Wall clock time and date at job start Tue Mar 31 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46967 * 2 1 4 4 C 1.38333 * 119.87984 * 89.99385 * 3 2 1 5 5 C 1.50706 * 119.93108 * 0.04535 * 4 3 2 6 6 C 1.38001 * 120.12776 * 180.02562 * 4 3 2 7 7 C 1.39387 * 119.87382 * 0.02562 * 6 4 3 8 8 C 1.48310 * 120.12264 * 179.97438 * 7 6 4 9 9 C 1.39905 * 119.60349 * 179.97438 * 8 7 6 10 10 C 1.38696 * 119.46013 * 179.97438 * 9 8 7 11 11 C 1.38294 * 118.68974 * 0.28633 * 10 9 8 12 12 C 1.40687 * 119.18354 * 359.45244 * 11 10 9 13 13 C 1.41386 * 119.76263 * 180.27504 * 12 11 10 14 14 H 1.07998 * 119.99712 * 0.27585 * 13 12 11 15 15 C 1.40017 * 119.99878 * 180.27304 * 13 12 11 16 16 N 1.30752 * 119.99854 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00024 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47172 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47375 * 120.00199 * 17 15 13 20 20 H 1.48500 * 109.47474 * 240.00273 * 17 15 13 21 21 N 1.32217 * 119.61079 * 359.97438 * 8 7 6 22 22 C 1.39387 * 119.74759 * 0.24301 * 7 6 4 23 23 C 1.38003 * 119.87196 * 359.49914 * 22 7 6 24 24 C 1.50698 * 119.93312 * 180.24797 * 23 22 7 25 25 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47725 * 300.00780 * 1 2 3 27 27 H 1.09000 * 109.46987 * 60.00567 * 1 2 3 28 28 H 1.08994 * 109.47289 * 239.99380 * 2 1 3 29 29 H 1.09000 * 109.46987 * 119.99433 * 2 1 3 30 30 H 1.08994 * 109.46805 * 269.97364 * 5 4 3 31 31 H 1.09000 * 109.47233 * 29.97614 * 5 4 3 32 32 H 1.09001 * 109.46499 * 149.97459 * 5 4 3 33 33 H 1.08006 * 120.06042 * 179.97438 * 6 4 3 34 34 H 1.07991 * 120.26944 * 359.96141 * 9 8 7 35 35 H 1.08002 * 120.65058 * 180.02562 * 10 9 8 36 36 H 1.07996 * 120.40182 * 179.69925 * 11 10 9 37 37 H 0.96994 * 119.99513 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.05666 * 179.72609 * 22 7 6 39 39 H 1.09007 * 109.47657 * 270.25682 * 24 23 22 40 40 H 1.09001 * 109.47475 * 30.25752 * 24 23 22 41 41 H 1.09000 * 109.46958 * 150.25625 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0706 1.1994 5 6 2.0101 1.3558 2.5021 6 6 2.7213 3.3719 1.2054 7 6 2.9536 4.0317 -0.0002 8 6 3.4468 5.4304 -0.0002 9 6 3.6768 6.0821 -1.2167 10 6 4.1375 7.3903 -1.2132 11 6 4.3624 8.0118 0.0016 12 6 4.1071 7.3054 1.1911 13 6 4.3272 7.9309 2.4399 14 1 4.6858 8.9489 2.4781 15 6 4.0801 7.2306 3.6269 16 7 3.6464 5.9980 3.5805 17 14 4.3702 8.0572 5.2766 18 1 4.8573 9.4428 5.0572 19 1 3.0980 8.0956 6.0416 20 1 5.3855 7.2907 6.0427 21 7 3.6640 6.0466 1.1492 22 6 2.7151 3.3739 -1.2058 23 6 2.2608 2.0708 -1.1996 24 6 2.0079 1.3564 -2.5021 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.9805 1.5258 2.8166 31 1 2.1775 0.2871 2.3684 32 1 2.6904 1.7378 3.2634 33 1 2.8998 3.8783 2.1425 34 1 3.4972 5.5707 -2.1507 35 1 4.3211 7.9118 -2.1410 36 1 4.7257 9.0282 0.0365 37 1 3.4756 5.5128 4.4028 38 1 2.8892 3.8819 -2.1428 39 1 0.9778 1.5263 -2.8158 40 1 2.6873 1.7385 -3.2640 41 1 2.1756 0.2877 -2.3689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240738659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:18 Heat of formation + Delta-G solvation = 33.986590 kcal Electronic energy + Delta-G solvation = -21314.955193 eV Core-core repulsion = 18351.496583 eV Total energy + Delta-G solvation = -2963.458610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49788 -37.99053 -34.40562 -33.45155 -33.17769 -31.04423 -30.40991 -28.80972 -26.90416 -26.37880 -25.41298 -23.69452 -21.53798 -21.41722 -19.97139 -19.19389 -17.41753 -15.92897 -15.60878 -15.21828 -14.56864 -14.39393 -14.00440 -13.92261 -13.20770 -13.17891 -13.00724 -12.95806 -12.56453 -12.39637 -12.33901 -12.19082 -12.00001 -11.66447 -11.53630 -11.33083 -11.05012 -10.87794 -10.83686 -10.72493 -10.53184 -10.21513 -10.20704 -9.84303 -9.43704 -8.60240 -8.02324 -7.95146 -7.61963 -7.12039 -6.43793 -4.54076 1.61473 2.01251 2.80015 3.07284 3.08201 3.12166 3.19777 3.93126 4.32934 4.83397 4.98840 5.08979 5.23644 5.30451 5.41602 5.46444 5.66106 5.67205 5.79461 5.84481 5.89346 5.91299 5.93504 6.01962 6.05243 6.06901 6.12035 6.24082 6.34415 6.39262 6.49435 6.63326 6.66944 6.77412 6.89024 6.97952 7.11682 7.24330 7.35592 7.38905 7.59553 7.69576 7.74110 8.02219 8.21410 8.64718 8.89920 10.04361 10.28626 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.005261 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.452041 B = 5320.687857 C = 6755.860476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.094 4.094 4 C -0.097 4.097 5 C -0.110 4.110 6 C -0.080 4.080 7 C -0.017 4.017 8 C 0.176 3.824 9 C -0.300 4.300 10 C -0.060 4.060 11 C -0.273 4.273 12 C 0.256 3.744 13 C -0.432 4.432 14 H 0.084 0.916 15 C 0.071 3.929 16 N -0.718 5.718 17 Si 0.907 3.093 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.273 1.273 21 N -0.467 5.467 22 C -0.113 4.113 23 C -0.098 4.098 24 C -0.109 4.109 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.271 0.729 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -10.147 -4.054 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.097 4.097 5 C -0.167 4.167 6 C -0.099 4.099 7 C -0.018 4.018 8 C 0.032 3.968 9 C -0.324 4.324 10 C -0.084 4.084 11 C -0.296 4.296 12 C 0.131 3.869 13 C -0.463 4.463 14 H 0.102 0.898 15 C -0.154 4.154 16 N -0.339 5.339 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.198 1.198 21 N -0.180 5.180 22 C -0.132 4.132 23 C -0.098 4.098 24 C -0.166 4.166 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.171 0.829 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.219 -10.709 -3.094 11.919 hybrid contribution 0.336 1.028 -0.193 1.099 sum -3.883 -9.681 -3.287 10.936 Atomic orbital electron populations 1.21694 0.95230 1.00915 1.02247 1.20576 0.95853 0.93578 1.02271 1.19454 1.01842 0.95793 0.92314 1.19676 1.00902 0.94790 0.94299 1.20779 1.01749 0.99416 0.94711 1.21610 0.95634 0.92744 0.99918 1.18798 0.97689 0.92594 0.92700 1.19768 0.94974 0.92020 0.90073 1.21222 1.16942 0.97131 0.97066 1.20788 0.96776 0.94337 0.96535 1.21793 1.13499 1.00750 0.93520 1.18533 0.88382 0.87763 0.92244 1.19627 1.37751 0.99700 0.89265 0.89798 1.26028 0.93609 0.94661 1.01071 1.70090 1.26582 1.08591 1.28663 0.86285 0.78782 0.80501 0.81337 1.18461 1.19848 1.19840 1.68717 1.15824 1.09529 1.23906 1.21065 1.00588 0.93864 0.97705 1.19442 1.01609 0.94376 0.94339 1.20764 1.01461 0.99851 0.94476 0.93011 0.92599 0.92729 0.91324 0.91185 0.91809 0.91950 0.91594 0.82921 0.88484 0.88520 0.88293 0.91764 0.86245 0.91854 0.92104 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.16 0.37 -1.19 16 2 C -0.09 -1.03 5.24 -27.88 -0.15 -1.18 16 3 C -0.09 -1.47 5.14 -104.55 -0.54 -2.01 16 4 C -0.10 -1.70 5.87 -104.67 -0.61 -2.31 16 5 C -0.11 -1.58 9.60 36.01 0.35 -1.23 16 6 C -0.08 -1.71 9.22 -39.24 -0.36 -2.07 16 7 C -0.02 -0.37 5.88 -104.90 -0.62 -0.99 16 8 C 0.18 4.40 6.74 -82.93 -0.56 3.84 16 9 C -0.30 -6.95 9.48 -38.79 -0.37 -7.32 16 10 C -0.06 -1.38 10.15 -39.39 -0.40 -1.78 16 11 C -0.27 -6.78 9.83 -38.64 -0.38 -7.16 16 12 C 0.26 7.05 6.55 -85.01 -0.56 6.49 16 13 C -0.43 -11.51 9.14 -37.72 -0.34 -11.85 16 14 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 15 C 0.07 1.79 5.50 -17.35 -0.10 1.69 16 16 N -0.72 -18.54 11.11 55.55 0.62 -17.92 16 17 Si 0.91 18.44 29.56 -169.99 -5.02 13.42 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 N -0.47 -12.84 6.92 -7.68 -0.05 -12.89 16 22 C -0.11 -2.12 9.07 -39.24 -0.36 -2.47 16 23 C -0.10 -1.57 5.87 -104.67 -0.61 -2.19 16 24 C -0.11 -1.33 9.60 36.00 0.35 -0.99 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 29 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.76 5.93 -51.93 -0.31 0.45 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.15 3.60 7.18 -52.48 -0.38 3.22 16 34 H 0.10 1.97 6.17 -52.49 -0.32 1.65 16 35 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.27 6.32 8.29 -40.82 -0.34 5.99 16 38 H 0.12 2.08 6.17 -52.49 -0.32 1.76 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.06 0.69 5.93 -51.93 -0.31 0.38 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -28.84 334.04 -9.92 -38.76 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.60 Total: 6.31 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -4.89 Total: -32.71 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.56 Total: -30.81 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.84 -9.92 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240738659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.749 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds