 H 1.08006 * 119.91911 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.84648 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.92537 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.46783 * 178.88593 * 21 20 19 36 36 H 1.09000 * 109.47234 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.47511 * 300.00767 * 22 21 20 38 38 H 1.09005 * 109.47404 * 60.00136 * 22 21 20 39 39 H 1.09000 * 109.47067 * 60.00083 * 23 21 20 40 40 H 1.09000 * 109.46679 * 180.02562 * 23 21 20 41 41 H 1.08996 * 109.47352 * 299.99740 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5542 1.2249 0.0005 5 6 4.2372 -0.0101 0.0005 6 6 5.6454 -0.0536 0.0016 7 1 6.1600 -0.8949 -0.4389 8 6 6.3781 0.9940 0.5740 9 7 5.7694 1.9011 1.2929 10 14 8.2246 1.0954 0.3105 11 1 8.5075 1.8947 -0.9087 12 1 8.8575 1.7453 1.4863 13 1 8.7769 -0.2731 0.1444 14 6 3.4752 -1.2066 0.0005 15 6 4.1581 -2.5177 0.0011 16 6 5.0761 -2.8301 1.0065 17 6 5.7092 -4.0552 1.0012 18 6 5.4373 -4.9741 0.0023 19 6 4.5298 -4.6707 -0.9974 20 6 3.8858 -3.4509 -1.0016 21 6 2.8931 -3.1247 -2.0876 22 6 3.5965 -3.1508 -3.4460 23 6 1.7666 -4.1598 -2.0765 24 7 2.1506 -1.1495 0.0055 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6348 2.1408 -0.0004 29 1 4.0983 2.1578 0.0010 30 1 6.2768 2.6268 1.6891 31 1 5.2897 -2.1139 1.7861 32 1 6.4195 -4.2979 1.7778 33 1 5.9362 -5.9319 0.0027 34 1 4.3226 -5.3921 -1.7739 35 1 2.4767 -2.1325 -1.9131 36 1 2.8787 -2.9145 -4.2315 37 1 4.3992 -2.4134 -3.4539 38 1 4.0131 -4.1429 -3.6205 39 1 1.2655 -4.1411 -1.1087 40 1 1.0489 -3.9241 -2.8623 41 1 2.1830 -5.1519 -2.2510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239865649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:46 Heat of formation + Delta-G solvation = 26.145479 kcal Electronic energy + Delta-G solvation = -22072.335692 eV Core-core repulsion = 19108.537066 eV Total energy + Delta-G solvation = -2963.798626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.35206 -37.89166 -34.80882 -34.24677 -32.19643 -30.82662 -29.44730 -28.85964 -27.70903 -26.67185 -24.43423 -22.76006 -22.57175 -20.75827 -20.07846 -19.19312 -17.37663 -16.19293 -15.61532 -14.99244 -14.78298 -14.29749 -13.99867 -13.49386 -13.34729 -13.10883 -13.04884 -12.94795 -12.53233 -12.04152 -11.90393 -11.80200 -11.65178 -11.51199 -11.44740 -11.32156 -11.18389 -10.97389 -10.69324 -10.62694 -10.58590 -10.08336 -9.97092 -9.71505 -9.43041 -8.42873 -8.08277 -8.02891 -7.90364 -7.31987 -6.86940 -4.51776 1.94725 2.14055 2.59735 2.93968 2.99240 3.03259 3.13485 3.81290 4.46990 4.55139 5.29341 5.35584 5.42922 5.51457 5.63395 5.73967 5.78051 5.90038 6.01408 6.04260 6.07376 6.12263 6.21275 6.27557 6.34749 6.39640 6.41874 6.48362 6.51628 6.72091 6.74986 6.77784 6.79428 6.91303 6.96974 7.07195 7.08944 7.17736 7.32473 7.55202 7.65369 7.71407 7.88555 7.92682 8.38540 8.60698 8.67290 9.57032 10.00389 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.008352 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.921783 B = 3351.617522 C = 4790.372408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.011 4.011 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.083 3.917 6 C -0.436 4.436 7 H 0.085 0.915 8 C 0.073 3.927 9 N -0.792 5.792 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.276 1.276 13 H -0.258 1.258 14 C 0.022 3.978 15 C 0.029 3.971 16 C -0.090 4.090 17 C -0.134 4.134 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.066 4.066 21 C -0.059 4.059 22 C -0.140 4.140 23 C -0.132 4.132 24 N -0.444 5.444 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.284 0.716 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 -5.827 -3.379 6.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C -0.165 4.165 4 C -0.153 4.153 5 C 0.078 3.922 6 C -0.465 4.465 7 H 0.103 0.897 8 C -0.145 4.145 9 N -0.417 5.417 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.201 1.201 13 H -0.182 1.182 14 C -0.117 4.117 15 C 0.028 3.972 16 C -0.109 4.109 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.077 4.077 22 C -0.198 4.198 23 C -0.189 4.189 24 N -0.153 5.153 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.716 -6.362 -3.219 7.334 hybrid contribution 1.463 1.089 0.072 1.825 sum -0.254 -5.273 -3.147 6.146 Atomic orbital electron populations 1.20276 0.91629 1.00847 1.00341 1.20257 0.94785 0.88604 1.11531 1.21249 0.95464 0.97093 1.02691 1.21449 0.92550 0.98971 1.02304 1.18332 0.94091 0.90724 0.89031 1.19545 0.91004 1.04365 1.31626 0.89704 1.25984 1.01547 0.94196 0.92800 1.69743 1.38663 1.10676 1.22573 0.86252 0.81512 0.79970 0.78873 1.19152 1.20096 1.18192 1.19430 0.88339 0.91240 1.12680 1.18327 0.94285 0.91497 0.93065 1.21277 0.95675 0.95735 0.98207 1.20921 1.00781 0.94433 0.99099 1.20936 0.99706 0.99062 0.95997 1.20711 0.98147 0.96568 0.98914 1.19901 0.97339 0.93497 0.95922 1.20141 0.93872 1.01544 0.92172 1.21842 1.00294 1.01282 0.96363 1.21733 0.97761 0.97863 1.01585 1.66908 1.09465 1.28998 1.09907 0.93246 0.93016 0.92640 0.88481 0.85403 0.90538 0.85885 0.87057 0.87344 0.87194 0.88593 0.93196 0.92694 0.93256 0.92393 0.93373 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.94 16 2 C -0.01 -0.24 6.79 -82.40 -0.56 -0.80 16 3 C -0.14 -3.29 9.64 -39.84 -0.38 -3.67 16 4 C -0.13 -3.16 8.72 -38.98 -0.34 -3.50 16 5 C 0.08 2.11 5.57 -106.41 -0.59 1.52 16 6 C -0.44 -10.89 7.49 -37.90 -0.28 -11.17 16 7 H 0.08 2.12 6.94 -52.48 -0.36 1.75 16 8 C 0.07 1.74 5.27 -17.32 -0.09 1.65 16 9 N -0.79 -19.30 10.85 55.55 0.60 -18.70 16 10 Si 0.91 18.02 29.57 -169.99 -5.03 12.99 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 13 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 14 C 0.02 0.52 5.33 -82.24 -0.44 0.09 16 15 C 0.03 0.64 4.86 -104.91 -0.51 0.13 16 16 C -0.09 -1.88 8.30 -39.16 -0.33 -2.21 16 17 C -0.13 -2.38 10.03 -39.64 -0.40 -2.78 16 18 C -0.14 -2.28 10.04 -39.46 -0.40 -2.68 16 19 C -0.13 -2.15 8.71 -39.64 -0.35 -2.50 16 20 C -0.07 -1.29 4.82 -104.20 -0.50 -1.79 16 21 C -0.06 -1.07 2.83 -91.77 -0.26 -1.33 16 22 C -0.14 -2.23 9.02 37.15 0.34 -1.90 16 23 C -0.13 -2.07 8.99 37.16 0.33 -1.73 16 24 N -0.44 -10.52 8.53 -5.44 -0.05 -10.57 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.82 8.07 -51.92 -0.42 0.40 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.13 3.24 6.28 -52.49 -0.33 2.91 16 30 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 31 H 0.12 2.69 7.78 -52.49 -0.41 2.28 16 32 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.62 7.10 -52.49 -0.37 1.25 16 35 H 0.10 2.03 5.38 -51.93 -0.28 1.75 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.64 7.33 -51.93 -0.38 0.26 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -26.42 334.49 -9.70 -36.12 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.88 Total: 8.74 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -4.39 Total: -33.62 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.56 Total: -29.27 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.42 -9.70 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239865649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.264 kcal (2) G-P(sol) polarization free energy of solvation -26.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds