Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 C 1.38387 * 119.85408 * 269.73000 * 3 2 1 5 5 C 1.50696 * 119.92672 * 0.02562 * 4 3 2 6 6 C 1.37942 * 120.14236 * 179.72721 * 4 3 2 7 7 C 1.39607 * 119.85068 * 0.51854 * 6 4 3 8 8 C 1.47962 * 120.14243 * 179.77003 * 7 6 4 9 9 C 1.39895 * 119.45208 * 359.97438 * 8 7 6 10 10 C 1.36606 * 119.47091 * 179.97438 * 9 8 7 11 11 C 1.41307 * 118.41152 * 359.97438 * 10 9 8 12 12 C 1.41046 * 120.55315 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00132 * 155.68586 * 12 11 10 14 14 C 1.40037 * 120.00250 * 335.68529 * 12 11 10 15 15 N 1.30781 * 119.99723 * 343.28413 * 14 12 11 16 16 Si 1.86796 * 119.99854 * 163.28521 * 14 12 11 17 17 H 1.48493 * 109.47472 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46814 * 120.00256 * 16 14 12 19 19 H 1.48499 * 109.47141 * 239.99670 * 16 14 12 20 20 C 1.40948 * 118.89020 * 0.02562 * 11 10 9 21 21 N 1.31261 * 120.40441 * 359.72521 * 20 11 10 22 22 C 1.39602 * 119.71243 * 359.75769 * 7 6 4 23 23 C 1.37934 * 119.85595 * 359.97438 * 22 7 6 24 24 C 1.50698 * 119.93265 * 180.02562 * 23 22 7 25 25 H 1.09003 * 109.47657 * 59.99739 * 1 2 3 26 26 H 1.09002 * 109.46936 * 299.99340 * 1 2 3 27 27 H 1.09005 * 109.47722 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47183 * 120.00727 * 2 1 3 29 29 H 1.09002 * 109.46578 * 240.00252 * 2 1 3 30 30 H 1.09001 * 109.47429 * 90.00032 * 5 4 3 31 31 H 1.09003 * 109.47090 * 210.00159 * 5 4 3 32 32 H 1.09004 * 109.47225 * 329.99290 * 5 4 3 33 33 H 1.07996 * 120.06942 * 180.25102 * 6 4 3 34 34 H 1.07999 * 120.26266 * 0.02562 * 9 8 7 35 35 H 1.07999 * 120.79393 * 180.02562 * 10 9 8 36 36 H 0.96998 * 120.00471 * 179.97438 * 15 14 12 37 37 H 1.08007 * 119.79776 * 180.02562 * 20 11 10 38 38 H 1.08005 * 120.07556 * 179.97438 * 22 7 6 39 39 H 1.09008 * 109.47019 * 269.98398 * 24 23 22 40 40 H 1.09007 * 109.46966 * 29.97786 * 24 23 22 41 41 H 1.08998 * 109.47392 * 149.98017 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2673 2.0684 -1.2002 5 6 2.0197 1.3515 -2.5024 6 6 2.7218 3.3708 -1.2072 7 6 2.9550 4.0318 0.0001 8 6 3.4473 5.4271 0.0002 9 6 3.6768 6.0756 -1.2180 10 6 4.1309 7.3640 -1.2184 11 6 4.3531 7.9990 0.0243 12 6 4.8221 9.3282 0.0766 13 1 4.6268 9.9358 0.9479 14 6 5.5408 9.8600 -1.0011 15 7 6.0596 9.0624 -1.8984 16 14 5.7586 11.7087 -1.1571 17 1 5.0814 12.3845 -0.0215 18 1 7.2062 12.0399 -1.1377 19 1 5.1622 12.1712 -2.4360 20 6 4.0994 7.2815 1.2106 21 7 3.6588 6.0461 1.1585 22 6 2.7214 3.3708 1.2073 23 6 2.2616 2.0703 1.2003 24 6 2.0083 1.3553 2.5024 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5137 0.8901 27 1 -0.3635 -1.0277 0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 0.9912 1.5215 -2.8210 31 1 2.7029 1.7314 -3.2620 32 1 2.1860 0.2828 -2.3661 33 1 2.9009 3.8764 -2.1445 34 1 3.4956 5.5621 -2.1506 35 1 4.3148 7.8852 -2.1463 36 1 6.5571 9.4307 -2.6452 37 1 4.2638 7.7527 2.1685 38 1 2.9002 3.8765 2.1448 39 1 2.9162 0.8401 2.8166 40 1 1.7193 2.0794 3.2643 41 1 1.2064 0.6293 2.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240738650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = 19.622390 kcal Electronic energy + Delta-G solvation = -20797.709997 eV Core-core repulsion = 17833.628509 eV Total energy + Delta-G solvation = -2964.081488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.53559 -38.18602 -34.69641 -33.76664 -33.25961 -30.93689 -30.72705 -29.07205 -27.05109 -26.26075 -25.60447 -23.33703 -21.82090 -21.47529 -19.96787 -19.41877 -17.51570 -16.00878 -15.93854 -15.31985 -14.97912 -14.40940 -14.05591 -13.86908 -13.32676 -13.24251 -13.06519 -12.96776 -12.61344 -12.56827 -12.39633 -12.23151 -12.04465 -11.73591 -11.63532 -11.58004 -11.38275 -11.16146 -10.96684 -10.91267 -10.68580 -10.33929 -10.21883 -9.89120 -9.53668 -8.47050 -8.35368 -8.08539 -8.04328 -7.24546 -6.98173 -4.57330 1.59491 1.94178 2.64912 2.91973 2.94582 2.99099 3.14006 3.72429 4.18041 4.62671 4.97710 5.06630 5.22405 5.25846 5.34833 5.45488 5.59095 5.62450 5.69094 5.74124 5.76733 5.84741 5.86964 5.93029 6.02312 6.03044 6.07194 6.14232 6.27840 6.30854 6.48047 6.59701 6.68697 6.76446 6.83166 6.89750 7.04085 7.14287 7.17357 7.34761 7.53280 7.71397 7.77757 7.87496 8.30162 8.49608 8.59720 9.54587 9.86622 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035593 B = 0.003490 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.488232 B = 8020.962769 C = 8631.141709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.114 4.114 4 C -0.081 4.081 5 C -0.111 4.111 6 C -0.136 4.136 7 C 0.023 3.977 8 C -0.006 4.006 9 C -0.122 4.122 10 C -0.144 4.144 11 C 0.068 3.932 12 C -0.434 4.434 13 H 0.087 0.913 14 C 0.071 3.929 15 N -0.777 5.777 16 Si 0.916 3.084 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.269 1.269 20 C -0.017 4.017 21 N -0.448 5.448 22 C -0.114 4.114 23 C -0.083 4.083 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.286 0.714 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 -10.940 -0.231 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.081 4.081 5 C -0.168 4.168 6 C -0.155 4.155 7 C 0.022 3.978 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.169 4.169 11 C 0.064 3.936 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.149 4.149 15 N -0.400 5.400 16 Si 0.739 3.261 17 H -0.180 1.180 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.182 4.182 21 N -0.155 5.155 22 C -0.133 4.133 23 C -0.083 4.083 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.977 -11.395 0.301 12.871 hybrid contribution 0.511 1.487 -1.044 1.888 sum -5.466 -9.908 -0.743 11.340 Atomic orbital electron populations 1.21727 0.95406 1.00875 1.02199 1.20497 0.95689 0.93578 1.02119 1.19356 1.03965 0.95955 0.92189 1.19457 1.00112 0.94218 0.94302 1.20793 1.01559 0.99868 0.94569 1.21005 1.02814 0.94104 0.97598 1.18632 0.94745 0.91946 0.92461 1.18804 1.12615 0.93534 0.89071 1.21315 1.00030 0.95989 0.96853 1.21333 1.02184 0.94486 0.98890 1.18621 0.89240 0.93622 0.92147 1.19713 1.27721 0.96797 1.02058 0.89474 1.26095 0.93242 1.01158 0.94420 1.69783 1.22638 1.37604 1.10006 0.86124 0.78976 0.81286 0.79691 1.18021 1.19644 1.19416 1.22461 1.08179 0.90527 0.97073 1.66916 1.09157 1.10644 1.28815 1.21092 1.00369 0.93437 0.98426 1.19580 1.00041 0.94461 0.94255 1.20783 1.01389 0.99975 0.94652 0.92686 0.92664 0.93051 0.91549 0.91332 0.91762 0.92005 0.91678 0.86396 0.88114 0.85551 0.90257 0.85349 0.85569 0.91782 0.91876 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.75 37.16 0.36 -1.13 16 2 C -0.08 -0.94 4.96 -27.88 -0.14 -1.08 16 3 C -0.11 -1.73 5.14 -104.51 -0.54 -2.26 16 4 C -0.08 -1.28 5.87 -104.68 -0.61 -1.89 16 5 C -0.11 -1.36 9.59 36.00 0.35 -1.01 16 6 C -0.14 -2.51 9.07 -39.18 -0.36 -2.87 16 7 C 0.02 0.48 5.88 -104.89 -0.62 -0.13 16 8 C -0.01 -0.15 6.74 -82.75 -0.56 -0.71 16 9 C -0.12 -2.88 9.38 -39.55 -0.37 -3.25 16 10 C -0.14 -3.65 8.74 -39.01 -0.34 -3.99 16 11 C 0.07 1.77 5.59 -106.64 -0.60 1.17 16 12 C -0.43 -10.80 9.07 -37.84 -0.34 -11.15 16 13 H 0.09 2.05 7.90 -52.48 -0.41 1.63 16 14 C 0.07 1.67 5.19 -17.32 -0.09 1.58 16 15 N -0.78 -18.85 10.91 55.55 0.61 -18.24 16 16 Si 0.92 17.33 29.59 -169.99 -5.03 12.30 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 18 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 C -0.02 -0.43 10.97 -16.77 -0.18 -0.61 16 21 N -0.45 -11.15 9.39 -9.10 -0.09 -11.23 16 22 C -0.11 -2.21 9.22 -39.18 -0.36 -2.58 16 23 C -0.08 -1.35 5.87 -104.68 -0.61 -1.97 16 24 C -0.11 -1.42 9.18 36.00 0.33 -1.09 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 29 H 0.07 0.72 5.92 -51.93 -0.31 0.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.06 0.69 5.93 -51.93 -0.31 0.38 16 33 H 0.12 2.07 6.15 -52.49 -0.32 1.75 16 34 H 0.10 2.11 6.15 -52.49 -0.32 1.79 16 35 H 0.13 3.23 6.20 -52.49 -0.33 2.90 16 36 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 37 H 0.13 2.93 8.06 -52.48 -0.42 2.51 16 38 H 0.13 2.51 7.52 -52.48 -0.39 2.12 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.06 0.70 5.83 -51.93 -0.30 0.40 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -27.31 332.19 -9.70 -37.02 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.52 Total: 8.13 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -4.68 Total: -32.98 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.52 Total: -29.47 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.31 -9.70 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240738650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.638 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds